RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 ZNF18P17022 549 aa14.78□□□□□ -0.04
SEC13-216ENST00000479868 NAPAP54920 295 aa14.78□□□□□ -0.04
SEC13-216ENST00000479868 EIF6P56537 245 aaKnown RBP14.78□□□□□ -0.04
SEC13-216ENST00000479868 DCAF8Q5TAQ9 597 aa14.78□□□□□ -0.04
SEC13-216ENST00000479868 ZNF772Q68DY9 489 aaPredicted RBP14.78□□□□□ -0.04
SEC13-216ENST00000479868 APOBEC3HQ6NTF7 200 aaKnown RBP14.78□□□□□ -0.04
SEC13-216ENST00000479868 CDC42EP5Q6NZY7 148 aa14.78□□□□□ -0.04
SEC13-216ENST00000479868 UBA5Q9GZZ9 404 aa14.78□□□□□ -0.04
SEC13-216ENST00000479868 TMEM60Q9H2L4 133 aa14.78□□□□□ -0.04
SEC13-216ENST00000479868 INTS13Q9NVM9 706 aa14.78□□□□□ -0.04
SEC13-216ENST00000479868 FRMPD2Q68DX3 1309 aaPredicted RBP14.77□□□□□ -0.04
SEC13-216ENST00000479868 CBFA2T2O43439 604 aa14.77□□□□□ -0.04
SEC13-216ENST00000479868 PDHBP11177 359 aa14.77□□□□□ -0.04
SEC13-216ENST00000479868 CD44P16070 742 aaKnown RBP14.77□□□□□ -0.04
SEC13-216ENST00000479868 TPD52L1Q16890 204 aaPredicted RBP14.77□□□□□ -0.04
SEC13-216ENST00000479868 PDXDC2PQ6P474 469 aa14.77□□□□□ -0.04
SEC13-216ENST00000479868 LRRC47Q8N1G4 583 aaKnown RBP14.77□□□□□ -0.04
SEC13-216ENST00000479868 IQUBQ8NA54 791 aa14.77□□□□□ -0.04
SEC13-216ENST00000479868 CCDC150Q8NCX0 1101 aa14.77□□□□□ -0.04
SEC13-216ENST00000479868 RRP36Q96EU6 259 aaKnown RBP14.77□□□□□ -0.04
SEC13-216ENST00000479868 GSDMAQ96QA5 445 aa14.77□□□□□ -0.04
SEC13-216ENST00000479868 PIGSQ96S52 555 aa14.77□□□□□ -0.04
SEC13-216ENST00000479868 MTRQ99707 1265 aa14.77□□□□□ -0.04
SEC13-216ENST00000479868 TMX4Q9H1E5 349 aaPredicted RBP14.77□□□□□ -0.04
SEC13-216ENST00000479868 SERPINB13Q9UIV8 391 aa14.77□□□□□ -0.04
SEC13-216ENST00000479868 SFPQP23246 707 aaKnown RBP eCLIP14.77□□□□□ -0.05
SEC13-216ENST00000479868 LONP1P36776 959 aaKnown RBP14.77□□□□□ -0.05
SEC13-216ENST00000479868 HHIPL2Q6UWX4 724 aa14.77□□□□□ -0.05
SEC13-216ENST00000479868 SMYD4Q8IYR2 804 aaPredicted RBP14.77□□□□□ -0.05
SEC13-216ENST00000479868 TEKT1Q969V4 418 aa14.77□□□□□ -0.05
SEC13-216ENST00000479868 BLZF1Q9H2G9 400 aa14.77□□□□□ -0.05
SEC13-216ENST00000479868 SAMSN1Q9NSI8 373 aaKnown RBP14.77□□□□□ -0.05
SEC13-216ENST00000479868 SCN9AQ15858 1988 aa14.76□□□□□ -0.05
SEC13-216ENST00000479868 IGKV6D-41A0A0C4DH26 115 aa14.76□□□□□ -0.05
SEC13-216ENST00000479868 SLURP2P0DP57 97 aa14.76□□□□□ -0.05
SEC13-216ENST00000479868 ERCC5P28715 1186 aaPredicted RBP14.76□□□□□ -0.05
SEC13-216ENST00000479868 NFIAQ12857 509 aa14.76□□□□□ -0.05
SEC13-216ENST00000479868 VSTM4Q8IW00 320 aa14.76□□□□□ -0.05
SEC13-216ENST00000479868 SLX4Q8IY92 1834 aa14.76□□□□□ -0.05
SEC13-216ENST00000479868 SMCO2A6NFE2 343 aa14.76□□□□□ -0.05
SEC13-216ENST00000479868 DYNC1I1O14576 645 aa14.76□□□□□ -0.05
SEC13-216ENST00000479868 TNNT1P13805 278 aa14.76□□□□□ -0.05
SEC13-216ENST00000479868 SMARCA1P28370 1054 aa14.76□□□□□ -0.05
SEC13-216ENST00000479868 SHMT1P34896 483 aa14.76□□□□□ -0.05
SEC13-216ENST00000479868 KLHL10Q6JEL2 608 aa14.76□□□□□ -0.05
SEC13-216ENST00000479868 C2CD5Q86YS7 1000 aa14.76□□□□□ -0.05
SEC13-216ENST00000479868 FAM177A1Q8N128 213 aaPredicted RBP14.76□□□□□ -0.05
SEC13-216ENST00000479868 RIOX1Q9H6W3 641 aa14.76□□□□□ -0.05
SEC13-216ENST00000479868 SEC63Q9UGP8 760 aaKnown RBP14.76□□□□□ -0.05
SEC13-216ENST00000479868 PCDHAC2Q9Y5I4 1007 aa14.76□□□□□ -0.05
SEC13-216ENST00000479868 PP2D1A8MPX8 630 aa14.75□□□□□ -0.05
SEC13-216ENST00000479868 CRKP46108 304 aa14.75□□□□□ -0.05
SEC13-216ENST00000479868 CUL4BQ13620 913 aa14.75□□□□□ -0.05
SEC13-216ENST00000479868 KARSQ15046 597 aaKnown RBP14.75□□□□□ -0.05
SEC13-216ENST00000479868 PODNQ7Z5L7 613 aa14.75□□□□□ -0.05
SEC13-216ENST00000479868 ZFPM1Q8IX07 1006 aa14.75□□□□□ -0.05
SEC13-216ENST00000479868 CCDC12Q8WUD4 166 aaPredicted RBP14.75□□□□□ -0.05
SEC13-216ENST00000479868 TRMT1Q9NXH9 659 aaKnown RBP14.75□□□□□ -0.05
SEC13-216ENST00000479868 ZNF219Q9P2Y4 722 aaPredicted RBP14.75□□□□□ -0.05
SEC13-216ENST00000479868 TNS1Q9HBL0 1735 aaKnown RBP14.75□□□□□ -0.05
SEC13-216ENST00000479868 RIOK3O14730 519 aaKnown RBP14.75□□□□□ -0.05
SEC13-216ENST00000479868 CDK11BP21127 795 aaKnown RBP14.75□□□□□ -0.05
SEC13-216ENST00000479868 GTF2F1P35269 517 aaKnown RBP eCLIP14.75□□□□□ -0.05
SEC13-216ENST00000479868 DTHD1Q6ZMT9 781 aa14.75□□□□□ -0.05
SEC13-216ENST00000479868 CCAR2Q8N163 923 aaKnown RBP14.75□□□□□ -0.05
SEC13-216ENST00000479868 TSC1Q92574 1164 aa14.75□□□□□ -0.05
SEC13-216ENST00000479868 C6orf50Q9HD87 102 aa14.75□□□□□ -0.05
SEC13-216ENST00000479868 PPP1R3GB7ZBB8 358 aa14.74□□□□□ -0.05
SEC13-216ENST00000479868 SNHG28P0DPA3 235 aa14.74□□□□□ -0.05
SEC13-216ENST00000479868 CACNB3P54284 484 aa14.74□□□□□ -0.05
SEC13-216ENST00000479868 STX17P56962 302 aa14.74□□□□□ -0.05
SEC13-216ENST00000479868 RBM10P98175 930 aaKnown RBP14.74□□□□□ -0.05
SEC13-216ENST00000479868 KIAA0825Q8IV33 1275 aa14.74□□□□□ -0.05
SEC13-216ENST00000479868 PYM1Q9BRP8 204 aaKnown RBP14.74□□□□□ -0.05
SEC13-216ENST00000479868 SWAP70Q9UH65 585 aa14.74□□□□□ -0.05
SEC13-216ENST00000479868 TTLL1O95922 423 aa14.74□□□□□ -0.05
SEC13-216ENST00000479868 GNA11P29992 359 aa14.74□□□□□ -0.05
SEC13-216ENST00000479868 GOLGA8FQ08AF8 430 aa14.74□□□□□ -0.05
SEC13-216ENST00000479868 GOLGA8DPQ0D2H9 430 aa14.74□□□□□ -0.05
SEC13-216ENST00000479868 E4F1Q66K89 784 aaPredicted RBP14.74□□□□□ -0.05
SEC13-216ENST00000479868 KRT25Q7Z3Z0 450 aa14.74□□□□□ -0.05
SEC13-216ENST00000479868 DISC1Q9NRI5 854 aa14.74□□□□□ -0.05
SEC13-216ENST00000479868 GREB1LQ9C091 1923 aaPredicted RBP14.73□□□□□ -0.05
SEC13-216ENST00000479868 MYH4Q9Y623 1939 aa14.73□□□□□ -0.05
SEC13-216ENST00000479868 SYNRGQ9UMZ2 1314 aa14.73□□□□□ -0.05
SEC13-216ENST00000479868 ZNF646O15015 1829 aaPredicted RBP14.73□□□□□ -0.05
SEC13-216ENST00000479868 H0YIN7 160 aa14.73□□□□□ -0.05
SEC13-216ENST00000479868 GTPBP6O43824 516 aaPredicted RBP14.73□□□□□ -0.05
SEC13-216ENST00000479868 CHRNA5P30532 468 aa14.73□□□□□ -0.05
SEC13-216ENST00000479868 TXLNAP40222 546 aa14.73□□□□□ -0.05
SEC13-216ENST00000479868 NONOQ15233 471 aaKnown RBP eCLIP14.73□□□□□ -0.05
SEC13-216ENST00000479868 LETM2Q2VYF4 491 aa14.73□□□□□ -0.05
SEC13-216ENST00000479868 ASPRV1Q53RT3 343 aa14.73□□□□□ -0.05
SEC13-216ENST00000479868 NAALADL2Q58DX5 795 aa14.73□□□□□ -0.05
SEC13-216ENST00000479868 CT47A1Q5JQC4 288 aaPredicted RBP14.73□□□□□ -0.05
SEC13-216ENST00000479868 NYAP1Q6ZVC0 841 aa14.73□□□□□ -0.05
SEC13-216ENST00000479868 ZDHHC15Q96MV8 337 aa14.73□□□□□ -0.05
SEC13-216ENST00000479868 GPCPD1Q9NPB8 672 aa14.73□□□□□ -0.05
SEC13-216ENST00000479868 KCND1Q9NSA2 647 aa14.73□□□□□ -0.05
SEC13-216ENST00000479868 BIN2Q9UBW5 565 aaPredicted RBP14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms