RNA–Protein interactions for RNA: ENST00000486665.5

HDAC6-229, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-229ENST00000486665 USP14P54578 494 aa14.9□□□□□ -0.02
HDAC6-229ENST00000486665 SCRN1Q12765 414 aa14.9□□□□□ -0.02
HDAC6-229ENST00000486665 TTBK2Q6IQ55 1244 aa14.9□□□□□ -0.02
HDAC6-229ENST00000486665 PRRT2Q7Z6L0 340 aaPredicted RBP14.9□□□□□ -0.02
HDAC6-229ENST00000486665 SH3TC2Q8TF17 1288 aa14.9□□□□□ -0.02
HDAC6-229ENST00000486665 DCAF4Q8WV16 495 aa14.9□□□□□ -0.02
HDAC6-229ENST00000486665 GMCL1Q96IK5 515 aa14.9□□□□□ -0.02
HDAC6-229ENST00000486665 C12orf42Q96LP6 360 aa14.9□□□□□ -0.02
HDAC6-229ENST00000486665 ZSCAN31Q96LW9 406 aaPredicted RBP14.9□□□□□ -0.02
HDAC6-229ENST00000486665 MAP3K14Q99558 947 aa14.9□□□□□ -0.02
HDAC6-229ENST00000486665 GPCPD1Q9NPB8 672 aa14.9□□□□□ -0.02
HDAC6-229ENST00000486665 MAD2L2Q9UI95 211 aa14.9□□□□□ -0.02
HDAC6-229ENST00000486665 FRMPD2Q68DX3 1309 aaPredicted RBP14.9□□□□□ -0.02
HDAC6-229ENST00000486665 TLR2O60603 784 aa14.89□□□□□ -0.03
HDAC6-229ENST00000486665 CALM1P0DP23 149 aa14.89□□□□□ -0.03
HDAC6-229ENST00000486665 CALM2P0DP24 149 aa14.89□□□□□ -0.03
HDAC6-229ENST00000486665 CALM3P0DP25 149 aa14.89□□□□□ -0.03
HDAC6-229ENST00000486665 BMP3P12645 472 aa14.89□□□□□ -0.03
HDAC6-229ENST00000486665 SLC1A4P43007 532 aa14.89□□□□□ -0.03
HDAC6-229ENST00000486665 ZNF543Q08ER8 600 aa14.89□□□□□ -0.03
HDAC6-229ENST00000486665 RTN1Q16799 776 aa14.89□□□□□ -0.03
HDAC6-229ENST00000486665 SLC9C1Q4G0N8 1177 aa14.89□□□□□ -0.03
HDAC6-229ENST00000486665 FAM83BQ5T0W9 1011 aa14.89□□□□□ -0.03
HDAC6-229ENST00000486665 KCTD1Q719H9 257 aa14.89□□□□□ -0.03
HDAC6-229ENST00000486665 CMTR1Q8N1G2 835 aaKnown RBP14.89□□□□□ -0.03
HDAC6-229ENST00000486665 SLKQ9H2G2 1235 aaPredicted RBP14.89□□□□□ -0.03
HDAC6-229ENST00000486665 CPVLQ9H3G5 476 aa14.89□□□□□ -0.03
HDAC6-229ENST00000486665 TMOD4Q9NZQ9 345 aa14.89□□□□□ -0.03
HDAC6-229ENST00000486665 NID2Q14112 1375 aa14.88□□□□□ -0.03
HDAC6-229ENST00000486665 MYH4Q9Y623 1939 aa14.88□□□□□ -0.03
HDAC6-229ENST00000486665 K7ELQ4 463 aaPredicted RBP14.88□□□□□ -0.03
HDAC6-229ENST00000486665 PLEKHA8P1O95397 391 aa14.88□□□□□ -0.03
HDAC6-229ENST00000486665 PARP1P09874 1014 aaKnown RBP14.88□□□□□ -0.03
HDAC6-229ENST00000486665 CETPP11597 493 aa14.88□□□□□ -0.03
HDAC6-229ENST00000486665 VCAM1P19320 739 aa14.88□□□□□ -0.03
HDAC6-229ENST00000486665 RCAN1P53805 252 aa14.88□□□□□ -0.03
HDAC6-229ENST00000486665 LACTBP83111 547 aaPredicted RBP14.88□□□□□ -0.03
HDAC6-229ENST00000486665 SNAPC2Q13487 334 aa14.88□□□□□ -0.03
HDAC6-229ENST00000486665 CCDC96Q2M329 555 aa14.88□□□□□ -0.03
HDAC6-229ENST00000486665 SLC35G1Q2M3R5 365 aa14.88□□□□□ -0.03
HDAC6-229ENST00000486665 TREML2Q5T2D2 321 aa14.88□□□□□ -0.03
HDAC6-229ENST00000486665 GPAT2Q6NUI2 795 aa14.88□□□□□ -0.03
HDAC6-229ENST00000486665 GADL1Q6ZQY3 521 aa14.88□□□□□ -0.03
HDAC6-229ENST00000486665 NBPF11Q86T75 865 aa14.88□□□□□ -0.03
HDAC6-229ENST00000486665 HSCBQ8IWL3 235 aa14.88□□□□□ -0.03
HDAC6-229ENST00000486665 CTCFLQ8NI51 663 aaPredicted RBP14.88□□□□□ -0.03
HDAC6-229ENST00000486665 LPAR1Q92633 364 aa14.88□□□□□ -0.03
HDAC6-229ENST00000486665 GTF3C6Q969F1 213 aa14.88□□□□□ -0.03
HDAC6-229ENST00000486665 UBA5Q9GZZ9 404 aa14.88□□□□□ -0.03
HDAC6-229ENST00000486665 RPAP3Q9H6T3 665 aaPredicted RBP14.88□□□□□ -0.03
HDAC6-229ENST00000486665 SH2B1Q9NRF2 756 aaPredicted RBP14.88□□□□□ -0.03
HDAC6-229ENST00000486665 SZT2Q5T011 3432 aa14.87□□□□□ -0.03
HDAC6-229ENST00000486665 TMEM232C9JQI7 657 aa14.87□□□□□ -0.03
HDAC6-229ENST00000486665 WDR46O15213 610 aaKnown RBP14.87□□□□□ -0.03
HDAC6-229ENST00000486665 SLC16A2P36021 539 aa14.87□□□□□ -0.03
HDAC6-229ENST00000486665 ASPRV1Q53RT3 343 aa14.87□□□□□ -0.03
HDAC6-229ENST00000486665 CCDC83Q8IWF9 413 aa14.87□□□□□ -0.03
HDAC6-229ENST00000486665 SRBD1Q8N5C6 995 aaKnown RBP14.87□□□□□ -0.03
HDAC6-229ENST00000486665 CPA4Q9UI42 421 aa14.87□□□□□ -0.03
HDAC6-229ENST00000486665 ADGRA2Q96PE1 1338 aa14.87□□□□□ -0.03
HDAC6-229ENST00000486665 KLRF2D3W0D1 207 aa14.86□□□□□ -0.03
HDAC6-229ENST00000486665 PPFIA3O75145 1194 aa14.86□□□□□ -0.03
HDAC6-229ENST00000486665 CTDNEP1O95476 244 aa14.86□□□□□ -0.03
HDAC6-229ENST00000486665 KIF5BP33176 963 aa14.86□□□□□ -0.03
HDAC6-229ENST00000486665 FUT2Q10981 343 aa14.86□□□□□ -0.03
HDAC6-229ENST00000486665 CUL4AQ13619 759 aa14.86□□□□□ -0.03
HDAC6-229ENST00000486665 NTRK3Q16288 839 aa14.86□□□□□ -0.03
HDAC6-229ENST00000486665 C17orf99Q6UX52 265 aa14.86□□□□□ -0.03
HDAC6-229ENST00000486665 TMTC3Q6ZXV5 915 aa14.86□□□□□ -0.03
HDAC6-229ENST00000486665 FASTKD5Q7L8L6 764 aaKnown RBP14.86□□□□□ -0.03
HDAC6-229ENST00000486665 CCDC82Q8N4S0 544 aa14.86□□□□□ -0.03
HDAC6-229ENST00000486665 PROCA1Q8NCQ7 364 aaPredicted RBP14.86□□□□□ -0.03
HDAC6-229ENST00000486665 TMEM106CQ9BVX2 250 aa14.86□□□□□ -0.03
HDAC6-229ENST00000486665 FBXO28Q9NVF7 368 aa14.86□□□□□ -0.03
HDAC6-229ENST00000486665 RBM28Q9NW13 759 aaKnown RBP14.86□□□□□ -0.03
HDAC6-229ENST00000486665 ISY1Q9ULR0 285 aaKnown RBP14.86□□□□□ -0.03
HDAC6-229ENST00000486665 MGAMO43451 1857 aa14.85□□□□□ -0.03
HDAC6-229ENST00000486665 CYTH3O43739 400 aa14.85□□□□□ -0.03
HDAC6-229ENST00000486665 SLC4A3P48751 1232 aa14.85□□□□□ -0.03
HDAC6-229ENST00000486665 GNAQP50148 359 aa14.85□□□□□ -0.03
HDAC6-229ENST00000486665 PPP2R5BQ15173 497 aa14.85□□□□□ -0.03
HDAC6-229ENST00000486665 MTFR1Q15390 333 aa14.85□□□□□ -0.03
HDAC6-229ENST00000486665 GPATCH4Q5T3I0 446 aaKnown RBP14.85□□□□□ -0.03
HDAC6-229ENST00000486665 BTNL9Q6UXG8 535 aa14.85□□□□□ -0.03
HDAC6-229ENST00000486665 CATSPERGQ6ZRH7 1159 aa14.85□□□□□ -0.03
HDAC6-229ENST00000486665 SHISA4Q96DD7 197 aa14.85□□□□□ -0.03
HDAC6-229ENST00000486665 TRIM47Q96LD4 638 aa14.85□□□□□ -0.03
HDAC6-229ENST00000486665 VAT1LQ9HCJ6 419 aa14.85□□□□□ -0.03
HDAC6-229ENST00000486665 CCDC196A0A1B0GTZ2 297 aa14.84□□□□□ -0.03
HDAC6-229ENST00000486665 USP17L15C9J2P7 530 aa14.84□□□□□ -0.03
HDAC6-229ENST00000486665 USP17L13C9JLJ4 530 aa14.84□□□□□ -0.03
HDAC6-229ENST00000486665 USP17L11C9JVI0 530 aa14.84□□□□□ -0.03
HDAC6-229ENST00000486665 USP17L18D6R9N7 530 aa14.84□□□□□ -0.03
HDAC6-229ENST00000486665 USP17L22D6RA61 530 aa14.84□□□□□ -0.03
HDAC6-229ENST00000486665 USP17L17D6RBQ6 530 aa14.84□□□□□ -0.03
HDAC6-229ENST00000486665 USP17L19D6RCP7 530 aa14.84□□□□□ -0.03
HDAC6-229ENST00000486665 USP17L20D6RJB6 530 aa14.84□□□□□ -0.03
HDAC6-229ENST00000486665 JAK2O60674 1132 aa14.84□□□□□ -0.03
HDAC6-229ENST00000486665 ANP32AP39687 249 aaKnown RBP14.84□□□□□ -0.03
HDAC6-229ENST00000486665 FXR1P51114 621 aaKnown RBP eCLIP14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms