RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 CCDC12Q8WUD4 166 aaPredicted RBP23.99■■□□□ 1.43
CCDC88B-208ENST00000492980 ZDHHC15Q96MV8 337 aa23.99■■□□□ 1.43
CCDC88B-208ENST00000492980 RIOX1Q9H6W3 641 aa23.99■■□□□ 1.43
CCDC88B-208ENST00000492980 ANO8Q9HCE9 1232 aaPredicted RBP23.99■■□□□ 1.43
CCDC88B-208ENST00000492980 FKBP1AP62942 108 aaKnown RBP23.98■■□□□ 1.43
CCDC88B-208ENST00000492980 NFIAQ12857 509 aa23.98■■□□□ 1.43
CCDC88B-208ENST00000492980 LRRC47Q8N1G4 583 aaKnown RBP23.98■■□□□ 1.43
CCDC88B-208ENST00000492980 PIGSQ96S52 555 aa23.98■■□□□ 1.43
CCDC88B-208ENST00000492980 SEC63Q9UGP8 760 aaKnown RBP23.98■■□□□ 1.43
CCDC88B-208ENST00000492980 SNHG28P0DPA3 235 aa23.98■■□□□ 1.43
CCDC88B-208ENST00000492980 CASP1P29466 404 aa23.98■■□□□ 1.43
CCDC88B-208ENST00000492980 STRIP1Q5VSL9 837 aa23.98■■□□□ 1.43
CCDC88B-208ENST00000492980 CLEC10AQ8IUN9 316 aa23.98■■□□□ 1.43
CCDC88B-208ENST00000492980 IQUBQ8NA54 791 aa23.98■■□□□ 1.43
CCDC88B-208ENST00000492980 ENOX1Q8TC92 643 aaKnown RBP23.98■■□□□ 1.43
CCDC88B-208ENST00000492980 DPF2Q92785 391 aa23.98■■□□□ 1.43
CCDC88B-208ENST00000492980 PYM1Q9BRP8 204 aaKnown RBP23.98■■□□□ 1.43
CCDC88B-208ENST00000492980 FRMPD2Q68DX3 1309 aaPredicted RBP23.97■■□□□ 1.43
CCDC88B-208ENST00000492980 CBFA2T2O43439 604 aa23.97■■□□□ 1.43
CCDC88B-208ENST00000492980 ECE2O60344 883 aa23.97■■□□□ 1.43
CCDC88B-208ENST00000492980 SERPINC1P01008 464 aa23.97■■□□□ 1.43
CCDC88B-208ENST00000492980 CHRNA5P30532 468 aa23.97■■□□□ 1.43
CCDC88B-208ENST00000492980 UBASH3AP57075 661 aa23.97■■□□□ 1.43
CCDC88B-208ENST00000492980 ASPRV1Q53RT3 343 aa23.97■■□□□ 1.43
CCDC88B-208ENST00000492980 DACT2Q5SW24 774 aa23.97■■□□□ 1.43
CCDC88B-208ENST00000492980 PDXDC2PQ6P474 469 aa23.97■■□□□ 1.43
CCDC88B-208ENST00000492980 UBA5Q9GZZ9 404 aa23.97■■□□□ 1.43
CCDC88B-208ENST00000492980 VAT1LQ9HCJ6 419 aa23.97■■□□□ 1.43
CCDC88B-208ENST00000492980 SIPA1L1O43166 1804 aa23.97■■□□□ 1.43
CCDC88B-208ENST00000492980 SMCO2A6NFE2 343 aa23.96■■□□□ 1.43
CCDC88B-208ENST00000492980 HLA-DOAP06340 250 aa23.96■■□□□ 1.43
CCDC88B-208ENST00000492980 SKILP12757 684 aa23.96■■□□□ 1.43
CCDC88B-208ENST00000492980 EIF6P56537 245 aaKnown RBP23.96■■□□□ 1.43
CCDC88B-208ENST00000492980 MRIQ9BWK5 157 aa23.96■■□□□ 1.43
CCDC88B-208ENST00000492980 TTLL1O95922 423 aa23.96■■□□□ 1.43
CCDC88B-208ENST00000492980 KRT25Q7Z3Z0 450 aa23.96■■□□□ 1.43
CCDC88B-208ENST00000492980 KIAA0825Q8IV33 1275 aa23.96■■□□□ 1.43
CCDC88B-208ENST00000492980 GSDMAQ96QA5 445 aa23.96■■□□□ 1.43
CCDC88B-208ENST00000492980 MED15Q96RN5 788 aa23.96■■□□□ 1.43
CCDC88B-208ENST00000492980 TMEM60Q9H2L4 133 aa23.96■■□□□ 1.43
CCDC88B-208ENST00000492980 C6orf50Q9HD87 102 aa23.96■■□□□ 1.43
CCDC88B-208ENST00000492980 ZNF219Q9P2Y4 722 aaPredicted RBP23.96■■□□□ 1.43
CCDC88B-208ENST00000492980 UQCRHLA0A096LP55 91 aa23.95■■□□□ 1.42
CCDC88B-208ENST00000492980 UQCRHP07919 91 aa23.95■■□□□ 1.42
CCDC88B-208ENST00000492980 GNA11P29992 359 aa23.95■■□□□ 1.42
CCDC88B-208ENST00000492980 SLC15A2Q16348 729 aa23.95■■□□□ 1.42
CCDC88B-208ENST00000492980 ZFPM1Q8IX07 1006 aa23.95■■□□□ 1.42
CCDC88B-208ENST00000492980 TRMT44Q8IYL2 757 aaKnown RBP23.95■■□□□ 1.42
CCDC88B-208ENST00000492980 CCDC150Q8NCX0 1101 aa23.95■■□□□ 1.42
CCDC88B-208ENST00000492980 EHD4Q9H223 541 aa23.95■■□□□ 1.42
CCDC88B-208ENST00000492980 NFE2L3Q9Y4A8 694 aa23.95■■□□□ 1.42
CCDC88B-208ENST00000492980 PCDHAC2Q9Y5I4 1007 aa23.95■■□□□ 1.42
CCDC88B-208ENST00000492980 ZNF18P17022 549 aa23.95■■□□□ 1.42
CCDC88B-208ENST00000492980 ERCC5P28715 1186 aaPredicted RBP23.95■■□□□ 1.42
CCDC88B-208ENST00000492980 CT47A1Q5JQC4 288 aaPredicted RBP23.95■■□□□ 1.42
CCDC88B-208ENST00000492980 ARMCX5Q6P1M9 558 aa23.95■■□□□ 1.42
CCDC88B-208ENST00000492980 CNKSR1Q969H4 720 aa23.95■■□□□ 1.42
CCDC88B-208ENST00000492980 PRIMPOLQ96LW4 560 aa23.95■■□□□ 1.42
CCDC88B-208ENST00000492980 ESYT2A0FGR8 921 aa23.94■■□□□ 1.42
CCDC88B-208ENST00000492980 SOGA3Q5TF21 947 aa23.94■■□□□ 1.42
CCDC88B-208ENST00000492980 DTHD1Q6ZMT9 781 aa23.94■■□□□ 1.42
CCDC88B-208ENST00000492980 MYH4Q9Y623 1939 aa23.94■■□□□ 1.42
CCDC88B-208ENST00000492980 hCG_1984214I3L0E3 225 aa23.93■■□□□ 1.42
CCDC88B-208ENST00000492980 HDLBPQ00341 1268 aaKnown RBP23.93■■□□□ 1.42
CCDC88B-208ENST00000492980 CFAP100Q494V2 611 aa23.93■■□□□ 1.42
CCDC88B-208ENST00000492980 ZNF713Q8N859 430 aaPredicted RBP23.93■■□□□ 1.42
CCDC88B-208ENST00000492980 C7orf43Q8WVR3 580 aa23.93■■□□□ 1.42
CCDC88B-208ENST00000492980 LAD1O00515 517 aa23.93■■□□□ 1.42
CCDC88B-208ENST00000492980 TXLNAP40222 546 aa23.93■■□□□ 1.42
CCDC88B-208ENST00000492980 NONOQ15233 471 aaKnown RBP eCLIP23.93■■□□□ 1.42
CCDC88B-208ENST00000492980 EZH2Q15910 746 aaKnown RBP23.93■■□□□ 1.42
CCDC88B-208ENST00000492980 STAMQ92783 540 aa23.93■■□□□ 1.42
CCDC88B-208ENST00000492980 MTRQ99707 1265 aa23.93■■□□□ 1.42
CCDC88B-208ENST00000492980 CD44P16070 742 aaKnown RBP23.92■■□□□ 1.42
CCDC88B-208ENST00000492980 CDC25AP30304 524 aa23.92■■□□□ 1.42
CCDC88B-208ENST00000492980 ZNF543Q08ER8 600 aa23.92■■□□□ 1.42
CCDC88B-208ENST00000492980 DNAJC18Q9H819 358 aa23.92■■□□□ 1.42
CCDC88B-208ENST00000492980 SLURP2P0DP57 97 aa23.92■■□□□ 1.42
CCDC88B-208ENST00000492980 PRPHP41219 470 aa23.92■■□□□ 1.42
CCDC88B-208ENST00000492980 CACNB3P54284 484 aa23.92■■□□□ 1.42
CCDC88B-208ENST00000492980 CUL4BQ13620 913 aa23.92■■□□□ 1.42
CCDC88B-208ENST00000492980 DHX8Q14562 1220 aaKnown RBP23.92■■□□□ 1.42
CCDC88B-208ENST00000492980 GPCPD1Q9NPB8 672 aa23.92■■□□□ 1.42
CCDC88B-208ENST00000492980 INTS13Q9NVM9 706 aa23.92■■□□□ 1.42
CCDC88B-208ENST00000492980 GTPBP6O43824 516 aaPredicted RBP23.91■■□□□ 1.42
CCDC88B-208ENST00000492980 KARSQ15046 597 aaKnown RBP23.91■■□□□ 1.42
CCDC88B-208ENST00000492980 AOC3Q16853 763 aa23.91■■□□□ 1.42
CCDC88B-208ENST00000492980 HSP90AA4PQ58FG1 418 aa23.91■■□□□ 1.42
CCDC88B-208ENST00000492980 VSTM4Q8IW00 320 aa23.91■■□□□ 1.42
CCDC88B-208ENST00000492980 CAMKK2Q96RR4 588 aa23.91■■□□□ 1.42
CCDC88B-208ENST00000492980 IDI2Q9BXS1 227 aa23.91■■□□□ 1.42
CCDC88B-208ENST00000492980 BLZF1Q9H2G9 400 aa23.91■■□□□ 1.42
CCDC88B-208ENST00000492980 TMEM232C9JQI7 657 aa23.9■■□□□ 1.42
CCDC88B-208ENST00000492980 MPHOSPH10O00566 681 aaKnown RBP23.9■■□□□ 1.42
CCDC88B-208ENST00000492980 MYRIPQ8NFW9 859 aa23.9■■□□□ 1.42
CCDC88B-208ENST00000492980 DHX36Q9H2U1 1008 aaKnown RBP23.9■■□□□ 1.42
CCDC88B-208ENST00000492980 DISC1Q9NRI5 854 aa23.9■■□□□ 1.42
CCDC88B-208ENST00000492980 STK32BQ9NY57 414 aa23.9■■□□□ 1.42
CCDC88B-208ENST00000492980 FAM198AQ9UFP1 575 aa23.9■■□□□ 1.42
CCDC88B-208ENST00000492980 SFPQP23246 707 aaKnown RBP eCLIP23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms