RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 CERKLQ49MI3 558 aaPredicted RBP8.63□□□□□ -1.03
USP54-210ENST00000466048 ENAHQ8N8S7 591 aaPredicted RBP8.63□□□□□ -1.03
USP54-210ENST00000466048 BRWD3Q6RI45 1802 aa8.63□□□□□ -1.03
USP54-210ENST00000466048 MYO5AQ9Y4I1 1855 aaKnown RBP8.63□□□□□ -1.03
USP54-210ENST00000466048 SRGNP10124 158 aa8.63□□□□□ -1.03
USP54-210ENST00000466048 IBSPP21815 317 aaPredicted RBP8.63□□□□□ -1.03
USP54-210ENST00000466048 TCP10Q12799 353 aa8.63□□□□□ -1.03
USP54-210ENST00000466048 KANK3Q6NY19 840 aa8.63□□□□□ -1.03
USP54-210ENST00000466048 ANKS1AQ92625 1134 aa8.63□□□□□ -1.03
USP54-210ENST00000466048 PHKBQ93100 1093 aa8.63□□□□□ -1.03
USP54-210ENST00000466048 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.63□□□□□ -1.03
USP54-210ENST00000466048 ZNF341Q9BYN7 854 aa8.63□□□□□ -1.03
USP54-210ENST00000466048 SPC25Q9HBM1 224 aa8.63□□□□□ -1.03
USP54-210ENST00000466048 SAP30BPQ9UHR5 308 aaKnown RBP8.63□□□□□ -1.03
USP54-210ENST00000466048 RGPD3A6NKT7 1758 aaPredicted RBP8.63□□□□□ -1.03
USP54-210ENST00000466048 RGPD4Q7Z3J3 1758 aa8.63□□□□□ -1.03
USP54-210ENST00000466048 SPDYE4A6NLX3 237 aa8.63□□□□□ -1.03
USP54-210ENST00000466048 LIG1P18858 919 aa8.63□□□□□ -1.03
USP54-210ENST00000466048 RXRAP19793 462 aa8.63□□□□□ -1.03
USP54-210ENST00000466048 SLC1A4P43007 532 aa8.63□□□□□ -1.03
USP54-210ENST00000466048 NTRK3Q16288 839 aa8.63□□□□□ -1.03
USP54-210ENST00000466048 MAPKAPK5Q8IW41 473 aa8.63□□□□□ -1.03
USP54-210ENST00000466048 SCLT1Q96NL6 688 aa8.63□□□□□ -1.03
USP54-210ENST00000466048 GPBP1L1Q9HC44 474 aaPredicted RBP8.63□□□□□ -1.03
USP54-210ENST00000466048 VAT1LQ9HCJ6 419 aa8.63□□□□□ -1.03
USP54-210ENST00000466048 SH3GLB2Q9NR46 395 aa8.63□□□□□ -1.03
USP54-210ENST00000466048 CCDC181Q5TID7 509 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 RBM43Q6ZSC3 357 aaKnown RBP8.62□□□□□ -1.03
USP54-210ENST00000466048 AMIGO3Q86WK7 504 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 DIS3L2Q8IYB7 885 aaKnown RBP8.62□□□□□ -1.03
USP54-210ENST00000466048 SLC10A4Q96EP9 437 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 COPB2P35606 906 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 LMAN1P49257 510 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 TFAP4Q01664 338 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 CEP135Q66GS9 1140 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 TMTC3Q6ZXV5 915 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 KRI1Q8N9T8 703 aaKnown RBP8.62□□□□□ -1.03
USP54-210ENST00000466048 SH3RF3Q8TEJ3 882 aaPredicted RBP8.62□□□□□ -1.03
USP54-210ENST00000466048 IPO4Q8TEX9 1081 aaKnown RBP8.62□□□□□ -1.03
USP54-210ENST00000466048 VTI1AQ96AJ9 217 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 MYL10Q9BUA6 226 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 TANGO6Q9C0B7 1094 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 KANSL2Q9H9L4 492 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 ADCY5O95622 1261 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 TRAPPC10P48553 1259 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 ARHGAP29Q52LW3 1261 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 HOMEZQ8IX15 550 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 PGBD1Q96JS3 809 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 ARFGAP3Q9NP61 516 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 USP25Q9UHP3 1055 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 PCDHA7Q9UN72 937 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 MORC2Q9Y6X9 1032 aaPredicted RBP8.62□□□□□ -1.03
USP54-210ENST00000466048 LAMB1P07942 1786 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 GAKO14976 1311 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 TCP10L2B9ZVM9 353 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 URI1O94763 535 aaPredicted RBP8.62□□□□□ -1.03
USP54-210ENST00000466048 ASNSP08243 561 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 FDX1P10109 184 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 SCNN1DP51172 638 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 NAPAP54920 295 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 AMPD3Q01432 767 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 CAMK4Q16566 473 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 ABCB5Q2M3G0 1257 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 CFAP100Q494V2 611 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 TXNRD3Q86VQ6 643 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 CCDC150Q8NCX0 1101 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 CSRNP1Q96S65 589 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 RRAGDQ9NQL2 400 aaPredicted RBP8.62□□□□□ -1.03
USP54-210ENST00000466048 SERPINB13Q9UIV8 391 aa8.62□□□□□ -1.03
USP54-210ENST00000466048 TCHHQ07283 1943 aa8.61□□□□□ -1.03
USP54-210ENST00000466048 TRIM75PA6NK02 468 aa8.61□□□□□ -1.03
USP54-210ENST00000466048 KIF5CO60282 957 aa8.61□□□□□ -1.03
USP54-210ENST00000466048 CHRNA5P30532 468 aa8.61□□□□□ -1.03
USP54-210ENST00000466048 CCDC82Q8N4S0 544 aa8.61□□□□□ -1.03
USP54-210ENST00000466048 RTFDC1Q9BY42 306 aaPredicted RBP8.61□□□□□ -1.03
USP54-210ENST00000466048 CLIP2Q9UDT6 1046 aa8.61□□□□□ -1.03
USP54-210ENST00000466048 MYH15Q9Y2K3 1946 aa8.61□□□□□ -1.03
USP54-210ENST00000466048 hCG_1984214I3L0E3 225 aa8.61□□□□□ -1.03
USP54-210ENST00000466048 GPATCH4Q5T3I0 446 aaKnown RBP8.61□□□□□ -1.03
USP54-210ENST00000466048 HHIPL2Q6UWX4 724 aa8.61□□□□□ -1.03
USP54-210ENST00000466048 MCF2L2Q86YR7 1114 aa8.61□□□□□ -1.03
USP54-210ENST00000466048 ZNF713Q8N859 430 aaPredicted RBP8.61□□□□□ -1.03
USP54-210ENST00000466048 PDLIM2Q96JY6 352 aa8.61□□□□□ -1.03
USP54-210ENST00000466048 PRDM1O75626 825 aa8.61□□□□□ -1.03
USP54-210ENST00000466048 EZRP15311 586 aaKnown RBP8.61□□□□□ -1.03
USP54-210ENST00000466048 SMARCA1P28370 1054 aa8.61□□□□□ -1.03
USP54-210ENST00000466048 CASQ1P31415 396 aa8.61□□□□□ -1.03
USP54-210ENST00000466048 EPS15P42566 896 aa8.61□□□□□ -1.03
USP54-210ENST00000466048 SYKP43405 635 aa8.61□□□□□ -1.03
USP54-210ENST00000466048 AOC3Q16853 763 aa8.61□□□□□ -1.03
USP54-210ENST00000466048 ZNF827Q17R98 1081 aa8.61□□□□□ -1.03
USP54-210ENST00000466048 APBB1IPQ7Z5R6 666 aaPredicted RBP8.61□□□□□ -1.03
USP54-210ENST00000466048 GTF3C2Q8WUA4 911 aaPredicted RBP8.61□□□□□ -1.03
USP54-210ENST00000466048 CALML4Q96GE6 196 aa8.61□□□□□ -1.03
USP54-210ENST00000466048 C16orf45Q96MC5 204 aaPredicted RBP8.61□□□□□ -1.03
USP54-210ENST00000466048 PAIP2Q9BPZ3 127 aaKnown RBP8.61□□□□□ -1.03
USP54-210ENST00000466048 MRIQ9BWK5 157 aa8.61□□□□□ -1.03
USP54-210ENST00000466048 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.61□□□□□ -1.03
USP54-210ENST00000466048 ZNF277Q9NRM2 450 aaPredicted RBP8.61□□□□□ -1.03
USP54-210ENST00000466048 POLLQ9UGP5 575 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms