RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 TFAP4Q01664 338 aa27.05■■□□□ 1.92
PTPN4-207ENST00000460162 SLC38A10Q9HBR0 1119 aa27.05■■□□□ 1.92
PTPN4-207ENST00000460162 HELLSQ9NRZ9 838 aa27.05■■□□□ 1.92
PTPN4-207ENST00000460162 CTDP1Q9Y5B0 961 aaPredicted RBP27.05■■□□□ 1.92
PTPN4-207ENST00000460162 ZBED4O75132 1171 aa27.04■■□□□ 1.92
PTPN4-207ENST00000460162 OAZ1P54368 228 aa27.04■■□□□ 1.92
PTPN4-207ENST00000460162 FAM47AQ5JRC9 791 aa27.04■■□□□ 1.92
PTPN4-207ENST00000460162 PRAMEF19Q5SWL8 479 aa27.04■■□□□ 1.92
PTPN4-207ENST00000460162 GJC2Q5T442 439 aaPredicted RBP27.04■■□□□ 1.92
PTPN4-207ENST00000460162 ANO1Q5XXA6 986 aa27.04■■□□□ 1.92
PTPN4-207ENST00000460162 DHX30Q7L2E3 1194 aaKnown RBP eCLIP27.04■■□□□ 1.92
PTPN4-207ENST00000460162 MSL3Q8N5Y2 521 aaKnown RBP27.04■■□□□ 1.92
PTPN4-207ENST00000460162 KIFC2Q96AC6 838 aa27.04■■□□□ 1.92
PTPN4-207ENST00000460162 YTHDC1Q96MU7 727 aaKnown RBP27.04■■□□□ 1.92
PTPN4-207ENST00000460162 LTBP2Q14767 1821 aa27.04■■□□□ 1.92
PTPN4-207ENST00000460162 SLFN13Q68D06 897 aa27.03■■□□□ 1.92
PTPN4-207ENST00000460162 ANAPC4Q9UJX5 808 aa27.03■■□□□ 1.92
PTPN4-207ENST00000460162 RIPK3Q9Y572 518 aa27.03■■□□□ 1.92
PTPN4-207ENST00000460162 TSPY2A6NKD2 308 aa27.02■■□□□ 1.92
PTPN4-207ENST00000460162 FDX1P10109 184 aa27.02■■□□□ 1.92
PTPN4-207ENST00000460162 BMP3P12645 472 aa27.02■■□□□ 1.92
PTPN4-207ENST00000460162 ATN1P54259 1190 aaPredicted RBP27.02■■□□□ 1.92
PTPN4-207ENST00000460162 TDHQ8IZJ6 230 aa27.02■■□□□ 1.92
PTPN4-207ENST00000460162 CPXCR1Q8N123 301 aa27.02■■□□□ 1.92
PTPN4-207ENST00000460162 GMCL1Q96IK5 515 aa27.02■■□□□ 1.92
PTPN4-207ENST00000460162 SMCHD1A6NHR9 2005 aa27.01■■□□□ 1.91
PTPN4-207ENST00000460162 SOX1O00570 391 aaPredicted RBP27.01■■□□□ 1.91
PTPN4-207ENST00000460162 RARBP10826 455 aa27.01■■□□□ 1.91
PTPN4-207ENST00000460162 STAT2P52630 851 aa27.01■■□□□ 1.91
PTPN4-207ENST00000460162 VPS53Q5VIR6 699 aa27.01■■□□□ 1.91
PTPN4-207ENST00000460162 FBXO40Q9UH90 709 aa27.01■■□□□ 1.91
PTPN4-207ENST00000460162 CNPY2Q9Y2B0 182 aa27.01■■□□□ 1.91
PTPN4-207ENST00000460162 ZMYM6O95789 1325 aa27■■□□□ 1.91
PTPN4-207ENST00000460162 SYNGAP1Q96PV0 1343 aa27■■□□□ 1.91
PTPN4-207ENST00000460162 DNAJC25-GNG10A0A024R161 153 aa27■■□□□ 1.91
PTPN4-207ENST00000460162 RTP1P59025 263 aa27■■□□□ 1.91
PTPN4-207ENST00000460162 CTDSPL2Q05D32 466 aa27■■□□□ 1.91
PTPN4-207ENST00000460162 LRRC41Q15345 812 aa27■■□□□ 1.91
PTPN4-207ENST00000460162 ALX1Q15699 326 aa27■■□□□ 1.91
PTPN4-207ENST00000460162 SMC5Q8IY18 1101 aa27■■□□□ 1.91
PTPN4-207ENST00000460162 DDX11Q96FC9 970 aa27■■□□□ 1.91
PTPN4-207ENST00000460162 UBE2OQ9C0C9 1292 aaKnown RBP27■■□□□ 1.91
PTPN4-207ENST00000460162 LNPKQ9C0E8 428 aa27■■□□□ 1.91
PTPN4-207ENST00000460162 RAVER2Q9HCJ3 691 aaKnown RBP27■■□□□ 1.91
PTPN4-207ENST00000460162 XPNPEP3Q9NQH7 507 aa27■■□□□ 1.91
PTPN4-207ENST00000460162 STX8Q9UNK0 236 aa27■■□□□ 1.91
PTPN4-207ENST00000460162 A0A0D9SFI3 127 aa26.99■■□□□ 1.91
PTPN4-207ENST00000460162 AKR1A1P14550 325 aa26.99■■□□□ 1.91
PTPN4-207ENST00000460162 SNX17Q15036 470 aa26.99■■□□□ 1.91
PTPN4-207ENST00000460162 ZNF467Q7Z7K2 595 aaPredicted RBP26.99■■□□□ 1.91
PTPN4-207ENST00000460162 FAM160B2Q86V87 743 aa26.99■■□□□ 1.91
PTPN4-207ENST00000460162 CHST13Q8NET6 341 aa26.99■■□□□ 1.91
PTPN4-207ENST00000460162 TMEM232C9JQI7 657 aa26.98■■□□□ 1.91
PTPN4-207ENST00000460162 ORC4O43929 436 aa26.98■■□□□ 1.91
PTPN4-207ENST00000460162 MYCNP04198 464 aaPredicted RBP26.98■■□□□ 1.91
PTPN4-207ENST00000460162 ZNF865P0CJ78 1059 aaPredicted RBP26.98■■□□□ 1.91
PTPN4-207ENST00000460162 SLC1A4P43007 532 aa26.98■■□□□ 1.91
PTPN4-207ENST00000460162 LRIT3Q3SXY7 679 aa26.98■■□□□ 1.91
PTPN4-207ENST00000460162 MCMDC2Q4G0Z9 681 aa26.98■■□□□ 1.91
PTPN4-207ENST00000460162 MAMDC4Q6UXC1 1216 aa26.98■■□□□ 1.91
PTPN4-207ENST00000460162 FAM227BQ96M60 508 aa26.98■■□□□ 1.91
PTPN4-207ENST00000460162 RWDD1Q9H446 243 aaPredicted RBP26.98■■□□□ 1.91
PTPN4-207ENST00000460162 ISY1Q9ULR0 285 aaKnown RBP26.98■■□□□ 1.91
PTPN4-207ENST00000460162 FGRP09769 529 aa26.97■■□□□ 1.91
PTPN4-207ENST00000460162 TAL1P17542 331 aaPredicted RBP26.97■■□□□ 1.91
PTPN4-207ENST00000460162 SLC39A5Q6ZMH5 540 aa26.97■■□□□ 1.91
PTPN4-207ENST00000460162 CHURC1Q8WUH1 139 aa26.97■■□□□ 1.91
PTPN4-207ENST00000460162 LRCH3Q96II8 777 aa26.97■■□□□ 1.91
PTPN4-207ENST00000460162 IL17RBQ9NRM6 502 aa26.97■■□□□ 1.91
PTPN4-207ENST00000460162 PRKAG2Q9UGJ0 569 aa26.97■■□□□ 1.91
PTPN4-207ENST00000460162 MCM3APO60318 1980 aa26.97■■□□□ 1.91
PTPN4-207ENST00000460162 LAMA4Q16363 1823 aa26.96■■□□□ 1.91
PTPN4-207ENST00000460162 RANBP6O60518 1105 aaKnown RBP26.96■■□□□ 1.91
PTPN4-207ENST00000460162 PLA2G6O60733 806 aa26.96■■□□□ 1.91
PTPN4-207ENST00000460162 SLC4A3P48751 1232 aa26.96■■□□□ 1.91
PTPN4-207ENST00000460162 MDM2Q00987 491 aaPredicted RBP26.96■■□□□ 1.91
PTPN4-207ENST00000460162 C1orf53Q5VUE5 145 aa26.96■■□□□ 1.91
PTPN4-207ENST00000460162 RNF180Q86T96 592 aa26.96■■□□□ 1.91
PTPN4-207ENST00000460162 PHF24Q9UPV7 400 aa26.96■■□□□ 1.91
PTPN4-207ENST00000460162 ATP11BQ9Y2G3 1177 aa26.96■■□□□ 1.91
PTPN4-207ENST00000460162 TRIM6-TRIM34B2RNG4 842 aa26.95■■□□□ 1.9
PTPN4-207ENST00000460162 ADCYAP1R1P41586 468 aa26.95■■□□□ 1.9
PTPN4-207ENST00000460162 NOVP48745 357 aa26.95■■□□□ 1.9
PTPN4-207ENST00000460162 IKQ13123 557 aaPredicted RBP26.95■■□□□ 1.9
PTPN4-207ENST00000460162 GPR153Q6NV75 609 aa26.95■■□□□ 1.9
PTPN4-207ENST00000460162 ANKRD35Q8N283 1001 aa26.95■■□□□ 1.9
PTPN4-207ENST00000460162 STAG1Q8WVM7 1258 aa26.95■■□□□ 1.9
PTPN4-207ENST00000460162 LBHD1Q9BQE6 289 aaPredicted RBP26.95■■□□□ 1.9
PTPN4-207ENST00000460162 CCDC171Q6TFL3 1326 aa26.94■■□□□ 1.9
PTPN4-207ENST00000460162 NMT2O60551 498 aa26.94■■□□□ 1.9
PTPN4-207ENST00000460162 MCCP23508 829 aa26.94■■□□□ 1.9
PTPN4-207ENST00000460162 NMIQ13287 307 aaPredicted RBP26.94■■□□□ 1.9
PTPN4-207ENST00000460162 ACAD9Q9H845 621 aa26.94■■□□□ 1.9
PTPN4-207ENST00000460162 INCENPQ9NQS7 918 aa26.94■■□□□ 1.9
PTPN4-207ENST00000460162 TACC3Q9Y6A5 838 aa26.94■■□□□ 1.9
PTPN4-207ENST00000460162 LRRC37A2A6NM11 1700 aa26.93■■□□□ 1.9
PTPN4-207ENST00000460162 SNAI1O95863 264 aaPredicted RBP26.93■■□□□ 1.9
PTPN4-207ENST00000460162 PGK1P00558 417 aa26.93■■□□□ 1.9
PTPN4-207ENST00000460162 FGAP02671 866 aa26.93■■□□□ 1.9
PTPN4-207ENST00000460162 HSPD1P10809 573 aaKnown RBP26.93■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms