RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 GRIK5Q16478 980 aa20.27■□□□□ 0.83
VIM-206ENST00000487938 TPTE2Q6XPS3 522 aa20.27■□□□□ 0.83
VIM-206ENST00000487938 GPR161Q8N6U8 529 aaKnown RBP20.27■□□□□ 0.83
VIM-206ENST00000487938 SLC44A5Q8NCS7 719 aa20.27■□□□□ 0.83
VIM-206ENST00000487938 RASSF8Q8NHQ8 419 aa20.27■□□□□ 0.83
VIM-206ENST00000487938 PYM1Q9BRP8 204 aaKnown RBP20.27■□□□□ 0.83
VIM-206ENST00000487938 PARD6BQ9BYG5 372 aa20.27■□□□□ 0.83
VIM-206ENST00000487938 TMEM60Q9H2L4 133 aa20.27■□□□□ 0.83
VIM-206ENST00000487938 MAD2L2Q9UI95 211 aa20.27■□□□□ 0.83
VIM-206ENST00000487938 CCDC194A0A1B0GVG4 234 aa20.26■□□□□ 0.83
VIM-206ENST00000487938 TRIM49BA6NDI0 452 aa20.26■□□□□ 0.83
VIM-206ENST00000487938 KIF5CO60282 957 aa20.26■□□□□ 0.83
VIM-206ENST00000487938 TXLNAP40222 546 aa20.26■□□□□ 0.83
VIM-206ENST00000487938 ERVK-24P63145 666 aa20.26■□□□□ 0.83
VIM-206ENST00000487938 INF2Q27J81 1249 aa20.26■□□□□ 0.83
VIM-206ENST00000487938 SLC35G1Q2M3R5 365 aa20.26■□□□□ 0.83
VIM-206ENST00000487938 DGKHQ86XP1 1220 aa20.26■□□□□ 0.83
VIM-206ENST00000487938 ANKIB1Q9P2G1 1089 aa20.26■□□□□ 0.83
VIM-206ENST00000487938 MKRN1Q9UHC7 482 aaKnown RBP20.26■□□□□ 0.83
VIM-206ENST00000487938 PCDHA6Q9UN73 950 aa20.26■□□□□ 0.83
VIM-206ENST00000487938 PCDHA8Q9Y5H6 950 aa20.26■□□□□ 0.83
VIM-206ENST00000487938 GNPATO15228 680 aa20.25■□□□□ 0.83
VIM-206ENST00000487938 SPTY2D1Q68D10 685 aaPredicted RBP20.25■□□□□ 0.83
VIM-206ENST00000487938 DTHD1Q6ZMT9 781 aa20.25■□□□□ 0.83
VIM-206ENST00000487938 HEATR3Q7Z4Q2 680 aa20.25■□□□□ 0.83
VIM-206ENST00000487938 PUF60Q9UHX1 559 aaKnown RBP20.25■□□□□ 0.83
VIM-206ENST00000487938 ITIH6Q6UXX5 1313 aa20.25■□□□□ 0.83
VIM-206ENST00000487938 CYTH3O43739 400 aa20.25■□□□□ 0.83
VIM-206ENST00000487938 LDHBP07195 334 aaKnown RBP20.25■□□□□ 0.83
VIM-206ENST00000487938 TSPY3P0CV98 308 aa20.25■□□□□ 0.83
VIM-206ENST00000487938 TSPY8P0CW00 308 aa20.25■□□□□ 0.83
VIM-206ENST00000487938 WWC2Q6AWC2 1192 aa20.25■□□□□ 0.83
VIM-206ENST00000487938 AMIGO3Q86WK7 504 aa20.25■□□□□ 0.83
VIM-206ENST00000487938 TGFBRAP1Q8WUH2 860 aa20.25■□□□□ 0.83
VIM-206ENST00000487938 DISC1Q9NRI5 854 aa20.25■□□□□ 0.83
VIM-206ENST00000487938 ABHD10Q9NUJ1 306 aa20.25■□□□□ 0.83
VIM-206ENST00000487938 RMND1Q9NWS8 449 aa20.25■□□□□ 0.83
VIM-206ENST00000487938 CNTNAP4Q9C0A0 1308 aa20.25■□□□□ 0.83
VIM-206ENST00000487938 KIAA1551Q9HCM1 1747 aa20.24■□□□□ 0.83
VIM-206ENST00000487938 GOLGA8HP0CJ92 632 aa20.24■□□□□ 0.83
VIM-206ENST00000487938 UBXN1Q04323 297 aa20.24■□□□□ 0.83
VIM-206ENST00000487938 NAALADL2Q58DX5 795 aa20.24■□□□□ 0.83
VIM-206ENST00000487938 CC2D1AQ6P1N0 951 aaPredicted RBP20.24■□□□□ 0.83
VIM-206ENST00000487938 GOLGA1Q92805 767 aa20.24■□□□□ 0.83
VIM-206ENST00000487938 GPR101Q96P66 508 aaPredicted RBP20.24■□□□□ 0.83
VIM-206ENST00000487938 CPVLQ9H3G5 476 aa20.24■□□□□ 0.83
VIM-206ENST00000487938 SH3GLB2Q9NR46 395 aa20.24■□□□□ 0.83
VIM-206ENST00000487938 SAP30BPQ9UHR5 308 aaKnown RBP20.24■□□□□ 0.83
VIM-206ENST00000487938 STX8Q9UNK0 236 aa20.24■□□□□ 0.83
VIM-206ENST00000487938 MYH8P13535 1937 aa20.24■□□□□ 0.83
VIM-206ENST00000487938 LAMB1P07942 1786 aa20.24■□□□□ 0.83
VIM-206ENST00000487938 RPS6KA4O75676 772 aa20.24■□□□□ 0.83
VIM-206ENST00000487938 SASH3O75995 380 aa20.24■□□□□ 0.83
VIM-206ENST00000487938 PMS1P54277 932 aaKnown RBP20.24■□□□□ 0.83
VIM-206ENST00000487938 GRM4Q14833 912 aa20.24■□□□□ 0.83
VIM-206ENST00000487938 ZNF444Q8N0Y2 327 aaPredicted RBP20.24■□□□□ 0.83
VIM-206ENST00000487938 ANKRD20A12PQ8NF67 263 aa20.24■□□□□ 0.83
VIM-206ENST00000487938 CCDC51Q96ER9 411 aa20.24■□□□□ 0.83
VIM-206ENST00000487938 ZNF831Q5JPB2 1677 aa20.23■□□□□ 0.83
VIM-206ENST00000487938 M0R2N6 131 aa20.23■□□□□ 0.83
VIM-206ENST00000487938 TMTC1Q8IUR5 882 aa20.23■□□□□ 0.83
VIM-206ENST00000487938 RABGGTAQ92696 567 aa20.23■□□□□ 0.83
VIM-206ENST00000487938 IRS2Q9Y4H2 1338 aa20.23■□□□□ 0.83
VIM-206ENST00000487938 PES1O00541 588 aaKnown RBP20.23■□□□□ 0.83
VIM-206ENST00000487938 TBC1D8O95759 1140 aa20.23■□□□□ 0.83
VIM-206ENST00000487938 TFRCP02786 760 aaKnown RBP20.23■□□□□ 0.83
VIM-206ENST00000487938 PARP1P09874 1014 aaKnown RBP20.23■□□□□ 0.83
VIM-206ENST00000487938 KRT9P35527 623 aa20.23■□□□□ 0.83
VIM-206ENST00000487938 SPAG1Q07617 926 aa20.23■□□□□ 0.83
VIM-206ENST00000487938 KIF4BQ2VIQ3 1234 aa20.23■□□□□ 0.83
VIM-206ENST00000487938 IRF2BP1Q8IU81 584 aa20.23■□□□□ 0.83
VIM-206ENST00000487938 SLC35F6Q8N357 371 aa20.23■□□□□ 0.83
VIM-206ENST00000487938 CCDC88AQ3V6T2 1871 aa20.22■□□□□ 0.83
VIM-206ENST00000487938 RGL2O15211 777 aa20.22■□□□□ 0.83
VIM-206ENST00000487938 UBA7P41226 1012 aa20.22■□□□□ 0.83
VIM-206ENST00000487938 MAPKAPK5Q8IW41 473 aa20.22■□□□□ 0.83
VIM-206ENST00000487938 SLF1Q9BQI6 1058 aa20.22■□□□□ 0.83
VIM-206ENST00000487938 POLR3GO15318 223 aaPredicted RBP20.22■□□□□ 0.83
VIM-206ENST00000487938 CHMP4BP1P59074 171 aa20.22■□□□□ 0.83
VIM-206ENST00000487938 CYP26C1Q6V0L0 522 aa20.22■□□□□ 0.83
VIM-206ENST00000487938 ADSSL1Q8N142 457 aa20.22■□□□□ 0.83
VIM-206ENST00000487938 ANKS1AQ92625 1134 aa20.22■□□□□ 0.83
VIM-206ENST00000487938 CHP1Q99653 195 aa20.22■□□□□ 0.83
VIM-206ENST00000487938 TMEM47Q9BQJ4 181 aa20.22■□□□□ 0.83
VIM-206ENST00000487938 CDC23Q9UJX2 597 aa20.22■□□□□ 0.83
VIM-206ENST00000487938 H7C1D1 291 aa20.21■□□□□ 0.83
VIM-206ENST00000487938 STXBP3O00186 592 aa20.21■□□□□ 0.83
VIM-206ENST00000487938 FECHP22830 423 aa20.21■□□□□ 0.83
VIM-206ENST00000487938 SRGAP1Q7Z6B7 1085 aa20.21■□□□□ 0.83
VIM-206ENST00000487938 LRRC15Q8TF66 581 aa20.21■□□□□ 0.83
VIM-206ENST00000487938 ARHGEF1Q92888 912 aaKnown RBP20.21■□□□□ 0.83
VIM-206ENST00000487938 TTF2Q9UNY4 1162 aaKnown RBP20.21■□□□□ 0.83
VIM-206ENST00000487938 GNAQP50148 359 aa20.2■□□□□ 0.82
VIM-206ENST00000487938 NFIXQ14938 502 aa20.2■□□□□ 0.82
VIM-206ENST00000487938 FAM182BQ5T319 152 aa20.2■□□□□ 0.82
VIM-206ENST00000487938 WDR66Q8TBY9 1149 aa20.2■□□□□ 0.82
VIM-206ENST00000487938 EEF2KMTQ96G04 330 aa20.2■□□□□ 0.82
VIM-206ENST00000487938 CTAGE9A4FU28 777 aa20.2■□□□□ 0.82
VIM-206ENST00000487938 RC3H1Q5TC82 1133 aaKnown RBP20.2■□□□□ 0.82
VIM-206ENST00000487938 AMOTL1Q8IY63 956 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms