RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 URI1O94763 535 aaPredicted RBP9.49□□□□□ -0.89
CD44-208ENST00000428726 BAG3O95817 575 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 IDEP14735 1019 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 RCAN1P53805 252 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 ELF2Q15723 593 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 MRFAP1L1Q96HT8 127 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 CNTNAP4Q9C0A0 1308 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 SMCO2A6NFE2 343 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 POTEMA6NI47 508 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 USP17L15C9J2P7 530 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 USP17L13C9JLJ4 530 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 USP17L11C9JVI0 530 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 USP17L18D6R9N7 530 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 USP17L22D6RA61 530 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 USP17L17D6RBQ6 530 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 USP17L19D6RCP7 530 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 USP17L20D6RJB6 530 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 ACTN4O43707 911 aaKnown RBP9.49□□□□□ -0.89
CD44-208ENST00000428726 PMS1P54277 932 aaKnown RBP9.49□□□□□ -0.89
CD44-208ENST00000428726 EN1Q05925 392 aaPredicted RBP9.49□□□□□ -0.89
CD44-208ENST00000428726 USP17L24Q0WX57 530 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 SLC10A5Q5PT55 438 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 FKBP15Q5T1M5 1219 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 USP17L6PQ6QN14 398 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 BLIDQ8IZY5 108 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 GLIS3Q8NEA6 775 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 TIGD1Q96MW7 591 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 BRIP1Q9BX63 1249 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 RTFDC1Q9BY42 306 aaPredicted RBP9.49□□□□□ -0.89
CD44-208ENST00000428726 RNF26Q9BY78 433 aaPredicted RBP9.49□□□□□ -0.89
CD44-208ENST00000428726 BCAS3Q9H6U6 928 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 BRMS1Q9HCU9 246 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 MAD2L2Q9UI95 211 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 DAGLAQ9Y4D2 1042 aa9.49□□□□□ -0.89
CD44-208ENST00000428726 RAD17O75943 681 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 TDP2O95551 362 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 KLK7P49862 253 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 DNA2P51530 1060 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 RBM6P78332 1123 aaKnown RBP9.48□□□□□ -0.89
CD44-208ENST00000428726 MRPS25P82663 173 aaKnown RBP9.48□□□□□ -0.89
CD44-208ENST00000428726 ERCC6LQ2NKX8 1250 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 MIGA2Q7L4E1 593 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 AMOTL1Q8IY63 956 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 FOXP1Q9H334 677 aaPredicted RBP9.48□□□□□ -0.89
CD44-208ENST00000428726 PLEKHA4Q9H4M7 779 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 CGNQ9P2M7 1197 aaKnown RBP9.48□□□□□ -0.89
CD44-208ENST00000428726 ANAPC4Q9UJX5 808 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.48□□□□□ -0.89
CD44-208ENST00000428726 FLT1P17948 1338 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 PRPF3O43395 683 aaKnown RBP9.48□□□□□ -0.89
CD44-208ENST00000428726 FCER1AP12319 257 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 STAT6P42226 847 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 TPM4P67936 248 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 DGKZQ13574 1117 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 PTPROQ16827 1216 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 AOC3Q16853 763 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 WDR66Q8TBY9 1149 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 PCMTD1Q96MG8 357 aaPredicted RBP9.48□□□□□ -0.89
CD44-208ENST00000428726 BPIFA3Q9BQP9 254 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 TDRD3Q9H7E2 651 aaKnown RBP9.48□□□□□ -0.89
CD44-208ENST00000428726 PKD2L1Q9P0L9 805 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 SRPRBQ9Y5M8 271 aaKnown RBP9.48□□□□□ -0.89
CD44-208ENST00000428726 ECM29Q5VYK3 1845 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 PPEF1O14829 653 aaPredicted RBP9.48□□□□□ -0.89
CD44-208ENST00000428726 SEMA3EO15041 775 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 C21orf2O43822 256 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 MDM2Q00987 491 aaPredicted RBP9.48□□□□□ -0.89
CD44-208ENST00000428726 PPP2R5BQ15173 497 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 DEFB132Q7Z7B7 95 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 POTEDQ86YR6 584 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 NUDT12Q9BQG2 462 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 SH2D3AQ9BRG2 576 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.48□□□□□ -0.895e-38■■■■■ 698.7
CD44-208ENST00000428726 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.48□□□□□ -0.89
CD44-208ENST00000428726 BMP2KQ9NSY1 1161 aaPredicted RBP9.48□□□□□ -0.89
CD44-208ENST00000428726 ATP8A2Q9NTI2 1148 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 BCS1LQ9Y276 419 aa9.48□□□□□ -0.89
CD44-208ENST00000428726 A0A1B0GUL6 1792 aa9.47□□□□□ -0.89
CD44-208ENST00000428726 TCP10L2B9ZVM9 353 aa9.47□□□□□ -0.89
CD44-208ENST00000428726 FANCGO15287 622 aa9.47□□□□□ -0.89
CD44-208ENST00000428726 UBA7P41226 1012 aa9.47□□□□□ -0.89
CD44-208ENST00000428726 PPP1R13BQ96KQ4 1090 aa9.47□□□□□ -0.89
CD44-208ENST00000428726 SLC39A2Q9NP94 309 aa9.47□□□□□ -0.89
CD44-208ENST00000428726 FAM237AA0A1B0GTK4 181 aa9.47□□□□□ -0.89
CD44-208ENST00000428726 USP17L10C9JJH3 530 aa9.47□□□□□ -0.89
CD44-208ENST00000428726 POLRMTO00411 1230 aaKnown RBP9.47□□□□□ -0.89
CD44-208ENST00000428726 NEMFO60524 1076 aa9.47□□□□□ -0.89
CD44-208ENST00000428726 RC3H1Q5TC82 1133 aaKnown RBP9.47□□□□□ -0.89
CD44-208ENST00000428726 DNAAF5Q86Y56 855 aa9.47□□□□□ -0.89
CD44-208ENST00000428726 TBCKQ8TEA7 893 aa9.47□□□□□ -0.89
CD44-208ENST00000428726 RBM17Q96I25 401 aaKnown RBP9.47□□□□□ -0.89
CD44-208ENST00000428726 ARPP21Q9UBL0 812 aaPredicted RBP9.47□□□□□ -0.89
CD44-208ENST00000428726 TRIM10Q9UDY6 481 aa9.47□□□□□ -0.89
CD44-208ENST00000428726 TRPC5Q9UL62 973 aaPredicted RBP9.47□□□□□ -0.89
CD44-208ENST00000428726 PCDHA6Q9UN73 950 aa9.47□□□□□ -0.89
CD44-208ENST00000428726 PCDHA8Q9Y5H6 950 aa9.47□□□□□ -0.89
CD44-208ENST00000428726 SMTNL1A8MU46 457 aa9.46□□□□□ -0.89
CD44-208ENST00000428726 SORBS3O60504 671 aa9.46□□□□□ -0.89
CD44-208ENST00000428726 PARP1P09874 1014 aaKnown RBP9.46□□□□□ -0.89
CD44-208ENST00000428726 PCP11498 1178 aaKnown RBP9.46□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms