RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 TICAM2Q86XR7 235 aa16.77■□□□□ 0.27
UPF3A-204ENST00000475218 HSPD1P10809 573 aaKnown RBP16.76■□□□□ 0.27
UPF3A-204ENST00000475218 FCER1AP12319 257 aa16.76■□□□□ 0.27
UPF3A-204ENST00000475218 ZNF792Q3KQV3 632 aa16.76■□□□□ 0.27
UPF3A-204ENST00000475218 PRAMEF19Q5SWL8 479 aa16.76■□□□□ 0.27
UPF3A-204ENST00000475218 PRPF38AQ8NAV1 312 aaKnown RBP16.76■□□□□ 0.27
UPF3A-204ENST00000475218 ATP2A1O14983 1001 aa16.75■□□□□ 0.27
UPF3A-204ENST00000475218 SLFN13Q68D06 897 aa16.75■□□□□ 0.27
UPF3A-204ENST00000475218 MMP19Q99542 508 aa16.75■□□□□ 0.27
UPF3A-204ENST00000475218 SLC38A10Q9HBR0 1119 aa16.75■□□□□ 0.27
UPF3A-204ENST00000475218 NR2E3Q9Y5X4 410 aa16.75■□□□□ 0.27
UPF3A-204ENST00000475218 TRIM6-TRIM34B2RNG4 842 aa16.74■□□□□ 0.27
UPF3A-204ENST00000475218 ORC4O43929 436 aa16.74■□□□□ 0.27
UPF3A-204ENST00000475218 SLC3A2P08195 630 aaKnown RBP16.74■□□□□ 0.27
UPF3A-204ENST00000475218 SDSP20132 328 aa16.74■□□□□ 0.27
UPF3A-204ENST00000475218 PDE4AP27815 886 aa16.74■□□□□ 0.27
UPF3A-204ENST00000475218 SNRNP48Q6IEG0 339 aaKnown RBP16.74■□□□□ 0.27
UPF3A-204ENST00000475218 RILPL2Q969X0 211 aa16.74■□□□□ 0.27
UPF3A-204ENST00000475218 TEX13BQ9BXU2 312 aa16.74■□□□□ 0.27
UPF3A-204ENST00000475218 LAMA2P24043 3122 aaKnown RBP16.74■□□□□ 0.27
UPF3A-204ENST00000475218 ZMYM6O95789 1325 aa16.74■□□□□ 0.27
UPF3A-204ENST00000475218 CCDC171Q6TFL3 1326 aa16.74■□□□□ 0.27
UPF3A-204ENST00000475218 SMCHD1A6NHR9 2005 aa16.74■□□□□ 0.27
UPF3A-204ENST00000475218 DNAJC25-GNG10A0A024R161 153 aa16.74■□□□□ 0.27
UPF3A-204ENST00000475218 CNGA1P29973 690 aa16.74■□□□□ 0.27
UPF3A-204ENST00000475218 LRRC26Q2I0M4 334 aa16.74■□□□□ 0.27
UPF3A-204ENST00000475218 ANO1Q5XXA6 986 aa16.74■□□□□ 0.27
UPF3A-204ENST00000475218 C7orf61Q8IZ16 206 aa16.74■□□□□ 0.27
UPF3A-204ENST00000475218 KIFC2Q96AC6 838 aa16.74■□□□□ 0.27
UPF3A-204ENST00000475218 CHMP4CQ96CF2 233 aa16.74■□□□□ 0.27
UPF3A-204ENST00000475218 GMCL1Q96IK5 515 aa16.74■□□□□ 0.27
UPF3A-204ENST00000475218 BMP3P12645 472 aa16.73■□□□□ 0.27
UPF3A-204ENST00000475218 TAL1P17542 331 aaPredicted RBP16.73■□□□□ 0.27
UPF3A-204ENST00000475218 FGD4Q96M96 766 aa16.73■□□□□ 0.27
UPF3A-204ENST00000475218 RAVER2Q9HCJ3 691 aaKnown RBP16.73■□□□□ 0.27
UPF3A-204ENST00000475218 FEM1BQ9UK73 627 aa16.73■□□□□ 0.27
UPF3A-204ENST00000475218 TSPY2A6NKD2 308 aa16.72■□□□□ 0.27
UPF3A-204ENST00000475218 SEPT4O43236 478 aa16.72■□□□□ 0.27
UPF3A-204ENST00000475218 IRX6P78412 446 aaPredicted RBP16.72■□□□□ 0.27
UPF3A-204ENST00000475218 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.72■□□□□ 0.27
UPF3A-204ENST00000475218 TBC1D10CQ8IV04 446 aa16.72■□□□□ 0.27
UPF3A-204ENST00000475218 CPXCR1Q8N123 301 aa16.72■□□□□ 0.27
UPF3A-204ENST00000475218 DIS3Q9Y2L1 958 aaKnown RBP16.72■□□□□ 0.27
UPF3A-204ENST00000475218 LAMA4Q16363 1823 aa16.72■□□□□ 0.27
UPF3A-204ENST00000475218 ZNF536O15090 1300 aa16.72■□□□□ 0.27
UPF3A-204ENST00000475218 RANBP6O60518 1105 aaKnown RBP16.72■□□□□ 0.27
UPF3A-204ENST00000475218 MSCO60682 206 aa16.72■□□□□ 0.27
UPF3A-204ENST00000475218 MCCP23508 829 aa16.72■□□□□ 0.27
UPF3A-204ENST00000475218 HAND2P61296 217 aa16.72■□□□□ 0.27
UPF3A-204ENST00000475218 KCTD2Q14681 263 aa16.72■□□□□ 0.27
UPF3A-204ENST00000475218 IL25Q9H293 177 aa16.72■□□□□ 0.27
UPF3A-204ENST00000475218 ZMYND8Q9ULU4 1186 aaPredicted RBP16.72■□□□□ 0.27
UPF3A-204ENST00000475218 STX8Q9UNK0 236 aa16.72■□□□□ 0.27
UPF3A-204ENST00000475218 TMEM232C9JQI7 657 aa16.71■□□□□ 0.27
UPF3A-204ENST00000475218 COPB2P35606 906 aa16.71■□□□□ 0.27
UPF3A-204ENST00000475218 GDF15Q99988 308 aa16.71■□□□□ 0.27
UPF3A-204ENST00000475218 TINF2Q9BSI4 451 aa16.71■□□□□ 0.27
UPF3A-204ENST00000475218 SLC5A4Q9NY91 659 aa16.71■□□□□ 0.27
UPF3A-204ENST00000475218 DNM1LO00429 736 aa16.7■□□□□ 0.26
UPF3A-204ENST00000475218 ZBED4O75132 1171 aa16.7■□□□□ 0.26
UPF3A-204ENST00000475218 ZNF865P0CJ78 1059 aaPredicted RBP16.7■□□□□ 0.26
UPF3A-204ENST00000475218 SYN1P17600 705 aa16.7■□□□□ 0.26
UPF3A-204ENST00000475218 GJC2Q5T442 439 aaPredicted RBP16.7■□□□□ 0.26
UPF3A-204ENST00000475218 RCSD1Q6JBY9 416 aa16.7■□□□□ 0.26
UPF3A-204ENST00000475218 KCTD1Q719H9 257 aa16.7■□□□□ 0.26
UPF3A-204ENST00000475218 MCM3APO60318 1980 aa16.69■□□□□ 0.26
UPF3A-204ENST00000475218 PLA2G6O60733 806 aa16.69■□□□□ 0.26
UPF3A-204ENST00000475218 GSPT1P15170 499 aaKnown RBP16.69■□□□□ 0.26
UPF3A-204ENST00000475218 OAZ1P54368 228 aa16.69■□□□□ 0.26
UPF3A-204ENST00000475218 SNAP25P60880 206 aa16.69■□□□□ 0.26
UPF3A-204ENST00000475218 STAG1Q8WVM7 1258 aa16.69■□□□□ 0.26
UPF3A-204ENST00000475218 SNAI1O95863 264 aaPredicted RBP16.69■□□□□ 0.26
UPF3A-204ENST00000475218 SLC1A4P43007 532 aa16.69■□□□□ 0.26
UPF3A-204ENST00000475218 SLC4A3P48751 1232 aa16.69■□□□□ 0.26
UPF3A-204ENST00000475218 STAT2P52630 851 aa16.69■□□□□ 0.26
UPF3A-204ENST00000475218 RRP12Q5JTH9 1297 aaKnown RBP16.69■□□□□ 0.26
UPF3A-204ENST00000475218 CWC27Q6UX04 472 aaKnown RBP16.69■□□□□ 0.26
UPF3A-204ENST00000475218 LENG1Q96BZ8 264 aaPredicted RBP16.69■□□□□ 0.26
UPF3A-204ENST00000475218 AGBL1Q96MI9 1066 aa16.69■□□□□ 0.26
UPF3A-204ENST00000475218 TMEM47Q9BQJ4 181 aa16.69■□□□□ 0.26
UPF3A-204ENST00000475218 SENP6Q9GZR1 1112 aaPredicted RBP16.69■□□□□ 0.26
UPF3A-204ENST00000475218 NEDD4P46934 1319 aa16.69■□□□□ 0.26
UPF3A-204ENST00000475218 LCTP09848 1927 aa16.68■□□□□ 0.26
UPF3A-204ENST00000475218 AKNAD1Q5T1N1 836 aa16.68■□□□□ 0.26
UPF3A-204ENST00000475218 MAMDC4Q6UXC1 1216 aa16.68■□□□□ 0.26
UPF3A-204ENST00000475218 TCP11L1Q9NUJ3 509 aa16.68■□□□□ 0.26
UPF3A-204ENST00000475218 NRBP1Q9UHY1 535 aa16.68■□□□□ 0.26
UPF3A-204ENST00000475218 PRR12Q9ULL5 1215 aa16.68■□□□□ 0.26
UPF3A-204ENST00000475218 LRRC41Q15345 812 aa16.67■□□□□ 0.26
UPF3A-204ENST00000475218 TTBK2Q6IQ55 1244 aa16.67■□□□□ 0.26
UPF3A-204ENST00000475218 FAM160B2Q86V87 743 aa16.67■□□□□ 0.26
UPF3A-204ENST00000475218 ASTN1O14525 1302 aa16.66■□□□□ 0.26
UPF3A-204ENST00000475218 MAGEA10P43363 369 aaPredicted RBP16.66■□□□□ 0.26
UPF3A-204ENST00000475218 ATN1P54259 1190 aaPredicted RBP16.66■□□□□ 0.26
UPF3A-204ENST00000475218 CHST13Q8NET6 341 aa16.66■□□□□ 0.26
UPF3A-204ENST00000475218 CHURC1Q8WUH1 139 aa16.66■□□□□ 0.26
UPF3A-204ENST00000475218 TOMM22Q9NS69 142 aa16.66■□□□□ 0.26
UPF3A-204ENST00000475218 HOMER2Q9NSB8 354 aa16.66■□□□□ 0.26
UPF3A-204ENST00000475218 MTMR7Q9Y216 660 aa16.66■□□□□ 0.26
UPF3A-204ENST00000475218 SYNGAP1Q96PV0 1343 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms