RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 BRMS1Q9HCU9 246 aa16.48■□□□□ 0.23
CHD3-211ENST00000481999 SRPRBQ9Y5M8 271 aaKnown RBP16.48■□□□□ 0.23
CHD3-211ENST00000481999 CLRN2A0PK11 232 aa16.48■□□□□ 0.23
CHD3-211ENST00000481999 GDF11O95390 407 aa16.48■□□□□ 0.23
CHD3-211ENST00000481999 KRBA2Q6ZNG9 492 aa16.48■□□□□ 0.23
CHD3-211ENST00000481999 CDAN1Q8IWY9 1227 aa16.48■□□□□ 0.23
CHD3-211ENST00000481999 TTLL6Q8N841 843 aa16.48■□□□□ 0.23
CHD3-211ENST00000481999 BMP6P22004 513 aa16.47■□□□□ 0.23
CHD3-211ENST00000481999 JAG1P78504 1218 aa16.47■□□□□ 0.23
CHD3-211ENST00000481999 INF2Q27J81 1249 aa16.47■□□□□ 0.23
CHD3-211ENST00000481999 KCTD1Q719H9 257 aa16.47■□□□□ 0.23
CHD3-211ENST00000481999 LRRC8AQ8IWT6 810 aa16.47■□□□□ 0.23
CHD3-211ENST00000481999 SYMPKQ92797 1274 aaKnown RBP16.47■□□□□ 0.23
CHD3-211ENST00000481999 PCDHA5Q9Y5H7 936 aa16.47■□□□□ 0.23
CHD3-211ENST00000481999 SIPA1L1O43166 1804 aa16.47■□□□□ 0.23
CHD3-211ENST00000481999 CFAP100Q494V2 611 aa16.47■□□□□ 0.23
CHD3-211ENST00000481999 ZNF710Q8N1W2 664 aa16.47■□□□□ 0.23
CHD3-211ENST00000481999 TSC1Q92574 1164 aa16.47■□□□□ 0.23
CHD3-211ENST00000481999 COA7Q96BR5 231 aa16.47■□□□□ 0.23
CHD3-211ENST00000481999 BPIFA3Q9BQP9 254 aa16.47■□□□□ 0.23
CHD3-211ENST00000481999 BARHL2Q9NY43 387 aa16.47■□□□□ 0.23
CHD3-211ENST00000481999 PCDHA6Q9UN73 950 aa16.47■□□□□ 0.23
CHD3-211ENST00000481999 PCDHA8Q9Y5H6 950 aa16.47■□□□□ 0.23
CHD3-211ENST00000481999 C10orf71Q711Q0 1435 aa16.46■□□□□ 0.23
CHD3-211ENST00000481999 HSP90AA4PQ58FG1 418 aa16.46■□□□□ 0.23
CHD3-211ENST00000481999 DHX58Q96C10 678 aa16.46■□□□□ 0.23
CHD3-211ENST00000481999 PCDHA4Q9UN74 947 aa16.46■□□□□ 0.23
CHD3-211ENST00000481999 IGKV6D-41A0A0C4DH26 115 aa16.46■□□□□ 0.22
CHD3-211ENST00000481999 FAM237AA0A1B0GTK4 181 aa16.46■□□□□ 0.22
CHD3-211ENST00000481999 M0R2N6 131 aa16.46■□□□□ 0.22
CHD3-211ENST00000481999 PSMD14O00487 310 aa16.46■□□□□ 0.22
CHD3-211ENST00000481999 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.46■□□□□ 0.22
CHD3-211ENST00000481999 SHTN1A0MZ66 631 aa16.45■□□□□ 0.22
CHD3-211ENST00000481999 TCP10L2B9ZVM9 353 aa16.45■□□□□ 0.22
CHD3-211ENST00000481999 HLA-DOAP06340 250 aa16.45■□□□□ 0.22
CHD3-211ENST00000481999 PTGER2P43116 358 aa16.45■□□□□ 0.22
CHD3-211ENST00000481999 NAPAP54920 295 aa16.45■□□□□ 0.22
CHD3-211ENST00000481999 RRP1BQ14684 758 aaKnown RBP16.45■□□□□ 0.22
CHD3-211ENST00000481999 PTPN21Q16825 1174 aa16.45■□□□□ 0.22
CHD3-211ENST00000481999 LARGE2Q8N3Y3 721 aa16.45■□□□□ 0.22
CHD3-211ENST00000481999 C16orf45Q96MC5 204 aaPredicted RBP16.45■□□□□ 0.22
CHD3-211ENST00000481999 PP2D1A8MPX8 630 aa16.45■□□□□ 0.22
CHD3-211ENST00000481999 CTIFO43310 598 aaKnown RBP16.45■□□□□ 0.22
CHD3-211ENST00000481999 AFMP43652 599 aa16.45■□□□□ 0.22
CHD3-211ENST00000481999 NOVP48745 357 aa16.45■□□□□ 0.22
CHD3-211ENST00000481999 MDM2Q00987 491 aaPredicted RBP16.45■□□□□ 0.22
CHD3-211ENST00000481999 SGIP1Q9BQI5 828 aa16.45■□□□□ 0.22
CHD3-211ENST00000481999 TMEM60Q9H2L4 133 aa16.45■□□□□ 0.22
CHD3-211ENST00000481999 SPON1Q9HCB6 807 aa16.45■□□□□ 0.22
CHD3-211ENST00000481999 TMEM260Q9NX78 707 aa16.45■□□□□ 0.22
CHD3-211ENST00000481999 TTLL1O95922 423 aa16.44■□□□□ 0.22
CHD3-211ENST00000481999 TNNT1P13805 278 aa16.44■□□□□ 0.22
CHD3-211ENST00000481999 TAL1P17542 331 aaPredicted RBP16.44■□□□□ 0.22
CHD3-211ENST00000481999 GNAQP50148 359 aa16.44■□□□□ 0.22
CHD3-211ENST00000481999 TPD52L1Q16890 204 aaPredicted RBP16.44■□□□□ 0.22
CHD3-211ENST00000481999 CCDC178Q5BJE1 867 aa16.44■□□□□ 0.22
CHD3-211ENST00000481999 PAXBP1Q9Y5B6 917 aa16.44■□□□□ 0.22
CHD3-211ENST00000481999 SMTNL1A8MU46 457 aa16.44■□□□□ 0.22
CHD3-211ENST00000481999 ACTN4O43707 911 aaKnown RBP16.44■□□□□ 0.22
CHD3-211ENST00000481999 GSDMDP57764 484 aa16.44■□□□□ 0.22
CHD3-211ENST00000481999 ATP2C1P98194 919 aaPredicted RBP16.44■□□□□ 0.22
CHD3-211ENST00000481999 SEPT2Q15019 361 aa16.44■□□□□ 0.22
CHD3-211ENST00000481999 SPZ1Q9BXG8 430 aa16.44■□□□□ 0.22
CHD3-211ENST00000481999 BIN2Q9UBW5 565 aaPredicted RBP16.44■□□□□ 0.22
CHD3-211ENST00000481999 CEP131Q9UPN4 1083 aa16.44■□□□□ 0.22
CHD3-211ENST00000481999 SMCO2A6NFE2 343 aa16.43■□□□□ 0.22
CHD3-211ENST00000481999 PPP1R11O60927 126 aaPredicted RBP16.43■□□□□ 0.22
CHD3-211ENST00000481999 SNAP25P60880 206 aa16.43■□□□□ 0.22
CHD3-211ENST00000481999 ARID5BQ14865 1188 aa16.43■□□□□ 0.22
CHD3-211ENST00000481999 TIGD1Q96MW7 591 aa16.43■□□□□ 0.22
CHD3-211ENST00000481999 NUP88Q99567 741 aaPredicted RBP16.43■□□□□ 0.22
CHD3-211ENST00000481999 CCDC94Q9BW85 323 aaPredicted RBP16.43■□□□□ 0.22
CHD3-211ENST00000481999 TUBE1Q9UJT0 475 aa16.43■□□□□ 0.22
CHD3-211ENST00000481999 PLIN4Q96Q06 1357 aa16.43■□□□□ 0.22
CHD3-211ENST00000481999 MYH4Q9Y623 1939 aa16.43■□□□□ 0.22
CHD3-211ENST00000481999 CCDC194A0A1B0GVG4 234 aa16.43■□□□□ 0.22
CHD3-211ENST00000481999 SKILP12757 684 aa16.43■□□□□ 0.22
CHD3-211ENST00000481999 ATP1A3P13637 1013 aa16.43■□□□□ 0.22
CHD3-211ENST00000481999 NLRP12P59046 1061 aa16.43■□□□□ 0.22
CHD3-211ENST00000481999 TPM4P67936 248 aa16.43■□□□□ 0.22
CHD3-211ENST00000481999 CCDC93Q567U6 631 aa16.43■□□□□ 0.22
CHD3-211ENST00000481999 JAKMIP3Q5VZ66 844 aa16.43■□□□□ 0.22
CHD3-211ENST00000481999 FILIP1Q7Z7B0 1213 aa16.43■□□□□ 0.22
CHD3-211ENST00000481999 RRP36Q96EU6 259 aaKnown RBP16.43■□□□□ 0.22
CHD3-211ENST00000481999 SERPINA10Q9UK55 444 aa16.43■□□□□ 0.22
CHD3-211ENST00000481999 EEF2P13639 858 aaKnown RBP16.42■□□□□ 0.22
CHD3-211ENST00000481999 POLD1P28340 1107 aa16.42■□□□□ 0.22
CHD3-211ENST00000481999 LMOD1P29536 600 aaPredicted RBP16.42■□□□□ 0.22
CHD3-211ENST00000481999 NCAPHQ15003 741 aa16.42■□□□□ 0.22
CHD3-211ENST00000481999 POSTNQ15063 836 aa16.42■□□□□ 0.22
CHD3-211ENST00000481999 CCDC96Q2M329 555 aa16.42■□□□□ 0.22
CHD3-211ENST00000481999 SIAH1Q8IUQ4 282 aa16.42■□□□□ 0.22
CHD3-211ENST00000481999 UIMC1Q96RL1 719 aa16.42■□□□□ 0.22
CHD3-211ENST00000481999 PLIN2Q99541 437 aa16.42■□□□□ 0.22
CHD3-211ENST00000481999 IDI2Q9BXS1 227 aa16.42■□□□□ 0.22
CHD3-211ENST00000481999 IMPACTQ9P2X3 320 aa16.42■□□□□ 0.22
CHD3-211ENST00000481999 CALML3P27482 149 aa16.42■□□□□ 0.22
CHD3-211ENST00000481999 CERKLQ49MI3 558 aaPredicted RBP16.42■□□□□ 0.22
CHD3-211ENST00000481999 ADGRF4Q8IZF3 695 aa16.42■□□□□ 0.22
CHD3-211ENST00000481999 C4orf32Q8N8J7 132 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms