RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 FAM184BQ9ULE4 1060 aa22.25■■□□□ 1.15
SHH-205ENST00000472308 MYH8P13535 1937 aa22.25■■□□□ 1.15
SHH-205ENST00000472308 MROH7Q68CQ1 1323 aa22.25■■□□□ 1.15
SHH-205ENST00000472308 SYNGAP1Q96PV0 1343 aa22.25■■□□□ 1.15
SHH-205ENST00000472308 DUSP11O75319 330 aaKnown RBP22.24■■□□□ 1.15
SHH-205ENST00000472308 EEF2P13639 858 aaKnown RBP22.24■■□□□ 1.15
SHH-205ENST00000472308 PSRC1Q6PGN9 363 aaPredicted RBP22.24■■□□□ 1.15
SHH-205ENST00000472308 CCDC174Q6PII3 467 aa22.24■■□□□ 1.15
SHH-205ENST00000472308 MAMDC4Q6UXC1 1216 aa22.24■■□□□ 1.15
SHH-205ENST00000472308 AACSQ86V21 672 aa22.24■■□□□ 1.15
SHH-205ENST00000472308 GLT1D1Q96MS3 346 aa22.24■■□□□ 1.15
SHH-205ENST00000472308 CXXC1Q9P0U4 656 aaPredicted RBP22.24■■□□□ 1.15
SHH-205ENST00000472308 ZHX1Q9UKY1 873 aaPredicted RBP22.24■■□□□ 1.15
SHH-205ENST00000472308 TRANK1O15050 2925 aa22.23■■□□□ 1.15
SHH-205ENST00000472308 DNAJC25-GNG10A0A024R161 153 aa22.23■■□□□ 1.15
SHH-205ENST00000472308 CYP2D7A0A087X1C5 515 aa22.23■■□□□ 1.15
SHH-205ENST00000472308 PRKAB2O43741 272 aa22.23■■□□□ 1.15
SHH-205ENST00000472308 COPB2P35606 906 aa22.23■■□□□ 1.15
SHH-205ENST00000472308 FAM126BQ8IXS8 530 aa22.23■■□□□ 1.15
SHH-205ENST00000472308 NECAB3Q96P71 396 aaPredicted RBP22.23■■□□□ 1.15
SHH-205ENST00000472308 PPP1R12CQ9BZL4 782 aa22.23■■□□□ 1.15
SHH-205ENST00000472308 ARMT1Q9H993 441 aa22.23■■□□□ 1.15
SHH-205ENST00000472308 YBX2Q9Y2T7 364 aaKnown RBP22.23■■□□□ 1.15
SHH-205ENST00000472308 MYO9BQ13459 2157 aa22.23■■□□□ 1.15
SHH-205ENST00000472308 ASGR1P07306 291 aa22.22■■□□□ 1.15
SHH-205ENST00000472308 IGFBP4P22692 258 aa22.22■■□□□ 1.15
SHH-205ENST00000472308 CDK8P49336 464 aa22.22■■□□□ 1.15
SHH-205ENST00000472308 TTF1Q15361 905 aaPredicted RBP22.22■■□□□ 1.15
SHH-205ENST00000472308 FAM83BQ5T0W9 1011 aa22.22■■□□□ 1.15
SHH-205ENST00000472308 TMEM199Q8N511 208 aa22.22■■□□□ 1.15
SHH-205ENST00000472308 FAM122AQ96E09 287 aa22.22■■□□□ 1.15
SHH-205ENST00000472308 CCDC17Q96LX7 622 aa22.22■■□□□ 1.15
SHH-205ENST00000472308 UPF3AQ9H1J1 476 aaKnown RBP22.22■■□□□ 1.15
SHH-205ENST00000472308 NKX2-4Q9H2Z4 354 aa22.22■■□□□ 1.15
SHH-205ENST00000472308 RIPK3Q9Y572 518 aa22.22■■□□□ 1.15
SHH-205ENST00000472308 ARVCFO00192 962 aa22.21■■□□□ 1.15
SHH-205ENST00000472308 C6orf222P0C671 652 aaPredicted RBP22.21■■□□□ 1.15
SHH-205ENST00000472308 RAB30Q15771 203 aa22.21■■□□□ 1.15
SHH-205ENST00000472308 SLFNL1Q499Z3 407 aa22.21■■□□□ 1.15
SHH-205ENST00000472308 HERVK_113Q902F9 699 aa22.21■■□□□ 1.15
SHH-205ENST00000472308 EXOC6BQ9Y2D4 811 aa22.21■■□□□ 1.15
SHH-205ENST00000472308 BAZ2AQ9UIF9 1905 aaKnown RBP22.2■■□□□ 1.14
SHH-205ENST00000472308 A0A0U1RQG5 324 aaPredicted RBP22.2■■□□□ 1.14
SHH-205ENST00000472308 GOLIM4O00461 696 aa22.2■■□□□ 1.14
SHH-205ENST00000472308 CTAGE5O15320 804 aa22.2■■□□□ 1.14
SHH-205ENST00000472308 CYP2C18P33260 490 aa22.2■■□□□ 1.14
SHH-205ENST00000472308 C12orf60Q5U649 245 aa22.2■■□□□ 1.14
SHH-205ENST00000472308 ZKSCAN2Q63HK3 967 aa22.2■■□□□ 1.14
SHH-205ENST00000472308 C16orf86Q6ZW13 317 aa22.2■■□□□ 1.14
SHH-205ENST00000472308 FGD4Q96M96 766 aa22.2■■□□□ 1.14
SHH-205ENST00000472308 TEX13BQ9BXU2 312 aa22.2■■□□□ 1.14
SHH-205ENST00000472308 IL23AQ9NPF7 189 aa22.2■■□□□ 1.14
SHH-205ENST00000472308 MSRAQ9UJ68 235 aa22.2■■□□□ 1.14
SHH-205ENST00000472308 GBF1Q92538 1859 aa22.2■■□□□ 1.14
SHH-205ENST00000472308 CD4P01730 458 aa22.19■■□□□ 1.14
SHH-205ENST00000472308 GJA9P57773 515 aa22.19■■□□□ 1.14
SHH-205ENST00000472308 ACVR2BQ13705 512 aa22.19■■□□□ 1.14
SHH-205ENST00000472308 SNRNP48Q6IEG0 339 aaKnown RBP22.19■■□□□ 1.14
SHH-205ENST00000472308 CEP85Q6P2H3 762 aa22.19■■□□□ 1.14
SHH-205ENST00000472308 ZNF467Q7Z7K2 595 aaPredicted RBP22.19■■□□□ 1.14
SHH-205ENST00000472308 PCSK9Q8NBP7 692 aaKnown RBP22.19■■□□□ 1.14
SHH-205ENST00000472308 NUP88Q99567 741 aaPredicted RBP22.19■■□□□ 1.14
SHH-205ENST00000472308 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.19■■□□□ 1.14
SHH-205ENST00000472308 KANSL2Q9H9L4 492 aa22.19■■□□□ 1.14
SHH-205ENST00000472308 GOPCQ9HD26 462 aa22.19■■□□□ 1.14
SHH-205ENST00000472308 IL1RAPL2Q9NP60 686 aa22.19■■□□□ 1.14
SHH-205ENST00000472308 UMODL1Q5DID0 1318 aa22.18■■□□□ 1.14
SHH-205ENST00000472308 MBD4O95243 580 aa22.18■■□□□ 1.14
SHH-205ENST00000472308 BMP1P13497 986 aa22.18■■□□□ 1.14
SHH-205ENST00000472308 CCDC144BQ3MJ40 725 aa22.18■■□□□ 1.14
SHH-205ENST00000472308 ATP8A2Q9NTI2 1148 aa22.18■■□□□ 1.14
SHH-205ENST00000472308 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.18■■□□□ 1.14
SHH-205ENST00000472308 APBB1O00213 710 aa22.17■■□□□ 1.14
SHH-205ENST00000472308 RLBP1P12271 317 aa22.17■■□□□ 1.14
SHH-205ENST00000472308 HOXD11P31277 338 aaPredicted RBP22.17■■□□□ 1.14
SHH-205ENST00000472308 TFF2Q03403 129 aa22.17■■□□□ 1.14
SHH-205ENST00000472308 ERC1Q8IUD2 1116 aa22.17■■□□□ 1.14
SHH-205ENST00000472308 IL27Q8NEV9 243 aa22.17■■□□□ 1.14
SHH-205ENST00000472308 VTI1AQ96AJ9 217 aa22.17■■□□□ 1.14
SHH-205ENST00000472308 DDX11Q96FC9 970 aa22.17■■□□□ 1.14
SHH-205ENST00000472308 DNAJC2Q99543 621 aaKnown RBP22.17■■□□□ 1.14
SHH-205ENST00000472308 SLF1Q9BQI6 1058 aa22.17■■□□□ 1.14
SHH-205ENST00000472308 KATNBL1Q9H079 304 aa22.17■■□□□ 1.14
SHH-205ENST00000472308 SLC28A3Q9HAS3 691 aa22.17■■□□□ 1.14
SHH-205ENST00000472308 GREB1LQ9C091 1923 aaPredicted RBP22.17■■□□□ 1.14
SHH-205ENST00000472308 USP17L12C9JPN9 530 aa22.16■■□□□ 1.14
SHH-205ENST00000472308 USP17L21D6R901 530 aa22.16■■□□□ 1.14
SHH-205ENST00000472308 RAD21O60216 631 aa22.16■■□□□ 1.14
SHH-205ENST00000472308 GNASQ5JWF2 1037 aa22.16■■□□□ 1.14
SHH-205ENST00000472308 TLR3O15455 904 aaKnown RBP22.15■■□□□ 1.14
SHH-205ENST00000472308 CHGBP05060 677 aa22.15■■□□□ 1.14
SHH-205ENST00000472308 ADD2P35612 726 aa22.15■■□□□ 1.14
SHH-205ENST00000472308 RABGGTBP53611 331 aa22.15■■□□□ 1.14
SHH-205ENST00000472308 NKX3-2P78367 333 aa22.15■■□□□ 1.14
SHH-205ENST00000472308 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.15■■□□□ 1.14
SHH-205ENST00000472308 OTOP2Q7RTS6 562 aa22.15■■□□□ 1.14
SHH-205ENST00000472308 ITPRIPQ8IWB1 547 aa22.15■■□□□ 1.14
SHH-205ENST00000472308 SLC43A3Q8NBI5 491 aa22.15■■□□□ 1.14
SHH-205ENST00000472308 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.15■■□□□ 1.14
SHH-205ENST00000472308 ABHD16BQ9H3Z7 469 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms