RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 GJA8P48165 433 aa12.72□□□□□ -0.37
COL6A3-214ENST00000493608 PLEKHH3Q7Z736 793 aa12.72□□□□□ -0.37
COL6A3-214ENST00000493608 CHD1LQ86WJ1 897 aa12.72□□□□□ -0.37
COL6A3-214ENST00000493608 U2AF1L4Q8WU68 220 aaKnown RBP12.72□□□□□ -0.37
COL6A3-214ENST00000493608 RILPL2Q969X0 211 aa12.72□□□□□ -0.37
COL6A3-214ENST00000493608 EVI5LQ96CN4 794 aa12.72□□□□□ -0.37
COL6A3-214ENST00000493608 INCENPQ9NQS7 918 aa12.72□□□□□ -0.37
COL6A3-214ENST00000493608 ARIH1Q9Y4X5 557 aaPredicted RBP12.72□□□□□ -0.37
COL6A3-214ENST00000493608 MYH4Q9Y623 1939 aa12.72□□□□□ -0.37
COL6A3-214ENST00000493608 COL11A1P12107 1806 aaPredicted RBP12.72□□□□□ -0.37
COL6A3-214ENST00000493608 FLOT1O75955 427 aa12.71□□□□□ -0.37
COL6A3-214ENST00000493608 SGPL1O95470 568 aa12.71□□□□□ -0.37
COL6A3-214ENST00000493608 TFRCP02786 760 aaKnown RBP12.71□□□□□ -0.37
COL6A3-214ENST00000493608 HMGCRP04035 888 aa12.71□□□□□ -0.37
COL6A3-214ENST00000493608 NUCB1Q02818 461 aa12.71□□□□□ -0.37
COL6A3-214ENST00000493608 PLS1Q14651 629 aa12.71□□□□□ -0.37
COL6A3-214ENST00000493608 E2F4Q16254 413 aa12.71□□□□□ -0.37
COL6A3-214ENST00000493608 CCL14Q16627 93 aa12.71□□□□□ -0.37
COL6A3-214ENST00000493608 FAM47AQ5JRC9 791 aa12.71□□□□□ -0.37
COL6A3-214ENST00000493608 MORN1Q5T089 497 aa12.71□□□□□ -0.37
COL6A3-214ENST00000493608 VPS53Q5VIR6 699 aa12.71□□□□□ -0.37
COL6A3-214ENST00000493608 LBX2Q6XYB7 198 aa12.71□□□□□ -0.37
COL6A3-214ENST00000493608 PLEKHM2Q8IWE5 1019 aa12.71□□□□□ -0.37
COL6A3-214ENST00000493608 ZNF444Q8N0Y2 327 aaPredicted RBP12.71□□□□□ -0.37
COL6A3-214ENST00000493608 TRIB2Q92519 343 aa12.71□□□□□ -0.37
COL6A3-214ENST00000493608 ATG4CQ96DT6 458 aa12.71□□□□□ -0.37
COL6A3-214ENST00000493608 FAM227BQ96M60 508 aa12.71□□□□□ -0.37
COL6A3-214ENST00000493608 DEFB118Q96PH6 123 aa12.71□□□□□ -0.37
COL6A3-214ENST00000493608 NACAP1Q9BZK3 213 aa12.71□□□□□ -0.37
COL6A3-214ENST00000493608 NAPBQ9H115 298 aa12.71□□□□□ -0.37
COL6A3-214ENST00000493608 FBXO28Q9NVF7 368 aa12.71□□□□□ -0.37
COL6A3-214ENST00000493608 HOXC10Q9NYD6 342 aa12.71□□□□□ -0.37
COL6A3-214ENST00000493608 CLIP2Q9UDT6 1046 aa12.71□□□□□ -0.37
COL6A3-214ENST00000493608 GREB1LQ9C091 1923 aaPredicted RBP12.7□□□□□ -0.38
COL6A3-214ENST00000493608 ZNFX1Q9P2E3 1918 aaKnown RBP12.7□□□□□ -0.38
COL6A3-214ENST00000493608 PARP14Q460N5 1801 aa12.7□□□□□ -0.38
COL6A3-214ENST00000493608 FOXP2O15409 715 aa12.7□□□□□ -0.38
COL6A3-214ENST00000493608 CCNA1P78396 465 aa12.7□□□□□ -0.38
COL6A3-214ENST00000493608 CTDSPL2Q05D32 466 aa12.7□□□□□ -0.38
COL6A3-214ENST00000493608 FAM83BQ5T0W9 1011 aa12.7□□□□□ -0.38
COL6A3-214ENST00000493608 PRPF38BQ5VTL8 546 aaKnown RBP12.7□□□□□ -0.38
COL6A3-214ENST00000493608 NKX2-3Q8TAU0 364 aa12.7□□□□□ -0.38
COL6A3-214ENST00000493608 LPAR1Q92633 364 aa12.7□□□□□ -0.38
COL6A3-214ENST00000493608 USP6NLQ92738 828 aa12.7□□□□□ -0.38
COL6A3-214ENST00000493608 CHMP4CQ96CF2 233 aa12.7□□□□□ -0.38
COL6A3-214ENST00000493608 MOV10L1Q9BXT6 1211 aaKnown RBP12.7□□□□□ -0.38
COL6A3-214ENST00000493608 SH2D4AQ9H788 454 aa12.7□□□□□ -0.38
COL6A3-214ENST00000493608 ROBO3Q96MS0 1386 aa12.69□□□□□ -0.38
COL6A3-214ENST00000493608 A0A0D9SFI3 127 aa12.69□□□□□ -0.38
COL6A3-214ENST00000493608 RGS2P41220 211 aa12.69□□□□□ -0.38
COL6A3-214ENST00000493608 PPARAQ07869 468 aa12.69□□□□□ -0.38
COL6A3-214ENST00000493608 NMIQ13287 307 aaPredicted RBP12.69□□□□□ -0.38
COL6A3-214ENST00000493608 PROX2Q3B8N5 592 aa12.69□□□□□ -0.38
COL6A3-214ENST00000493608 C6orf132Q5T0Z8 1188 aa12.69□□□□□ -0.38
COL6A3-214ENST00000493608 SOCS4Q8WXH5 440 aa12.69□□□□□ -0.38
COL6A3-214ENST00000493608 DDX12PQ92771 950 aa12.69□□□□□ -0.38
COL6A3-214ENST00000493608 NUP88Q99567 741 aaPredicted RBP12.69□□□□□ -0.38
COL6A3-214ENST00000493608 SPATC1LQ9H0A9 340 aa12.69□□□□□ -0.38
COL6A3-214ENST00000493608 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.69□□□□□ -0.38
COL6A3-214ENST00000493608 GOPCQ9HD26 462 aa12.69□□□□□ -0.38
COL6A3-214ENST00000493608 HMX1Q9NP08 348 aaPredicted RBP12.69□□□□□ -0.38
COL6A3-214ENST00000493608 PAK6Q9NQU5 681 aaPredicted RBP12.69□□□□□ -0.38
COL6A3-214ENST00000493608 RPTORQ8N122 1335 aa12.68□□□□□ -0.38
COL6A3-214ENST00000493608 IGKV6D-41A0A0C4DH26 115 aa12.68□□□□□ -0.38
COL6A3-214ENST00000493608 SLC15A5A6NIM6 579 aa12.68□□□□□ -0.38
COL6A3-214ENST00000493608 F5H6K3 240 aa12.68□□□□□ -0.38
COL6A3-214ENST00000493608 WDR46O15213 610 aaKnown RBP12.68□□□□□ -0.38
COL6A3-214ENST00000493608 XRCC5P13010 732 aaKnown RBP12.68□□□□□ -0.38
COL6A3-214ENST00000493608 ZKSCAN1P17029 563 aaPredicted RBP12.68□□□□□ -0.38
COL6A3-214ENST00000493608 ERCC3P19447 782 aa12.68□□□□□ -0.38
COL6A3-214ENST00000493608 TFAP4Q01664 338 aa12.68□□□□□ -0.38
COL6A3-214ENST00000493608 PDE4BQ07343 736 aa12.68□□□□□ -0.38
COL6A3-214ENST00000493608 KLRC3Q07444 240 aa12.68□□□□□ -0.38
COL6A3-214ENST00000493608 CACNB2Q08289 660 aaPredicted RBP12.68□□□□□ -0.38
COL6A3-214ENST00000493608 MAP2K5Q13163 448 aa12.68□□□□□ -0.38
COL6A3-214ENST00000493608 MCMDC2Q4G0Z9 681 aa12.68□□□□□ -0.38
COL6A3-214ENST00000493608 NPLOC4Q8TAT6 608 aa12.68□□□□□ -0.38
COL6A3-214ENST00000493608 CEP95Q96GE4 821 aa12.68□□□□□ -0.38
COL6A3-214ENST00000493608 ZNF287Q9HBT7 754 aa12.68□□□□□ -0.38
COL6A3-214ENST00000493608 HELLSQ9NRZ9 838 aa12.68□□□□□ -0.38
COL6A3-214ENST00000493608 FLRT1Q9NZU1 646 aa12.68□□□□□ -0.38
COL6A3-214ENST00000493608 NYAP2Q9P242 653 aa12.68□□□□□ -0.38
COL6A3-214ENST00000493608 TACC3Q9Y6A5 838 aa12.68□□□□□ -0.38
COL6A3-214ENST00000493608 IVNS1ABPQ9Y6Y0 642 aa12.68□□□□□ -0.38
COL6A3-214ENST00000493608 FARP2O94887 1054 aaPredicted RBP12.67□□□□□ -0.38
COL6A3-214ENST00000493608 SLC3A2P08195 630 aaKnown RBP12.67□□□□□ -0.38
COL6A3-214ENST00000493608 TSPY3P0CV98 308 aa12.67□□□□□ -0.38
COL6A3-214ENST00000493608 TSPY8P0CW00 308 aa12.67□□□□□ -0.38
COL6A3-214ENST00000493608 TMEM132BQ14DG7 1078 aa12.67□□□□□ -0.38
COL6A3-214ENST00000493608 ZNF589Q86UQ0 364 aaPredicted RBP12.67□□□□□ -0.38
COL6A3-214ENST00000493608 NCAPG2Q86XI2 1143 aa12.67□□□□□ -0.38
COL6A3-214ENST00000493608 LRRC47Q8N1G4 583 aaKnown RBP12.67□□□□□ -0.38
COL6A3-214ENST00000493608 DPF3Q92784 378 aa12.67□□□□□ -0.38
COL6A3-214ENST00000493608 MTMR4Q9NYA4 1195 aa12.67□□□□□ -0.38
COL6A3-214ENST00000493608 CEP290O15078 2479 aa12.66□□□□□ -0.38
COL6A3-214ENST00000493608 A0A0G2JMZ2 1700 aa12.66□□□□□ -0.38
COL6A3-214ENST00000493608 NDUFB10O96000 172 aa12.66□□□□□ -0.38
COL6A3-214ENST00000493608 FGAP02671 866 aa12.66□□□□□ -0.38
COL6A3-214ENST00000493608 SDSP20132 328 aa12.66□□□□□ -0.38
COL6A3-214ENST00000493608 ADORA2AP29274 412 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms