RNA–Protein interactions for RNA: ENST00000465877.1

COL5A1-206, Transcript of collagen type V alpha 1 chain, humanhuman

TSL 3

Gene COL5A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-206ENST00000465877 KCTD1Q719H9 257 aa15.18■□□□□ 0.02
COL5A1-206ENST00000465877 NCAPG2Q86XI2 1143 aa15.18■□□□□ 0.02
COL5A1-206ENST00000465877 PRPF38AQ8NAV1 312 aaKnown RBP15.18■□□□□ 0.02
COL5A1-206ENST00000465877 TRIB2Q92519 343 aa15.18■□□□□ 0.02
COL5A1-206ENST00000465877 USP6NLQ92738 828 aa15.18■□□□□ 0.02
COL5A1-206ENST00000465877 MCM3APO60318 1980 aa15.18■□□□□ 0.02
COL5A1-206ENST00000465877 SMCHD1A6NHR9 2005 aa15.17■□□□□ 0.02
COL5A1-206ENST00000465877 POTEFA5A3E0 1075 aa15.17■□□□□ 0.02
COL5A1-206ENST00000465877 SLC15A5A6NIM6 579 aa15.17■□□□□ 0.02
COL5A1-206ENST00000465877 IKQ13123 557 aaPredicted RBP15.17■□□□□ 0.02
COL5A1-206ENST00000465877 MAP2K5Q13163 448 aa15.17■□□□□ 0.02
COL5A1-206ENST00000465877 STOX1Q6ZVD7 989 aa15.17■□□□□ 0.02
COL5A1-206ENST00000465877 FAM160B2Q86V87 743 aa15.17■□□□□ 0.02
COL5A1-206ENST00000465877 RIOX2Q8IUF8 465 aa15.17■□□□□ 0.02
COL5A1-206ENST00000465877 ENAHQ8N8S7 591 aaPredicted RBP15.17■□□□□ 0.02
COL5A1-206ENST00000465877 TTC14Q96N46 770 aa15.17■□□□□ 0.02
COL5A1-206ENST00000465877 ZSCAN10Q96SZ4 725 aaPredicted RBP15.17■□□□□ 0.02
COL5A1-206ENST00000465877 UBAC1Q9BSL1 405 aa15.17■□□□□ 0.02
COL5A1-206ENST00000465877 TEX13BQ9BXU2 312 aa15.17■□□□□ 0.02
COL5A1-206ENST00000465877 MROH8Q9H579 483 aa15.17■□□□□ 0.02
COL5A1-206ENST00000465877 SLC38A10Q9HBR0 1119 aa15.17■□□□□ 0.02
COL5A1-206ENST00000465877 BIN2Q9UBW5 565 aaPredicted RBP15.17■□□□□ 0.02
COL5A1-206ENST00000465877 E7EWF7 191 aa15.16■□□□□ 0.02
COL5A1-206ENST00000465877 PLA2G6O60733 806 aa15.16■□□□□ 0.02
COL5A1-206ENST00000465877 SLC25A27O95847 323 aa15.16■□□□□ 0.02
COL5A1-206ENST00000465877 PDHBP11177 359 aa15.16■□□□□ 0.02
COL5A1-206ENST00000465877 XRCC5P13010 732 aaKnown RBP15.16■□□□□ 0.02
COL5A1-206ENST00000465877 ZKSCAN1P17029 563 aaPredicted RBP15.16■□□□□ 0.02
COL5A1-206ENST00000465877 COPB2P35606 906 aa15.16■□□□□ 0.02
COL5A1-206ENST00000465877 TRDNQ13061 729 aa15.16■□□□□ 0.02
COL5A1-206ENST00000465877 CCDC178Q5BJE1 867 aa15.16■□□□□ 0.02
COL5A1-206ENST00000465877 SNRNP48Q6IEG0 339 aaKnown RBP15.16■□□□□ 0.02
COL5A1-206ENST00000465877 CYB5R4Q7L1T6 521 aa15.16■□□□□ 0.02
COL5A1-206ENST00000465877 RALYLQ86SE5 291 aaKnown RBP15.16■□□□□ 0.02
COL5A1-206ENST00000465877 TMEM106CQ9BVX2 250 aa15.16■□□□□ 0.02
COL5A1-206ENST00000465877 ZSWIM5Q9P217 1185 aa15.16■□□□□ 0.02
COL5A1-206ENST00000465877 CTDP1Q9Y5B0 961 aaPredicted RBP15.16■□□□□ 0.02
COL5A1-206ENST00000465877 FRMPD2Q68DX3 1309 aaPredicted RBP15.16■□□□□ 0.02
COL5A1-206ENST00000465877 ATP2A1O14983 1001 aa15.15■□□□□ 0.02
COL5A1-206ENST00000465877 ZBED4O75132 1171 aa15.15■□□□□ 0.02
COL5A1-206ENST00000465877 SNHG28P0DPA3 235 aa15.15■□□□□ 0.02
COL5A1-206ENST00000465877 CCL5P13501 91 aa15.15■□□□□ 0.02
COL5A1-206ENST00000465877 ADORA2AP29274 412 aa15.15■□□□□ 0.02
COL5A1-206ENST00000465877 STAT3P40763 770 aa15.15■□□□□ 0.02
COL5A1-206ENST00000465877 RGS19P49795 217 aa15.15■□□□□ 0.02
COL5A1-206ENST00000465877 CCL14Q16627 93 aa15.15■□□□□ 0.02
COL5A1-206ENST00000465877 DGKHQ86XP1 1220 aa15.15■□□□□ 0.02
COL5A1-206ENST00000465877 PNMA1Q8ND90 353 aa15.15■□□□□ 0.02
COL5A1-206ENST00000465877 NCOA7Q8NI08 942 aa15.15■□□□□ 0.02
COL5A1-206ENST00000465877 CHURC1Q8WUH1 139 aa15.15■□□□□ 0.02
COL5A1-206ENST00000465877 STRNO43815 780 aa15.14■□□□□ 0.01
COL5A1-206ENST00000465877 HOXC6P09630 235 aa15.14■□□□□ 0.01
COL5A1-206ENST00000465877 FDX1P10109 184 aa15.14■□□□□ 0.01
COL5A1-206ENST00000465877 OAZ1P54368 228 aa15.14■□□□□ 0.01
COL5A1-206ENST00000465877 TRIM32Q13049 653 aa15.14■□□□□ 0.01
COL5A1-206ENST00000465877 TRMT44Q8IYL2 757 aaKnown RBP15.14■□□□□ 0.01
COL5A1-206ENST00000465877 CPXCR1Q8N123 301 aa15.14■□□□□ 0.01
COL5A1-206ENST00000465877 UNC93B1Q9H1C4 597 aa15.14■□□□□ 0.01
COL5A1-206ENST00000465877 KAT14Q9H8E8 782 aa15.14■□□□□ 0.01
COL5A1-206ENST00000465877 RAVER2Q9HCJ3 691 aaKnown RBP15.14■□□□□ 0.01
COL5A1-206ENST00000465877 PRR12Q9ULL5 1215 aa15.14■□□□□ 0.01
COL5A1-206ENST00000465877 ALPK3Q96L96 1907 aa15.13■□□□□ 0.01
COL5A1-206ENST00000465877 SLC27A2O14975 620 aa15.13■□□□□ 0.01
COL5A1-206ENST00000465877 FCER1AP12319 257 aa15.13■□□□□ 0.01
COL5A1-206ENST00000465877 PRKAR2AP13861 404 aaKnown RBP15.13■□□□□ 0.01
COL5A1-206ENST00000465877 ZNF543Q08ER8 600 aa15.13■□□□□ 0.01
COL5A1-206ENST00000465877 SEC23AQ15436 765 aa15.13■□□□□ 0.01
COL5A1-206ENST00000465877 IFIT1BQ5T764 474 aaKnown RBP15.13■□□□□ 0.01
COL5A1-206ENST00000465877 SYDE2Q5VT97 1194 aa15.13■□□□□ 0.01
COL5A1-206ENST00000465877 CREB3L3Q68CJ9 461 aa15.13■□□□□ 0.01
COL5A1-206ENST00000465877 MB21D2Q8IYB1 491 aaPredicted RBP15.13■□□□□ 0.01
COL5A1-206ENST00000465877 ABRAQ8N0Z2 381 aa15.13■□□□□ 0.01
COL5A1-206ENST00000465877 ANKS1AQ92625 1134 aa15.13■□□□□ 0.01
COL5A1-206ENST00000465877 SHISA4Q96DD7 197 aa15.13■□□□□ 0.01
COL5A1-206ENST00000465877 MMP19Q99542 508 aa15.13■□□□□ 0.01
COL5A1-206ENST00000465877 RNF208Q9H0X6 261 aa15.13■□□□□ 0.01
COL5A1-206ENST00000465877 RIPK3Q9Y572 518 aa15.13■□□□□ 0.01
COL5A1-206ENST00000465877 ZNF536O15090 1300 aa15.13■□□□□ 0.01
COL5A1-206ENST00000465877 SLC16A2P36021 539 aa15.12■□□□□ 0.01
COL5A1-206ENST00000465877 KCTD2Q14681 263 aa15.12■□□□□ 0.01
COL5A1-206ENST00000465877 NECTIN1Q15223 517 aa15.12■□□□□ 0.01
COL5A1-206ENST00000465877 GPATCH4Q5T3I0 446 aaKnown RBP15.12■□□□□ 0.01
COL5A1-206ENST00000465877 MAP3K21Q5TCX8 1036 aa15.12■□□□□ 0.01
COL5A1-206ENST00000465877 TTBK2Q6IQ55 1244 aa15.12■□□□□ 0.01
COL5A1-206ENST00000465877 BTNL9Q6UXG8 535 aa15.12■□□□□ 0.01
COL5A1-206ENST00000465877 DPP9Q86TI2 863 aa15.12■□□□□ 0.01
COL5A1-206ENST00000465877 NPLOC4Q8TAT6 608 aa15.12■□□□□ 0.01
COL5A1-206ENST00000465877 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.12■□□□□ 0.01
COL5A1-206ENST00000465877 RANBP17Q9H2T7 1088 aaKnown RBP15.12■□□□□ 0.01
COL5A1-206ENST00000465877 GPCPD1Q9NPB8 672 aa15.12■□□□□ 0.01
COL5A1-206ENST00000465877 PAK6Q9NQU5 681 aaPredicted RBP15.12■□□□□ 0.01
COL5A1-206ENST00000465877 FLRT1Q9NZU1 646 aa15.12■□□□□ 0.01
COL5A1-206ENST00000465877 GJB1P08034 283 aa15.11■□□□□ 0.01
COL5A1-206ENST00000465877 EN2P19622 333 aaPredicted RBP15.11■□□□□ 0.01
COL5A1-206ENST00000465877 SLC4A3P48751 1232 aa15.11■□□□□ 0.01
COL5A1-206ENST00000465877 ANTXR2P58335 489 aa15.11■□□□□ 0.01
COL5A1-206ENST00000465877 SART3Q15020 963 aaKnown RBP15.11■□□□□ 0.01
COL5A1-206ENST00000465877 CCDC174Q6PII3 467 aa15.11■□□□□ 0.01
COL5A1-206ENST00000465877 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.11■□□□□ 0.01
COL5A1-206ENST00000465877 HOMER2Q9NSB8 354 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms