RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 ADALQ6DHV7 355 aa13.96□□□□□ -0.18
HDAC6-230ENST00000488543 SASS6Q6UVJ0 657 aa13.96□□□□□ -0.18
HDAC6-230ENST00000488543 RBM43Q6ZSC3 357 aaKnown RBP13.96□□□□□ -0.18
HDAC6-230ENST00000488543 SIAH1Q8IUQ4 282 aa13.96□□□□□ -0.18
HDAC6-230ENST00000488543 CYTH3O43739 400 aa13.95□□□□□ -0.18
HDAC6-230ENST00000488543 GH2P01242 217 aa13.95□□□□□ -0.18
HDAC6-230ENST00000488543 GNAQP50148 359 aa13.95□□□□□ -0.18
HDAC6-230ENST00000488543 MMP14P50281 582 aa13.95□□□□□ -0.18
HDAC6-230ENST00000488543 SNW1Q13573 536 aaKnown RBP13.95□□□□□ -0.18
HDAC6-230ENST00000488543 NOLC1Q14978 699 aaKnown RBP eCLIP13.95□□□□□ -0.18
HDAC6-230ENST00000488543 USP17L2Q6R6M4 530 aa13.95□□□□□ -0.18
HDAC6-230ENST00000488543 FSIP1Q8NA03 581 aa13.95□□□□□ -0.18
HDAC6-230ENST00000488543 TNFRSF25Q93038 417 aa13.95□□□□□ -0.18
HDAC6-230ENST00000488543 GGA3Q9NZ52 723 aa13.95□□□□□ -0.18
HDAC6-230ENST00000488543 COL2A1P02458 1487 aaPredicted RBP13.95□□□□□ -0.18
HDAC6-230ENST00000488543 XBP1P17861 261 aa13.95□□□□□ -0.18
HDAC6-230ENST00000488543 ABCB5Q2M3G0 1257 aa13.95□□□□□ -0.18
HDAC6-230ENST00000488543 NBPF12Q5TAG4 269 aaPredicted RBP13.95□□□□□ -0.18
HDAC6-230ENST00000488543 CNKSR2Q8WXI2 1034 aa13.95□□□□□ -0.18
HDAC6-230ENST00000488543 CCDC17Q96LX7 622 aa13.95□□□□□ -0.18
HDAC6-230ENST00000488543 MRVI1Q9Y6F6 885 aa13.95□□□□□ -0.18
HDAC6-230ENST00000488543 FAM205CA6NFA0 338 aa13.94□□□□□ -0.18
HDAC6-230ENST00000488543 EEF2P13639 858 aaKnown RBP13.94□□□□□ -0.18
HDAC6-230ENST00000488543 KRT2P35908 639 aa13.94□□□□□ -0.18
HDAC6-230ENST00000488543 EARS2Q5JPH6 523 aaKnown RBP13.94□□□□□ -0.18
HDAC6-230ENST00000488543 HERC5Q9UII4 1024 aaKnown RBP13.94□□□□□ -0.18
HDAC6-230ENST00000488543 USP17L5A8MUK1 530 aa13.93□□□□□ -0.18
HDAC6-230ENST00000488543 GRIN3BO60391 1043 aa13.93□□□□□ -0.18
HDAC6-230ENST00000488543 PPP6R2O75170 966 aa13.93□□□□□ -0.18
HDAC6-230ENST00000488543 TTLL1O95922 423 aa13.93□□□□□ -0.18
HDAC6-230ENST00000488543 TNNI2P48788 182 aa13.93□□□□□ -0.18
HDAC6-230ENST00000488543 MAP3K11Q16584 847 aa13.93□□□□□ -0.18
HDAC6-230ENST00000488543 DPY19L2Q6NUT2 758 aa13.93□□□□□ -0.18
HDAC6-230ENST00000488543 PAXIP1Q6ZW49 1069 aaPredicted RBP13.93□□□□□ -0.18
HDAC6-230ENST00000488543 CCDC84Q86UT8 332 aaPredicted RBP13.93□□□□□ -0.18
HDAC6-230ENST00000488543 MRPS27Q92552 414 aaKnown RBP13.93□□□□□ -0.18
HDAC6-230ENST00000488543 PDCL3Q9H2J4 239 aa13.93□□□□□ -0.18
HDAC6-230ENST00000488543 ADAMTS3O15072 1205 aa13.93□□□□□ -0.18
HDAC6-230ENST00000488543 RAD21O60216 631 aa13.93□□□□□ -0.18
HDAC6-230ENST00000488543 MARCKSP29966 332 aaPredicted RBP13.93□□□□□ -0.18
HDAC6-230ENST00000488543 FAM160A1Q05DH4 1040 aa13.93□□□□□ -0.18
HDAC6-230ENST00000488543 TYRO3Q06418 890 aa13.93□□□□□ -0.18
HDAC6-230ENST00000488543 TNFAIP1Q13829 316 aa13.93□□□□□ -0.18
HDAC6-230ENST00000488543 FMR1NBQ8N0W7 255 aaPredicted RBP13.93□□□□□ -0.18
HDAC6-230ENST00000488543 LZTS2Q9BRK4 669 aa13.93□□□□□ -0.18
HDAC6-230ENST00000488543 TNMDQ9H2S6 317 aa13.93□□□□□ -0.18
HDAC6-230ENST00000488543 LMOD1P29536 600 aaPredicted RBP13.92□□□□□ -0.18
HDAC6-230ENST00000488543 ANO6Q4KMQ2 910 aa13.92□□□□□ -0.18
HDAC6-230ENST00000488543 NOM1Q5C9Z4 860 aaKnown RBP13.92□□□□□ -0.18
HDAC6-230ENST00000488543 RILPL1Q5EBL4 403 aa13.92□□□□□ -0.18
HDAC6-230ENST00000488543 CCDC73Q6ZRK6 1079 aa13.92□□□□□ -0.18
HDAC6-230ENST00000488543 SPZ1Q9BXG8 430 aa13.92□□□□□ -0.18
HDAC6-230ENST00000488543 FRMPD2Q68DX3 1309 aaPredicted RBP13.92□□□□□ -0.18
HDAC6-230ENST00000488543 KLRF2D3W0D1 207 aa13.92□□□□□ -0.18
HDAC6-230ENST00000488543 PARP1P09874 1014 aaKnown RBP13.92□□□□□ -0.18
HDAC6-230ENST00000488543 CCDC192P0DO97 292 aa13.92□□□□□ -0.18
HDAC6-230ENST00000488543 PTGS1P23219 599 aa13.92□□□□□ -0.18
HDAC6-230ENST00000488543 TYW1BQ6NUM6 668 aa13.92□□□□□ -0.18
HDAC6-230ENST00000488543 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.92□□□□□ -0.18
HDAC6-230ENST00000488543 NRBP1Q9UHY1 535 aa13.92□□□□□ -0.18
HDAC6-230ENST00000488543 PCDHB6Q9Y5E3 794 aa13.92□□□□□ -0.18
HDAC6-230ENST00000488543 POLR2AP24928 1970 aaKnown RBP13.91□□□□□ -0.18
HDAC6-230ENST00000488543 A0A1B0GVL5 298 aa13.91□□□□□ -0.18
HDAC6-230ENST00000488543 A0A1W2PRG0 241 aa13.91□□□□□ -0.18
HDAC6-230ENST00000488543 SNHG28P0DPA3 235 aa13.91□□□□□ -0.18
HDAC6-230ENST00000488543 PDHBP11177 359 aa13.91□□□□□ -0.18
HDAC6-230ENST00000488543 NDUFA8P51970 172 aa13.91□□□□□ -0.18
HDAC6-230ENST00000488543 TMEM179Q6ZVK1 233 aa13.91□□□□□ -0.18
HDAC6-230ENST00000488543 GPKOWQ92917 476 aaPredicted RBP eCLIP13.91□□□□□ -0.18
HDAC6-230ENST00000488543 UBA5Q9GZZ9 404 aa13.91□□□□□ -0.18
HDAC6-230ENST00000488543 KANSL2Q9H9L4 492 aa13.91□□□□□ -0.18
HDAC6-230ENST00000488543 CABP5Q9NP86 173 aa13.91□□□□□ -0.18
HDAC6-230ENST00000488543 SH3GLB2Q9NR46 395 aa13.91□□□□□ -0.18
HDAC6-230ENST00000488543 ADARB2Q9NS39 739 aaKnown RBP13.91□□□□□ -0.18
HDAC6-230ENST00000488543 PHF20L1A8MW92 1017 aa13.91□□□□□ -0.18
HDAC6-230ENST00000488543 TBC1D12O60347 775 aa13.91□□□□□ -0.18
HDAC6-230ENST00000488543 CMA1P23946 247 aa13.91□□□□□ -0.18
HDAC6-230ENST00000488543 ECE1P42892 770 aa13.91□□□□□ -0.18
HDAC6-230ENST00000488543 TERF1P54274 439 aa13.91□□□□□ -0.18
HDAC6-230ENST00000488543 ICA1Q05084 483 aa13.91□□□□□ -0.18
HDAC6-230ENST00000488543 LRMPQ12912 555 aa13.91□□□□□ -0.18
HDAC6-230ENST00000488543 WWC2Q6AWC2 1192 aa13.91□□□□□ -0.18
HDAC6-230ENST00000488543 GLTPD2A6NH11 291 aa13.9□□□□□ -0.18
HDAC6-230ENST00000488543 WNT7AO00755 349 aa13.9□□□□□ -0.18
HDAC6-230ENST00000488543 SMARCA1P28370 1054 aa13.9□□□□□ -0.18
HDAC6-230ENST00000488543 MAP3K10Q02779 954 aa13.9□□□□□ -0.18
HDAC6-230ENST00000488543 GLIPR1L2Q4G1C9 344 aa13.9□□□□□ -0.18
HDAC6-230ENST00000488543 SHC4Q6S5L8 630 aa13.9□□□□□ -0.18
HDAC6-230ENST00000488543 ACER1Q8TDN7 264 aa13.9□□□□□ -0.18
HDAC6-230ENST00000488543 ERCC4Q92889 916 aaPredicted RBP13.9□□□□□ -0.18
HDAC6-230ENST00000488543 CBX8Q9HC52 389 aa13.9□□□□□ -0.18
HDAC6-230ENST00000488543 VAT1LQ9HCJ6 419 aa13.9□□□□□ -0.18
HDAC6-230ENST00000488543 FAM237AA0A1B0GTK4 181 aa13.9□□□□□ -0.18
HDAC6-230ENST00000488543 STXBP3O00186 592 aa13.9□□□□□ -0.18
HDAC6-230ENST00000488543 CAP2P40123 477 aa13.9□□□□□ -0.18
HDAC6-230ENST00000488543 NLRP5P59047 1200 aa13.9□□□□□ -0.18
HDAC6-230ENST00000488543 PDE4CQ08493 712 aa13.9□□□□□ -0.18
HDAC6-230ENST00000488543 PRKG1Q13976 671 aa13.9□□□□□ -0.18
HDAC6-230ENST00000488543 TTBK2Q6IQ55 1244 aa13.9□□□□□ -0.18
HDAC6-230ENST00000488543 GLIS2Q9BZE0 524 aaPredicted RBP13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms