RNA–Protein interactions for RNA: ENST00000425436.7

SHOX2-202, Transcript of short stature homeobox 2, humanhuman

TSL 5 BASIC

Gene SHOX2, Length 1,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-202ENST00000425436 BMP3P12645 472 aa18.13■□□□□ 0.49
SHOX2-202ENST00000425436 SLC1A4P43007 532 aa18.13■□□□□ 0.49
SHOX2-202ENST00000425436 IRX3P78415 501 aaPredicted RBP18.13■□□□□ 0.49
SHOX2-202ENST00000425436 L1TD1Q5T7N2 865 aaKnown RBP18.13■□□□□ 0.49
SHOX2-202ENST00000425436 LARP1BQ659C4 914 aaKnown RBP18.13■□□□□ 0.49
SHOX2-202ENST00000425436 NECAB1Q8N987 351 aa18.13■□□□□ 0.49
SHOX2-202ENST00000425436 ZFYVE28Q9HCC9 887 aa18.13■□□□□ 0.49
SHOX2-202ENST00000425436 ZCCHC17Q9NP64 241 aaKnown RBP18.13■□□□□ 0.49
SHOX2-202ENST00000425436 FBXO28Q9NVF7 368 aa18.13■□□□□ 0.49
SHOX2-202ENST00000425436 FRMPD2Q68DX3 1309 aaPredicted RBP18.13■□□□□ 0.49
SHOX2-202ENST00000425436 PEX10O60683 326 aa18.13■□□□□ 0.49
SHOX2-202ENST00000425436 FLOT1O75955 427 aa18.13■□□□□ 0.49
SHOX2-202ENST00000425436 MBD3O95983 291 aa18.13■□□□□ 0.49
SHOX2-202ENST00000425436 PDHBP11177 359 aa18.13■□□□□ 0.49
SHOX2-202ENST00000425436 HMGN5P82970 282 aaKnown RBP18.13■□□□□ 0.49
SHOX2-202ENST00000425436 NFXL1Q6ZNB6 911 aa18.13■□□□□ 0.49
SHOX2-202ENST00000425436 SMCR8Q8TEV9 937 aaPredicted RBP18.13■□□□□ 0.49
SHOX2-202ENST00000425436 GMCL1Q96IK5 515 aa18.13■□□□□ 0.49
SHOX2-202ENST00000425436 PARK7Q99497 189 aaKnown RBP18.13■□□□□ 0.49
SHOX2-202ENST00000425436 GPCPD1Q9NPB8 672 aa18.13■□□□□ 0.49
SHOX2-202ENST00000425436 PNMA3Q9UL41 463 aa18.13■□□□□ 0.49
SHOX2-202ENST00000425436 DHX16O60231 1041 aaKnown RBP18.12■□□□□ 0.49
SHOX2-202ENST00000425436 F13A1P00488 732 aa18.12■□□□□ 0.49
SHOX2-202ENST00000425436 GOLGA8HP0CJ92 632 aa18.12■□□□□ 0.49
SHOX2-202ENST00000425436 HSPA1AP0DMV8 641 aaKnown RBP18.12■□□□□ 0.49
SHOX2-202ENST00000425436 HSPA1BP0DMV9 641 aaKnown RBP18.12■□□□□ 0.49
SHOX2-202ENST00000425436 NCLP19338 710 aaKnown RBP18.12■□□□□ 0.49
SHOX2-202ENST00000425436 HOXD11P31277 338 aaPredicted RBP18.12■□□□□ 0.49
SHOX2-202ENST00000425436 COG2Q14746 738 aa18.12■□□□□ 0.49
SHOX2-202ENST00000425436 CCDC96Q2M329 555 aa18.12■□□□□ 0.49
SHOX2-202ENST00000425436 TTBK2Q6IQ55 1244 aa18.12■□□□□ 0.49
SHOX2-202ENST00000425436 MTA3Q9BTC8 594 aa18.12■□□□□ 0.49
SHOX2-202ENST00000425436 MYL10Q9BUA6 226 aa18.12■□□□□ 0.49
SHOX2-202ENST00000425436 CPA4Q9UI42 421 aa18.12■□□□□ 0.49
SHOX2-202ENST00000425436 CCDC69A6NI79 296 aa18.11■□□□□ 0.49
SHOX2-202ENST00000425436 TMEM232C9JQI7 657 aa18.11■□□□□ 0.49
SHOX2-202ENST00000425436 FOXN1O15353 648 aa18.11■□□□□ 0.49
SHOX2-202ENST00000425436 PRPF40AO75400 957 aaKnown RBP18.11■□□□□ 0.49
SHOX2-202ENST00000425436 HERVK_113P62684 666 aa18.11■□□□□ 0.49
SHOX2-202ENST00000425436 ST3GAL1Q11201 340 aa18.11■□□□□ 0.49
SHOX2-202ENST00000425436 POTEEQ6S8J3 1075 aa18.11■□□□□ 0.49
SHOX2-202ENST00000425436 RAB11FIP4Q86YS3 637 aa18.11■□□□□ 0.49
SHOX2-202ENST00000425436 DCAF4Q8WV16 495 aa18.11■□□□□ 0.49
SHOX2-202ENST00000425436 SAGE1Q9NXZ1 904 aa18.11■□□□□ 0.49
SHOX2-202ENST00000425436 RLFQ13129 1914 aa18.11■□□□□ 0.49
SHOX2-202ENST00000425436 TLR2O60603 784 aa18.1■□□□□ 0.49
SHOX2-202ENST00000425436 ECM2O94769 699 aaPredicted RBP18.1■□□□□ 0.49
SHOX2-202ENST00000425436 SLC16A2P36021 539 aa18.1■□□□□ 0.49
SHOX2-202ENST00000425436 LIFRP42702 1097 aa18.1■□□□□ 0.49
SHOX2-202ENST00000425436 CATIPQ7Z7H3 387 aa18.1■□□□□ 0.49
SHOX2-202ENST00000425436 TMTC2Q8N394 836 aa18.1■□□□□ 0.49
SHOX2-202ENST00000425436 NUP133Q8WUM0 1156 aa18.1■□□□□ 0.49
SHOX2-202ENST00000425436 HOXC10Q9NYD6 342 aa18.1■□□□□ 0.49
SHOX2-202ENST00000425436 MTMR6Q9Y217 621 aa18.1■□□□□ 0.49
SHOX2-202ENST00000425436 PARP14Q460N5 1801 aa18.1■□□□□ 0.49
SHOX2-202ENST00000425436 SPDYE16A6NNV3 312 aaPredicted RBP18.09■□□□□ 0.49
SHOX2-202ENST00000425436 SNHG28P0DPA3 235 aa18.09■□□□□ 0.49
SHOX2-202ENST00000425436 RXRAP19793 462 aa18.09■□□□□ 0.49
SHOX2-202ENST00000425436 DSG3P32926 999 aa18.09■□□□□ 0.49
SHOX2-202ENST00000425436 IKQ13123 557 aaPredicted RBP18.09■□□□□ 0.49
SHOX2-202ENST00000425436 ZNF654Q8IZM8 581 aa18.09■□□□□ 0.49
SHOX2-202ENST00000425436 ANKRD13CQ8N6S4 541 aa18.09■□□□□ 0.49
SHOX2-202ENST00000425436 TMEM87AQ8NBN3 555 aa18.09■□□□□ 0.49
SHOX2-202ENST00000425436 KIFC2Q96AC6 838 aa18.09■□□□□ 0.49
SHOX2-202ENST00000425436 ATG4CQ96DT6 458 aa18.09■□□□□ 0.49
SHOX2-202ENST00000425436 CPVLQ9H3G5 476 aa18.09■□□□□ 0.49
SHOX2-202ENST00000425436 BRPF3Q9ULD4 1205 aa18.09■□□□□ 0.49
SHOX2-202ENST00000425436 ADGRA2Q96PE1 1338 aa18.09■□□□□ 0.49
SHOX2-202ENST00000425436 ZNF543Q08ER8 600 aa18.08■□□□□ 0.49
SHOX2-202ENST00000425436 APOBRQ0VD83 1088 aa18.08■□□□□ 0.49
SHOX2-202ENST00000425436 TROAPQ12815 778 aa18.08■□□□□ 0.49
SHOX2-202ENST00000425436 STK3Q13188 491 aa18.08■□□□□ 0.49
SHOX2-202ENST00000425436 FOXD4L5Q5VV16 416 aaPredicted RBP18.08■□□□□ 0.49
SHOX2-202ENST00000425436 C17orf99Q6UX52 265 aa18.08■□□□□ 0.49
SHOX2-202ENST00000425436 CCDC144CPQ8IYA2 1237 aa18.08■□□□□ 0.49
SHOX2-202ENST00000425436 STAG2Q8N3U4 1231 aa18.08■□□□□ 0.49
SHOX2-202ENST00000425436 FAM184AQ8NB25 1140 aa18.08■□□□□ 0.49
SHOX2-202ENST00000425436 RGS22Q8NE09 1264 aa18.08■□□□□ 0.49
SHOX2-202ENST00000425436 SMARCC2Q8TAQ2 1214 aa18.08■□□□□ 0.49
SHOX2-202ENST00000425436 FOXD4L4Q8WXT5 416 aaPredicted RBP18.08■□□□□ 0.49
SHOX2-202ENST00000425436 SLF1Q9BQI6 1058 aa18.08■□□□□ 0.49
SHOX2-202ENST00000425436 PAGR1Q9BTK6 254 aa18.08■□□□□ 0.49
SHOX2-202ENST00000425436 CFHR5Q9BXR6 569 aa18.08■□□□□ 0.49
SHOX2-202ENST00000425436 UBA5Q9GZZ9 404 aa18.08■□□□□ 0.49
SHOX2-202ENST00000425436 TXNRD2Q9NNW7 524 aa18.08■□□□□ 0.49
SHOX2-202ENST00000425436 RBPJLQ9UBG7 517 aa18.08■□□□□ 0.49
SHOX2-202ENST00000425436 FEM1BQ9UK73 627 aa18.08■□□□□ 0.49
SHOX2-202ENST00000425436 NAP1L2Q9ULW6 460 aaPredicted RBP18.08■□□□□ 0.49
SHOX2-202ENST00000425436 SLC12A7Q9Y666 1083 aa18.08■□□□□ 0.49
SHOX2-202ENST00000425436 GOLGA6L3A6NEY3 463 aa18.08■□□□□ 0.48
SHOX2-202ENST00000425436 PARP1P09874 1014 aaKnown RBP18.08■□□□□ 0.48
SHOX2-202ENST00000425436 PDIA3P30101 505 aaKnown RBP18.08■□□□□ 0.48
SHOX2-202ENST00000425436 STAT2P52630 851 aa18.08■□□□□ 0.48
SHOX2-202ENST00000425436 SNAP25P60880 206 aa18.08■□□□□ 0.48
SHOX2-202ENST00000425436 SCRN1Q12765 414 aa18.08■□□□□ 0.48
SHOX2-202ENST00000425436 SGMS1Q86VZ5 419 aa18.08■□□□□ 0.48
SHOX2-202ENST00000425436 PRPF38AQ8NAV1 312 aaKnown RBP18.08■□□□□ 0.48
SHOX2-202ENST00000425436 PPP1R9AQ9ULJ8 1098 aa18.08■□□□□ 0.48
SHOX2-202ENST00000425436 KLF18A0A0U1RQI7 1052 aa18.07■□□□□ 0.48
SHOX2-202ENST00000425436 GPR25O00155 361 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms