RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 CCDC83Q8IWF9 413 aa13.73□□□□□ -0.21
USP54-209ENST00000464635 KIAA1683Q9H0B3 1180 aa13.73□□□□□ -0.21
USP54-209ENST00000464635 PORCNQ9H237 461 aa13.73□□□□□ -0.21
USP54-209ENST00000464635 ZDHHC9Q9Y397 364 aa13.73□□□□□ -0.21
USP54-209ENST00000464635 CEP290O15078 2479 aa13.72□□□□□ -0.21
USP54-209ENST00000464635 A0A1W2PRG0 241 aa13.72□□□□□ -0.21
USP54-209ENST00000464635 ERICH2A1L162 156 aa13.72□□□□□ -0.21
USP54-209ENST00000464635 USP17L12C9JPN9 530 aa13.72□□□□□ -0.21
USP54-209ENST00000464635 USP17L21D6R901 530 aa13.72□□□□□ -0.21
USP54-209ENST00000464635 MPHOSPH10O00566 681 aaKnown RBP13.72□□□□□ -0.21
USP54-209ENST00000464635 SYT1P21579 422 aa13.72□□□□□ -0.21
USP54-209ENST00000464635 GJB2P29033 226 aa13.72□□□□□ -0.21
USP54-209ENST00000464635 ERVK-9P63128 1117 aa13.72□□□□□ -0.21
USP54-209ENST00000464635 ERVK-24P63145 666 aa13.72□□□□□ -0.21
USP54-209ENST00000464635 SCRN1Q12765 414 aa13.72□□□□□ -0.21
USP54-209ENST00000464635 COL9A3Q14050 684 aaPredicted RBP13.72□□□□□ -0.21
USP54-209ENST00000464635 IQCA1Q86XH1 822 aa13.72□□□□□ -0.21
USP54-209ENST00000464635 GPRC5AQ8NFJ5 357 aa13.72□□□□□ -0.21
USP54-209ENST00000464635 NKX2-3Q8TAU0 364 aa13.72□□□□□ -0.21
USP54-209ENST00000464635 ANKS1AQ92625 1134 aa13.72□□□□□ -0.21
USP54-209ENST00000464635 DEFB118Q96PH6 123 aa13.72□□□□□ -0.21
USP54-209ENST00000464635 CABP5Q9NP86 173 aa13.72□□□□□ -0.21
USP54-209ENST00000464635 TCP11L1Q9NUJ3 509 aa13.72□□□□□ -0.21
USP54-209ENST00000464635 CCDC196A0A1B0GTZ2 297 aa13.71□□□□□ -0.21
USP54-209ENST00000464635 B4E1Z4 1266 aa13.71□□□□□ -0.21
USP54-209ENST00000464635 USP17L15C9J2P7 530 aa13.71□□□□□ -0.21
USP54-209ENST00000464635 USP17L13C9JLJ4 530 aa13.71□□□□□ -0.21
USP54-209ENST00000464635 USP17L11C9JVI0 530 aa13.71□□□□□ -0.21
USP54-209ENST00000464635 USP17L18D6R9N7 530 aa13.71□□□□□ -0.21
USP54-209ENST00000464635 USP17L22D6RA61 530 aa13.71□□□□□ -0.21
USP54-209ENST00000464635 USP17L17D6RBQ6 530 aa13.71□□□□□ -0.21
USP54-209ENST00000464635 USP17L19D6RCP7 530 aa13.71□□□□□ -0.21
USP54-209ENST00000464635 USP17L20D6RJB6 530 aa13.71□□□□□ -0.21
USP54-209ENST00000464635 CDKL5O76039 1030 aa13.71□□□□□ -0.21
USP54-209ENST00000464635 FARP2O94887 1054 aaPredicted RBP13.71□□□□□ -0.21
USP54-209ENST00000464635 SGPL1O95470 568 aa13.71□□□□□ -0.21
USP54-209ENST00000464635 HMGCRP04035 888 aa13.71□□□□□ -0.21
USP54-209ENST00000464635 AKR1B1P15121 316 aa13.71□□□□□ -0.21
USP54-209ENST00000464635 CYP2B6P20813 491 aa13.71□□□□□ -0.21
USP54-209ENST00000464635 USP17L24Q0WX57 530 aa13.71□□□□□ -0.21
USP54-209ENST00000464635 KIAA1755Q5JYT7 1200 aa13.71□□□□□ -0.21
USP54-209ENST00000464635 CPLX2Q6PUV4 134 aaKnown RBP13.71□□□□□ -0.21
USP54-209ENST00000464635 TRIB2Q92519 343 aa13.71□□□□□ -0.21
USP54-209ENST00000464635 MAP3K14Q99558 947 aa13.71□□□□□ -0.21
USP54-209ENST00000464635 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.71□□□□□ -0.21
USP54-209ENST00000464635 LY9Q9HBG7 655 aa13.71□□□□□ -0.21
USP54-209ENST00000464635 PAK6Q9NQU5 681 aaPredicted RBP13.71□□□□□ -0.21
USP54-209ENST00000464635 FOXD4L1Q9NU39 408 aa13.71□□□□□ -0.21
USP54-209ENST00000464635 NEDD4P46934 1319 aa13.7□□□□□ -0.22
USP54-209ENST00000464635 H0YGN5 161 aa13.7□□□□□ -0.22
USP54-209ENST00000464635 KDM4AO75164 1064 aa13.7□□□□□ -0.22
USP54-209ENST00000464635 BAG4O95429 457 aaKnown RBP13.7□□□□□ -0.22
USP54-209ENST00000464635 CALM1P0DP23 149 aa13.7□□□□□ -0.22
USP54-209ENST00000464635 CALM2P0DP24 149 aa13.7□□□□□ -0.22
USP54-209ENST00000464635 CALM3P0DP25 149 aa13.7□□□□□ -0.22
USP54-209ENST00000464635 ZSCAN22P10073 491 aaPredicted RBP13.7□□□□□ -0.22
USP54-209ENST00000464635 USP14P54578 494 aa13.7□□□□□ -0.22
USP54-209ENST00000464635 CTDSPL2Q05D32 466 aa13.7□□□□□ -0.22
USP54-209ENST00000464635 APOBRQ0VD83 1088 aa13.7□□□□□ -0.22
USP54-209ENST00000464635 SYNE3Q6ZMZ3 975 aa13.7□□□□□ -0.22
USP54-209ENST00000464635 CATSPERGQ6ZRH7 1159 aa13.7□□□□□ -0.22
USP54-209ENST00000464635 NOL8Q76FK4 1167 aaKnown RBP13.7□□□□□ -0.22
USP54-209ENST00000464635 CYB5R4Q7L1T6 521 aa13.7□□□□□ -0.22
USP54-209ENST00000464635 NSUN7Q8NE18 718 aaKnown RBP13.7□□□□□ -0.22
USP54-209ENST00000464635 TCEANC2Q96MN5 208 aa13.7□□□□□ -0.22
USP54-209ENST00000464635 RPAP3Q9H6T3 665 aaPredicted RBP13.7□□□□□ -0.22
USP54-209ENST00000464635 ZNF236Q9UL36 1845 aa13.69□□□□□ -0.22
USP54-209ENST00000464635 MYH4Q9Y623 1939 aa13.69□□□□□ -0.22
USP54-209ENST00000464635 SPDYE16A6NNV3 312 aaPredicted RBP13.69□□□□□ -0.22
USP54-209ENST00000464635 MINDY4BA8MYZ0 360 aa13.69□□□□□ -0.22
USP54-209ENST00000464635 IFIT3O14879 490 aaKnown RBP13.69□□□□□ -0.22
USP54-209ENST00000464635 SEC23AQ15436 765 aa13.69□□□□□ -0.22
USP54-209ENST00000464635 CCL14Q16627 93 aa13.69□□□□□ -0.22
USP54-209ENST00000464635 TMEM67Q5HYA8 995 aa13.69□□□□□ -0.22
USP54-209ENST00000464635 LARP1BQ659C4 914 aaKnown RBP13.69□□□□□ -0.22
USP54-209ENST00000464635 ATL3Q6DD88 541 aa13.69□□□□□ -0.22
USP54-209ENST00000464635 APOA5Q6Q788 366 aa13.69□□□□□ -0.22
USP54-209ENST00000464635 GPR142Q7Z601 462 aa13.69□□□□□ -0.22
USP54-209ENST00000464635 DGKHQ86XP1 1220 aa13.69□□□□□ -0.22
USP54-209ENST00000464635 SIAH1Q8IUQ4 282 aa13.69□□□□□ -0.22
USP54-209ENST00000464635 NECAB1Q8N987 351 aa13.69□□□□□ -0.22
USP54-209ENST00000464635 USP6NLQ92738 828 aa13.69□□□□□ -0.22
USP54-209ENST00000464635 ZSCAN16Q9H4T2 348 aaPredicted RBP13.69□□□□□ -0.22
USP54-209ENST00000464635 BTBD7Q9P203 1132 aa13.69□□□□□ -0.22
USP54-209ENST00000464635 KLF18A0A0U1RQI7 1052 aa13.68□□□□□ -0.22
USP54-209ENST00000464635 ZBTB43O43298 467 aa13.68□□□□□ -0.22
USP54-209ENST00000464635 MAPK4P31152 587 aa13.68□□□□□ -0.22
USP54-209ENST00000464635 CDK8P49336 464 aa13.68□□□□□ -0.22
USP54-209ENST00000464635 WTAPQ15007 396 aa13.68□□□□□ -0.22
USP54-209ENST00000464635 HABP4Q5JVS0 413 aaKnown RBP13.68□□□□□ -0.22
USP54-209ENST00000464635 PPP4R3BQ5MIZ7 849 aa13.68□□□□□ -0.22
USP54-209ENST00000464635 MORN1Q5T089 497 aa13.68□□□□□ -0.22
USP54-209ENST00000464635 TMEM179Q6ZVK1 233 aa13.68□□□□□ -0.22
USP54-209ENST00000464635 DIS3LQ8TF46 1054 aaKnown RBP13.68□□□□□ -0.22
USP54-209ENST00000464635 GTF3C2Q8WUA4 911 aaPredicted RBP13.68□□□□□ -0.22
USP54-209ENST00000464635 SOCS4Q8WXH5 440 aa13.68□□□□□ -0.22
USP54-209ENST00000464635 ZSCAN10Q96SZ4 725 aaPredicted RBP13.68□□□□□ -0.22
USP54-209ENST00000464635 NUDT12Q9BQG2 462 aa13.68□□□□□ -0.22
USP54-209ENST00000464635 UBAC1Q9BSL1 405 aa13.68□□□□□ -0.22
USP54-209ENST00000464635 LRRC2Q9BYS8 371 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms