RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 SPRYD7Q5W111 196 aa9.56□□□□□ -0.88
SYNE1-225ENST00000481502 MCTP2Q6DN12 878 aa9.56□□□□□ -0.88
SYNE1-225ENST00000481502 DLK2Q6UY11 383 aa9.56□□□□□ -0.88
SYNE1-225ENST00000481502 CATSPERGQ6ZRH7 1159 aa9.56□□□□□ -0.88
SYNE1-225ENST00000481502 SRBD1Q8N5C6 995 aaKnown RBP9.56□□□□□ -0.88
SYNE1-225ENST00000481502 FAM184AQ8NB25 1140 aa9.56□□□□□ -0.88
SYNE1-225ENST00000481502 RRP36Q96EU6 259 aaKnown RBP9.56□□□□□ -0.88
SYNE1-225ENST00000481502 WNK4Q96J92 1243 aa9.56□□□□□ -0.88
SYNE1-225ENST00000481502 ZNF408Q9H9D4 720 aa9.56□□□□□ -0.88
SYNE1-225ENST00000481502 SEC63Q9UGP8 760 aaKnown RBP9.56□□□□□ -0.88
SYNE1-225ENST00000481502 PNMA3Q9UL41 463 aa9.56□□□□□ -0.88
SYNE1-225ENST00000481502 ADAMTS5Q9UNA0 930 aa9.56□□□□□ -0.88
SYNE1-225ENST00000481502 AGTPBP1Q9UPW5 1226 aa9.56□□□□□ -0.88
SYNE1-225ENST00000481502 PTPDC1A2A3K4 754 aa9.55□□□□□ -0.88
SYNE1-225ENST00000481502 TRIM75PA6NK02 468 aa9.55□□□□□ -0.88
SYNE1-225ENST00000481502 TMEM232C9JQI7 657 aa9.55□□□□□ -0.88
SYNE1-225ENST00000481502 ZBTB5O15062 677 aa9.55□□□□□ -0.88
SYNE1-225ENST00000481502 APLP1P51693 650 aa9.55□□□□□ -0.88
SYNE1-225ENST00000481502 HMGCS2P54868 508 aa9.55□□□□□ -0.88
SYNE1-225ENST00000481502 PFKFB3Q16875 520 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-225ENST00000481502 CCDC96Q2M329 555 aa9.55□□□□□ -0.88
SYNE1-225ENST00000481502 SHROOM1Q2M3G4 852 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-225ENST00000481502 SYDE2Q5VT97 1194 aa9.55□□□□□ -0.88
SYNE1-225ENST00000481502 OTUD7BQ6GQQ9 843 aa9.55□□□□□ -0.88
SYNE1-225ENST00000481502 PPP1R18Q6NYC8 613 aa9.55□□□□□ -0.88
SYNE1-225ENST00000481502 NOL8Q76FK4 1167 aaKnown RBP9.55□□□□□ -0.88
SYNE1-225ENST00000481502 ANKRD23Q86SG2 305 aa9.55□□□□□ -0.88
SYNE1-225ENST00000481502 CLEC10AQ8IUN9 316 aa9.55□□□□□ -0.88
SYNE1-225ENST00000481502 STAG2Q8N3U4 1231 aa9.55□□□□□ -0.88
SYNE1-225ENST00000481502 NECAB1Q8N987 351 aa9.55□□□□□ -0.88
SYNE1-225ENST00000481502 CCDC148Q8NFR7 591 aa9.55□□□□□ -0.88
SYNE1-225ENST00000481502 OTUD5Q96G74 571 aa9.55□□□□□ -0.88
SYNE1-225ENST00000481502 CLMNQ96JQ2 1002 aa9.55□□□□□ -0.88
SYNE1-225ENST00000481502 SLF1Q9BQI6 1058 aa9.55□□□□□ -0.88
SYNE1-225ENST00000481502 LARP6Q9BRS8 491 aaKnown RBP9.55□□□□□ -0.88
SYNE1-225ENST00000481502 MYL10Q9BUA6 226 aa9.55□□□□□ -0.88
SYNE1-225ENST00000481502 NCOA5Q9HCD5 579 aaKnown RBP9.55□□□□□ -0.88
SYNE1-225ENST00000481502 MAP3K20Q9NYL2 800 aaKnown RBP9.55□□□□□ -0.88
SYNE1-225ENST00000481502 ORC3Q9UBD5 711 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-225ENST00000481502 PPP1R9AQ9ULJ8 1098 aa9.55□□□□□ -0.88
SYNE1-225ENST00000481502 CNTNAP5Q8WYK1 1306 aa9.55□□□□□ -0.88
SYNE1-225ENST00000481502 PHIPQ8WWQ0 1821 aa9.54□□□□□ -0.88
SYNE1-225ENST00000481502 ESYT2A0FGR8 921 aa9.54□□□□□ -0.88
SYNE1-225ENST00000481502 RASSF10A6NK89 507 aa9.54□□□□□ -0.88
SYNE1-225ENST00000481502 CYTH3O43739 400 aa9.54□□□□□ -0.88
SYNE1-225ENST00000481502 SLC10A3P09131 477 aa9.54□□□□□ -0.88
SYNE1-225ENST00000481502 SCG2P13521 617 aa9.54□□□□□ -0.88
SYNE1-225ENST00000481502 FDPSP14324 419 aaKnown RBP9.54□□□□□ -0.88
SYNE1-225ENST00000481502 RXRAP19793 462 aa9.54□□□□□ -0.88
SYNE1-225ENST00000481502 OSBPP22059 807 aa9.54□□□□□ -0.88
SYNE1-225ENST00000481502 CALML3P27482 149 aa9.54□□□□□ -0.88
SYNE1-225ENST00000481502 GJB2P29033 226 aa9.54□□□□□ -0.88
SYNE1-225ENST00000481502 COPB2P35606 906 aa9.54□□□□□ -0.88
SYNE1-225ENST00000481502 DDIT3P35638 169 aa9.54□□□□□ -0.88
SYNE1-225ENST00000481502 ZNF157P51786 506 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-225ENST00000481502 TKFCQ3LXA3 575 aa9.54□□□□□ -0.88
SYNE1-225ENST00000481502 FAM83BQ5T0W9 1011 aa9.54□□□□□ -0.88
SYNE1-225ENST00000481502 MOB2Q70IA6 237 aa9.54□□□□□ -0.88
SYNE1-225ENST00000481502 KCTD1Q719H9 257 aa9.54□□□□□ -0.88
SYNE1-225ENST00000481502 ADGRF4Q8IZF3 695 aa9.54□□□□□ -0.88
SYNE1-225ENST00000481502 FBXO18Q8NFZ0 1043 aa9.54□□□□□ -0.88
SYNE1-225ENST00000481502 MS4A4AQ96JQ5 239 aa9.54□□□□□ -0.88
SYNE1-225ENST00000481502 AMNQ9BXJ7 453 aa9.54□□□□□ -0.88
SYNE1-225ENST00000481502 RANBP17Q9H2T7 1088 aaKnown RBP9.54□□□□□ -0.88
SYNE1-225ENST00000481502 JMJD4Q9H9V9 463 aa9.54□□□□□ -0.88
SYNE1-225ENST00000481502 FZD1Q9UP38 647 aa9.54□□□□□ -0.88
SYNE1-225ENST00000481502 V9GY48 417 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-225ENST00000481502 ZBED4O75132 1171 aa9.53□□□□□ -0.88
SYNE1-225ENST00000481502 PLEKHA8P1O95397 391 aa9.53□□□□□ -0.88
SYNE1-225ENST00000481502 ALDH1A1P00352 501 aa9.53□□□□□ -0.88
SYNE1-225ENST00000481502 GNA11P29992 359 aa9.53□□□□□ -0.88
SYNE1-225ENST00000481502 TM4SF4P48230 202 aa9.53□□□□□ -0.88
SYNE1-225ENST00000481502 GCLCP48506 637 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-225ENST00000481502 FMR1Q06787 632 aaKnown RBP eCLIP9.53□□□□□ -0.88
SYNE1-225ENST00000481502 SREBF2Q12772 1141 aa9.53□□□□□ -0.88
SYNE1-225ENST00000481502 NOGQ13253 232 aa9.53□□□□□ -0.88
SYNE1-225ENST00000481502 MOGSQ13724 837 aa9.53□□□□□ -0.88
SYNE1-225ENST00000481502 TRIM29Q14134 588 aa9.53□□□□□ -0.88
SYNE1-225ENST00000481502 PKN1Q16512 942 aa9.53□□□□□ -0.88
SYNE1-225ENST00000481502 LARP1BQ659C4 914 aaKnown RBP9.53□□□□□ -0.88
SYNE1-225ENST00000481502 RASAL3Q86YV0 1011 aa9.53□□□□□ -0.88
SYNE1-225ENST00000481502 CCDC144CPQ8IYA2 1237 aa9.53□□□□□ -0.88
SYNE1-225ENST00000481502 SPICE1Q8N0Z3 855 aa9.53□□□□□ -0.88
SYNE1-225ENST00000481502 BICD2Q8TD16 824 aa9.53□□□□□ -0.88
SYNE1-225ENST00000481502 SLC26A6Q9BXS9 759 aa9.53□□□□□ -0.88
SYNE1-225ENST00000481502 ZSCAN16Q9H4T2 348 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-225ENST00000481502 RPAP3Q9H6T3 665 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-225ENST00000481502 SLC38A10Q9HBR0 1119 aa9.53□□□□□ -0.88
SYNE1-225ENST00000481502 BARHL2Q9NY43 387 aa9.53□□□□□ -0.88
SYNE1-225ENST00000481502 PRR12Q9ULL5 1215 aa9.53□□□□□ -0.88
SYNE1-225ENST00000481502 ATP6V1DQ9Y5K8 247 aa9.53□□□□□ -0.88
SYNE1-225ENST00000481502 OTOFQ9HC10 1997 aa9.53□□□□□ -0.88
SYNE1-225ENST00000481502 WDR33Q9C0J8 1336 aaKnown RBP9.53□□□□□ -0.88
SYNE1-225ENST00000481502 VWA5AO00534 786 aa9.52□□□□□ -0.89
SYNE1-225ENST00000481502 STX6O43752 255 aa9.52□□□□□ -0.89
SYNE1-225ENST00000481502 RAD21O60216 631 aa9.52□□□□□ -0.89
SYNE1-225ENST00000481502 FLOT1O75955 427 aa9.52□□□□□ -0.89
SYNE1-225ENST00000481502 ICAM1P05362 532 aa9.52□□□□□ -0.89
SYNE1-225ENST00000481502 GOLGA8HP0CJ92 632 aa9.52□□□□□ -0.89
SYNE1-225ENST00000481502 SYT1P21579 422 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms