RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 CCDC171Q6TFL3 1326 aa27.28■■□□□ 1.96
COL9A3-213ENST00000489045 PGK2P07205 417 aa27.28■■□□□ 1.96
COL9A3-213ENST00000489045 COL6A1P12109 1028 aa27.28■■□□□ 1.96
COL9A3-213ENST00000489045 KCTD2Q14681 263 aa27.28■■□□□ 1.96
COL9A3-213ENST00000489045 C7orf61Q8IZ16 206 aa27.28■■□□□ 1.96
COL9A3-213ENST00000489045 FEM1BQ9UK73 627 aa27.28■■□□□ 1.96
COL9A3-213ENST00000489045 FGAP02671 866 aa27.27■■□□□ 1.96
COL9A3-213ENST00000489045 HSPD1P10809 573 aaKnown RBP27.27■■□□□ 1.96
COL9A3-213ENST00000489045 BMP3P12645 472 aa27.27■■□□□ 1.96
COL9A3-213ENST00000489045 STX8Q9UNK0 236 aa27.27■■□□□ 1.96
COL9A3-213ENST00000489045 ZMYM6O95789 1325 aa27.26■■□□□ 1.95
COL9A3-213ENST00000489045 RANBP6O60518 1105 aaKnown RBP27.26■■□□□ 1.95
COL9A3-213ENST00000489045 NMT2O60551 498 aa27.26■■□□□ 1.95
COL9A3-213ENST00000489045 ZBED4O75132 1171 aa27.26■■□□□ 1.95
COL9A3-213ENST00000489045 PPP4R3BQ5MIZ7 849 aa27.26■■□□□ 1.95
COL9A3-213ENST00000489045 IL17RBQ9NRM6 502 aa27.26■■□□□ 1.95
COL9A3-213ENST00000489045 RBM27Q9P2N5 1060 aaKnown RBP27.26■■□□□ 1.95
COL9A3-213ENST00000489045 ISY1Q9ULR0 285 aaKnown RBP27.26■■□□□ 1.95
COL9A3-213ENST00000489045 CTDP1Q9Y5B0 961 aaPredicted RBP27.26■■□□□ 1.95
COL9A3-213ENST00000489045 LAMA4Q16363 1823 aa27.25■■□□□ 1.95
COL9A3-213ENST00000489045 RANBP2P49792 3224 aaKnown RBP27.25■■□□□ 1.95
COL9A3-213ENST00000489045 ATP2A1O14983 1001 aa27.25■■□□□ 1.95
COL9A3-213ENST00000489045 ORC4O43929 436 aa27.25■■□□□ 1.95
COL9A3-213ENST00000489045 SDSP20132 328 aa27.25■■□□□ 1.95
COL9A3-213ENST00000489045 SLC4A3P48751 1232 aa27.25■■□□□ 1.95
COL9A3-213ENST00000489045 PRAMEF19Q5SWL8 479 aa27.25■■□□□ 1.95
COL9A3-213ENST00000489045 CPXCR1Q8N123 301 aa27.25■■□□□ 1.95
COL9A3-213ENST00000489045 SLC38A10Q9HBR0 1119 aa27.25■■□□□ 1.95
COL9A3-213ENST00000489045 RIPK3Q9Y572 518 aa27.25■■□□□ 1.95
COL9A3-213ENST00000489045 FGRP09769 529 aa27.24■■□□□ 1.95
COL9A3-213ENST00000489045 FXR1P51114 621 aaKnown RBP eCLIP27.24■■□□□ 1.95
COL9A3-213ENST00000489045 ZNF792Q3KQV3 632 aa27.24■■□□□ 1.95
COL9A3-213ENST00000489045 CHMP4CQ96CF2 233 aa27.24■■□□□ 1.95
COL9A3-213ENST00000489045 GMCL1Q96IK5 515 aa27.24■■□□□ 1.95
COL9A3-213ENST00000489045 PRO3102Q9H379 93 aa27.24■■□□□ 1.95
COL9A3-213ENST00000489045 RAVER2Q9HCJ3 691 aaKnown RBP27.24■■□□□ 1.95
COL9A3-213ENST00000489045 TOMM22Q9NS69 142 aa27.24■■□□□ 1.95
COL9A3-213ENST00000489045 SMCHD1A6NHR9 2005 aa27.24■■□□□ 1.95
COL9A3-213ENST00000489045 TMEM232C9JQI7 657 aa27.23■■□□□ 1.95
COL9A3-213ENST00000489045 SEPT4O43236 478 aa27.23■■□□□ 1.95
COL9A3-213ENST00000489045 ANO1Q5XXA6 986 aa27.23■■□□□ 1.95
COL9A3-213ENST00000489045 ZMYND8Q9ULU4 1186 aaPredicted RBP27.23■■□□□ 1.95
COL9A3-213ENST00000489045 DIS3Q9Y2L1 958 aaKnown RBP27.23■■□□□ 1.95
COL9A3-213ENST00000489045 MCCP23508 829 aa27.22■■□□□ 1.95
COL9A3-213ENST00000489045 SLC1A4P43007 532 aa27.22■■□□□ 1.95
COL9A3-213ENST00000489045 STAT2P52630 851 aa27.22■■□□□ 1.95
COL9A3-213ENST00000489045 RRP12Q5JTH9 1297 aaKnown RBP27.22■■□□□ 1.95
COL9A3-213ENST00000489045 TINF2Q9BSI4 451 aa27.22■■□□□ 1.95
COL9A3-213ENST00000489045 MFAP1P55081 439 aaKnown RBP27.21■■□□□ 1.95
COL9A3-213ENST00000489045 HAND2P61296 217 aa27.21■■□□□ 1.95
COL9A3-213ENST00000489045 LRRC26Q2I0M4 334 aa27.21■■□□□ 1.95
COL9A3-213ENST00000489045 RASGRP2Q7LDG7 609 aa27.21■■□□□ 1.95
COL9A3-213ENST00000489045 DNM1LO00429 736 aa27.2■■□□□ 1.94
COL9A3-213ENST00000489045 OAZ1P54368 228 aa27.2■■□□□ 1.94
COL9A3-213ENST00000489045 IRX6P78412 446 aaPredicted RBP27.2■■□□□ 1.94
COL9A3-213ENST00000489045 IKQ13123 557 aaPredicted RBP27.2■■□□□ 1.94
COL9A3-213ENST00000489045 FAM160B2Q86V87 743 aa27.2■■□□□ 1.94
COL9A3-213ENST00000489045 DDX11Q96FC9 970 aa27.2■■□□□ 1.94
COL9A3-213ENST00000489045 SENP6Q9GZR1 1112 aaPredicted RBP27.2■■□□□ 1.94
COL9A3-213ENST00000489045 DIAPH3Q9NSV4 1193 aa27.2■■□□□ 1.94
COL9A3-213ENST00000489045 MCM3APO60318 1980 aa27.2■■□□□ 1.94
COL9A3-213ENST00000489045 NOVP48745 357 aa27.19■■□□□ 1.94
COL9A3-213ENST00000489045 GJC2Q5T442 439 aaPredicted RBP27.19■■□□□ 1.94
COL9A3-213ENST00000489045 CWC27Q6UX04 472 aaKnown RBP27.19■■□□□ 1.94
COL9A3-213ENST00000489045 KCTD1Q719H9 257 aa27.19■■□□□ 1.94
COL9A3-213ENST00000489045 CHURC1Q8WUH1 139 aa27.19■■□□□ 1.94
COL9A3-213ENST00000489045 STAG1Q8WVM7 1258 aa27.19■■□□□ 1.94
COL9A3-213ENST00000489045 NRBP1Q9UHY1 535 aa27.19■■□□□ 1.94
COL9A3-213ENST00000489045 MTMR7Q9Y216 660 aa27.19■■□□□ 1.94
COL9A3-213ENST00000489045 FDX1P10109 184 aa27.18■■□□□ 1.94
COL9A3-213ENST00000489045 SYN1P17600 705 aa27.18■■□□□ 1.94
COL9A3-213ENST00000489045 RCSD1Q6JBY9 416 aa27.18■■□□□ 1.94
COL9A3-213ENST00000489045 DHX30Q7L2E3 1194 aaKnown RBP eCLIP27.18■■□□□ 1.94
COL9A3-213ENST00000489045 ARRDC4Q8NCT1 418 aa27.18■■□□□ 1.94
COL9A3-213ENST00000489045 DNAH12Q6ZR08 3092 aa27.17■■□□□ 1.94
COL9A3-213ENST00000489045 DNAJC25-GNG10A0A024R161 153 aa27.17■■□□□ 1.94
COL9A3-213ENST00000489045 TAL1P17542 331 aaPredicted RBP27.17■■□□□ 1.94
COL9A3-213ENST00000489045 TBC1D10CQ8IV04 446 aa27.17■■□□□ 1.94
COL9A3-213ENST00000489045 CHST13Q8NET6 341 aa27.17■■□□□ 1.94
COL9A3-213ENST00000489045 FBXO40Q9UH90 709 aa27.17■■□□□ 1.94
COL9A3-213ENST00000489045 KBTBD13C9JR72 458 aa27.16■■□□□ 1.94
COL9A3-213ENST00000489045 HIP1O00291 1037 aa27.16■■□□□ 1.94
COL9A3-213ENST00000489045 PLA2G6O60733 806 aa27.16■■□□□ 1.94
COL9A3-213ENST00000489045 MYCNP04198 464 aaPredicted RBP27.16■■□□□ 1.94
COL9A3-213ENST00000489045 AKNAD1Q5T1N1 836 aa27.16■■□□□ 1.94
COL9A3-213ENST00000489045 ANKRD35Q8N283 1001 aa27.16■■□□□ 1.94
COL9A3-213ENST00000489045 HOMER2Q9NSB8 354 aa27.16■■□□□ 1.94
COL9A3-213ENST00000489045 ZNF536O15090 1300 aa27.16■■□□□ 1.94
COL9A3-213ENST00000489045 PDE4AP27815 886 aa27.15■■□□□ 1.94
COL9A3-213ENST00000489045 ATN1P54259 1190 aaPredicted RBP27.15■■□□□ 1.94
COL9A3-213ENST00000489045 CCDC96Q2M329 555 aa27.15■■□□□ 1.94
COL9A3-213ENST00000489045 MFSD6Q6ZSS7 791 aa27.15■■□□□ 1.94
COL9A3-213ENST00000489045 MSL3Q8N5Y2 521 aaKnown RBP27.15■■□□□ 1.94
COL9A3-213ENST00000489045 DCAF4Q8WV16 495 aa27.15■■□□□ 1.94
COL9A3-213ENST00000489045 TCP11L1Q9NUJ3 509 aa27.15■■□□□ 1.94
COL9A3-213ENST00000489045 SYNGAP1Q96PV0 1343 aa27.15■■□□□ 1.94
COL9A3-213ENST00000489045 ZNF865P0CJ78 1059 aaPredicted RBP27.14■■□□□ 1.94
COL9A3-213ENST00000489045 TOP1P11387 765 aaKnown RBP27.14■■□□□ 1.94
COL9A3-213ENST00000489045 PCP11498 1178 aaKnown RBP27.14■■□□□ 1.94
COL9A3-213ENST00000489045 AGBL1Q96MI9 1066 aa27.14■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms