RNA–Protein interactions for RNA: ENST00000489037.1

BRCA1-218, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 4

Gene BRCA1, Length 455 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-218ENST00000489037 CHMP4CQ96CF2 233 aa16.81■□□□□ 0.28
BRCA1-218ENST00000489037 NBPF3Q9H094 633 aa16.81■□□□□ 0.28
BRCA1-218ENST00000489037 UNC93B1Q9H1C4 597 aa16.81■□□□□ 0.28
BRCA1-218ENST00000489037 IL25Q9H293 177 aa16.81■□□□□ 0.28
BRCA1-218ENST00000489037 NEDD4P46934 1319 aa16.8■□□□□ 0.28
BRCA1-218ENST00000489037 B4E1Z4 1266 aa16.8■□□□□ 0.28
BRCA1-218ENST00000489037 KDM4AO75164 1064 aa16.8■□□□□ 0.28
BRCA1-218ENST00000489037 NOVP48745 357 aa16.8■□□□□ 0.28
BRCA1-218ENST00000489037 SLC4A3P48751 1232 aa16.8■□□□□ 0.28
BRCA1-218ENST00000489037 MFSD14CQ5VZR4 134 aa16.8■□□□□ 0.28
BRCA1-218ENST00000489037 ABRAQ8N0Z2 381 aa16.8■□□□□ 0.28
BRCA1-218ENST00000489037 CPXCR1Q8N123 301 aa16.8■□□□□ 0.28
BRCA1-218ENST00000489037 TRIB2Q92519 343 aa16.8■□□□□ 0.28
BRCA1-218ENST00000489037 TMEM47Q9BQJ4 181 aa16.8■□□□□ 0.28
BRCA1-218ENST00000489037 TEX13BQ9BXU2 312 aa16.8■□□□□ 0.28
BRCA1-218ENST00000489037 HMX1Q9NP08 348 aaPredicted RBP16.8■□□□□ 0.28
BRCA1-218ENST00000489037 PDE4DIPQ5VU43 2346 aa16.8■□□□□ 0.28
BRCA1-218ENST00000489037 RPTORQ8N122 1335 aa16.79■□□□□ 0.28
BRCA1-218ENST00000489037 ADORA2AP29274 412 aa16.79■□□□□ 0.28
BRCA1-218ENST00000489037 PTH1RQ03431 593 aa16.79■□□□□ 0.28
BRCA1-218ENST00000489037 KCTD2Q14681 263 aa16.79■□□□□ 0.28
BRCA1-218ENST00000489037 ERICH6BQ5W0A0 696 aa16.79■□□□□ 0.28
BRCA1-218ENST00000489037 SNRNP48Q6IEG0 339 aaKnown RBP16.79■□□□□ 0.28
BRCA1-218ENST00000489037 KCTD1Q719H9 257 aa16.79■□□□□ 0.28
BRCA1-218ENST00000489037 DGKHQ86XP1 1220 aa16.79■□□□□ 0.28
BRCA1-218ENST00000489037 MMP19Q99542 508 aa16.79■□□□□ 0.28
BRCA1-218ENST00000489037 ZKSCAN3Q9BRR0 538 aa16.79■□□□□ 0.28
BRCA1-218ENST00000489037 UBAC1Q9BSL1 405 aa16.79■□□□□ 0.28
BRCA1-218ENST00000489037 ZNF214Q9UL59 606 aaPredicted RBP16.79■□□□□ 0.28
BRCA1-218ENST00000489037 HTTP42858 3142 aa16.79■□□□□ 0.28
BRCA1-218ENST00000489037 PLA2G6O60733 806 aa16.78■□□□□ 0.28
BRCA1-218ENST00000489037 TFRCP02786 760 aaKnown RBP16.78■□□□□ 0.28
BRCA1-218ENST00000489037 HOXC6P09630 235 aa16.78■□□□□ 0.28
BRCA1-218ENST00000489037 GJA8P48165 433 aa16.78■□□□□ 0.28
BRCA1-218ENST00000489037 OAZ1P54368 228 aa16.78■□□□□ 0.28
BRCA1-218ENST00000489037 REPS2Q8NFH8 660 aa16.78■□□□□ 0.28
BRCA1-218ENST00000489037 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.78■□□□□ 0.28
BRCA1-218ENST00000489037 SLC38A10Q9HBR0 1119 aa16.78■□□□□ 0.28
BRCA1-218ENST00000489037 ZSWIM5Q9P217 1185 aa16.78■□□□□ 0.28
BRCA1-218ENST00000489037 ZNF236Q9UL36 1845 aa16.77■□□□□ 0.28
BRCA1-218ENST00000489037 ATP2A1O14983 1001 aa16.77■□□□□ 0.28
BRCA1-218ENST00000489037 SGPL1O95470 568 aa16.77■□□□□ 0.28
BRCA1-218ENST00000489037 PRKAR2AP13861 404 aaKnown RBP16.77■□□□□ 0.28
BRCA1-218ENST00000489037 CCL14Q16627 93 aa16.77■□□□□ 0.28
BRCA1-218ENST00000489037 RALYLQ86SE5 291 aaKnown RBP16.77■□□□□ 0.28
BRCA1-218ENST00000489037 U2AF1L4Q8WU68 220 aaKnown RBP16.77■□□□□ 0.28
BRCA1-218ENST00000489037 MAP4K1Q92918 833 aa16.77■□□□□ 0.28
BRCA1-218ENST00000489037 DEFB118Q96PH6 123 aa16.77■□□□□ 0.28
BRCA1-218ENST00000489037 ZSCAN10Q96SZ4 725 aaPredicted RBP16.77■□□□□ 0.28
BRCA1-218ENST00000489037 ESYT1Q9BSJ8 1104 aa16.77■□□□□ 0.28
BRCA1-218ENST00000489037 KAT14Q9H8E8 782 aa16.77■□□□□ 0.28
BRCA1-218ENST00000489037 RAVER2Q9HCJ3 691 aaKnown RBP16.77■□□□□ 0.28
BRCA1-218ENST00000489037 FBXO40Q9UH90 709 aa16.77■□□□□ 0.28
BRCA1-218ENST00000489037 PLXNA1Q9UIW2 1896 aa16.77■□□□□ 0.27
BRCA1-218ENST00000489037 CYP21A2P08686 494 aa16.76■□□□□ 0.27
BRCA1-218ENST00000489037 SKAP1Q86WV1 359 aa16.76■□□□□ 0.27
BRCA1-218ENST00000489037 NPLOC4Q8TAT6 608 aa16.76■□□□□ 0.27
BRCA1-218ENST00000489037 DDX11Q96FC9 970 aa16.76■□□□□ 0.27
BRCA1-218ENST00000489037 PPP4R2Q9NY27 417 aa16.76■□□□□ 0.27
BRCA1-218ENST00000489037 CENPFP49454 3210 aa16.76■□□□□ 0.27
BRCA1-218ENST00000489037 ERICH2A1L162 156 aa16.75■□□□□ 0.27
BRCA1-218ENST00000489037 CDC45O75419 566 aa16.75■□□□□ 0.27
BRCA1-218ENST00000489037 CACNB2Q08289 660 aaPredicted RBP16.75■□□□□ 0.27
BRCA1-218ENST00000489037 TRIM32Q13049 653 aa16.75■□□□□ 0.27
BRCA1-218ENST00000489037 PNMA1Q8ND90 353 aa16.75■□□□□ 0.27
BRCA1-218ENST00000489037 CHST13Q8NET6 341 aa16.75■□□□□ 0.27
BRCA1-218ENST00000489037 NCOA7Q8NI08 942 aa16.75■□□□□ 0.27
BRCA1-218ENST00000489037 GPCPD1Q9NPB8 672 aa16.75■□□□□ 0.27
BRCA1-218ENST00000489037 ANO2Q9NQ90 1003 aa16.75■□□□□ 0.27
BRCA1-218ENST00000489037 PAK6Q9NQU5 681 aaPredicted RBP16.75■□□□□ 0.27
BRCA1-218ENST00000489037 PRR12Q9ULL5 1215 aa16.75■□□□□ 0.27
BRCA1-218ENST00000489037 RBM8AQ9Y5S9 174 aaKnown RBP16.75■□□□□ 0.27
BRCA1-218ENST00000489037 TNKSO95271 1327 aa16.74■□□□□ 0.27
BRCA1-218ENST00000489037 FRMPD2Q68DX3 1309 aaPredicted RBP16.74■□□□□ 0.27
BRCA1-218ENST00000489037 PDHBP11177 359 aa16.74■□□□□ 0.27
BRCA1-218ENST00000489037 SART3Q15020 963 aaKnown RBP16.74■□□□□ 0.27
BRCA1-218ENST00000489037 TKFCQ3LXA3 575 aa16.74■□□□□ 0.27
BRCA1-218ENST00000489037 GPATCH4Q5T3I0 446 aaKnown RBP16.74■□□□□ 0.27
BRCA1-218ENST00000489037 IFIT1BQ5T764 474 aaKnown RBP16.74■□□□□ 0.27
BRCA1-218ENST00000489037 MAP3K21Q5TCX8 1036 aa16.74■□□□□ 0.27
BRCA1-218ENST00000489037 SYDE2Q5VT97 1194 aa16.74■□□□□ 0.27
BRCA1-218ENST00000489037 OLFML2BQ68BL8 750 aa16.74■□□□□ 0.27
BRCA1-218ENST00000489037 CCDC174Q6PII3 467 aa16.74■□□□□ 0.27
BRCA1-218ENST00000489037 ANKS1AQ92625 1134 aa16.74■□□□□ 0.27
BRCA1-218ENST00000489037 PNMA2Q9UL42 364 aa16.74■□□□□ 0.27
BRCA1-218ENST00000489037 MYH6P13533 1939 aa16.73■□□□□ 0.27
BRCA1-218ENST00000489037 E7EWF7 191 aa16.73■□□□□ 0.27
BRCA1-218ENST00000489037 COBLO75128 1261 aa16.73■□□□□ 0.27
BRCA1-218ENST00000489037 CNGA1P29973 690 aa16.73■□□□□ 0.27
BRCA1-218ENST00000489037 SLC16A2P36021 539 aa16.73■□□□□ 0.27
BRCA1-218ENST00000489037 BTNL9Q6UXG8 535 aa16.73■□□□□ 0.27
BRCA1-218ENST00000489037 ANKRD35Q8N283 1001 aa16.73■□□□□ 0.27
BRCA1-218ENST00000489037 ENAHQ8N8S7 591 aaPredicted RBP16.73■□□□□ 0.27
BRCA1-218ENST00000489037 FLRT1Q9NZU1 646 aa16.73■□□□□ 0.27
BRCA1-218ENST00000489037 DIS3Q9Y2L1 958 aaKnown RBP16.73■□□□□ 0.27
BRCA1-218ENST00000489037 RIPK3Q9Y572 518 aa16.73■□□□□ 0.27
BRCA1-218ENST00000489037 PGK2P07205 417 aa16.72■□□□□ 0.27
BRCA1-218ENST00000489037 ALAS1P13196 640 aa16.72■□□□□ 0.27
BRCA1-218ENST00000489037 CYP2C19P33261 490 aa16.72■□□□□ 0.27
BRCA1-218ENST00000489037 ZNF543Q08ER8 600 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms