RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 ZNF589Q86UQ0 364 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-216ENST00000461872 FBF1Q8TES7 1133 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 PDE11AQ9HCR9 933 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 VWA3AA6NCI4 1184 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 FAM173BQ6P4H8 233 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 FOXR2Q6PJQ5 311 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 IFNL3Q8IZI9 196 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 ARHGAP24Q8N264 748 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 NDUFA10O95299 355 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 ITGA6P23229 1130 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 CTSWP56202 376 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 ZNF662Q6ZS27 426 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 ATRIPQ8WXE1 791 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 CABP5Q9NP86 173 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 LGALS16A8MUM7 142 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 UBE4AQ14139 1066 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 E4F1Q66K89 784 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-216ENST00000461872 NRBP1Q9UHY1 535 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 LRRC37A3O60309 1634 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 ZNF609O15014 1411 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 NAPAP54920 295 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 TSC1Q92574 1164 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 LGR6Q9HBX8 967 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 ZNF532Q9HCE3 1301 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 PPARAQ07869 468 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 RPS6KA1Q15418 735 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 FIGNQ5HY92 759 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 REXO1Q8N1G1 1221 aaKnown RBP7.79□□□□□ -1.16
SYNE1-216ENST00000461872 MAGEB6Q8N7X4 407 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 COG1Q8WTW3 980 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 LIMA1Q9UHB6 759 aaKnown RBP7.79□□□□□ -1.16
SYNE1-216ENST00000461872 USH1CQ9Y6N9 552 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 ARHGAP23Q9P227 1491 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 A0A1W2PQJ5 194 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 MAGEA1P43355 309 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 NEDD9Q14511 834 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 DGKHQ86XP1 1220 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.79□□□□□ -1.16
SYNE1-216ENST00000461872 ADGRG1Q9Y653 693 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 KARSQ15046 597 aaKnown RBP7.79□□□□□ -1.16
SYNE1-216ENST00000461872 CTNNBL1Q8WYA6 563 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-216ENST00000461872 PUF60Q9UHX1 559 aaKnown RBP7.79□□□□□ -1.16
SYNE1-216ENST00000461872 ANXA1P04083 346 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 MAN2A1Q16706 1144 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 FAM204AQ9H8W3 233 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 RPN1P04843 607 aaKnown RBP7.79□□□□□ -1.16
SYNE1-216ENST00000461872 IL6STP40189 918 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-216ENST00000461872 TSNAXIP1Q2TAA8 658 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 BLIDQ8IZY5 108 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 CEP83Q9Y592 693 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 CCNE1P24864 410 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 ZC3H6P61129 1189 aaKnown RBP7.79□□□□□ -1.16
SYNE1-216ENST00000461872 ENOX2Q16206 610 aaKnown RBP7.79□□□□□ -1.16
SYNE1-216ENST00000461872 SYN2Q92777 582 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-216ENST00000461872 ZKSCAN7Q9P0L1 754 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-216ENST00000461872 SALL1Q9NSC2 1324 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 EXOC5O00471 708 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 RNF40O75150 1001 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 KRT13P13646 458 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 NR1H3Q13133 447 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 GGA2Q9UJY4 613 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 LONRF3Q496Y0 759 aa7.79□□□□□ -1.16
SYNE1-216ENST00000461872 EIF3CLB5ME19 914 aaKnown RBP7.78□□□□□ -1.16
SYNE1-216ENST00000461872 EPB41P11171 864 aaKnown RBP7.78□□□□□ -1.16
SYNE1-216ENST00000461872 ATP2A2P16615 1042 aaKnown RBP7.78□□□□□ -1.16
SYNE1-216ENST00000461872 CACNA2D3Q8IZS8 1091 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 EIF3CQ99613 913 aaKnown RBP7.78□□□□□ -1.16
SYNE1-216ENST00000461872 SPZ1Q9BXG8 430 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 NKIRAS1Q9NYS0 192 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 B4E1Z4 1266 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 LARGE1O95461 756 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 PARP1P09874 1014 aaKnown RBP7.78□□□□□ -1.16
SYNE1-216ENST00000461872 CCDC144BQ3MJ40 725 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 CCDC144CPQ8IYA2 1237 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 ZSWIM4Q9H7M6 989 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 PPCSQ9HAB8 311 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 RAB21Q9UL25 225 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 GAS8O95995 478 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 CEP85LQ5SZL2 805 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 SEL1L2Q5TEA6 688 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 MORC4Q8TE76 937 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 SERTAD1Q9UHV2 236 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 CTDP1Q9Y5B0 961 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-216ENST00000461872 RGPD1P0DJD0 1748 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 XRN1Q8IZH2 1706 aaKnown RBP7.78□□□□□ -1.16
SYNE1-216ENST00000461872 UBR1Q8IWV7 1749 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 PVALEFA0A1B0GWK0 134 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 TMC4Q7Z404 712 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 CARD10Q9BWT7 1032 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 MAN1B1Q9UKM7 699 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 PARP3Q9Y6F1 533 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 SMARCA1P28370 1054 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 FKBP3Q00688 224 aaKnown RBP7.78□□□□□ -1.16
SYNE1-216ENST00000461872 RAB3IPQ96QF0 476 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-216ENST00000461872 NOC2LQ9Y3T9 749 aaKnown RBP7.78□□□□□ -1.16
SYNE1-216ENST00000461872 CASP14P31944 242 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 ATP11AP98196 1134 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 ALCAMQ13740 583 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 ARMCX5Q6P1M9 558 aa7.78□□□□□ -1.16
SYNE1-216ENST00000461872 SREK1Q8WXA9 508 aaKnown RBP7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms