RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 MTMR7Q9Y216 660 aa12.12□□□□□ -0.47
CUX1-205ENST00000425244 TSPY2A6NKD2 308 aa12.12□□□□□ -0.47
CUX1-205ENST00000425244 ADKP55263 362 aaKnown RBP12.12□□□□□ -0.47
CUX1-205ENST00000425244 STRIP1Q5VSL9 837 aa12.12□□□□□ -0.47
CUX1-205ENST00000425244 SMYD4Q8IYR2 804 aaPredicted RBP12.12□□□□□ -0.47
CUX1-205ENST00000425244 SRBD1Q8N5C6 995 aaKnown RBP12.12□□□□□ -0.47
CUX1-205ENST00000425244 TEKT1Q969V4 418 aa12.12□□□□□ -0.47
CUX1-205ENST00000425244 CCDC34Q96HJ3 373 aa12.12□□□□□ -0.47
CUX1-205ENST00000425244 SPON1Q9HCB6 807 aa12.12□□□□□ -0.47
CUX1-205ENST00000425244 GPR75-ASB3A0A0A6YYF3 556 aa12.11□□□□□ -0.47
CUX1-205ENST00000425244 CALM1P0DP23 149 aa12.11□□□□□ -0.47
CUX1-205ENST00000425244 CALM2P0DP24 149 aa12.11□□□□□ -0.47
CUX1-205ENST00000425244 CALM3P0DP25 149 aa12.11□□□□□ -0.47
CUX1-205ENST00000425244 SARSP49591 514 aaKnown RBP12.11□□□□□ -0.47
CUX1-205ENST00000425244 PLCD1P51178 756 aa12.11□□□□□ -0.47
CUX1-205ENST00000425244 NLRP5P59047 1200 aa12.11□□□□□ -0.47
CUX1-205ENST00000425244 TTC38Q5R3I4 469 aa12.11□□□□□ -0.47
CUX1-205ENST00000425244 PIK3AP1Q6ZUJ8 805 aa12.11□□□□□ -0.47
CUX1-205ENST00000425244 SLC44A5Q8NCS7 719 aa12.11□□□□□ -0.47
CUX1-205ENST00000425244 TAOK3Q9H2K8 898 aa12.11□□□□□ -0.47
CUX1-205ENST00000425244 TMX1Q9H3N1 280 aa12.11□□□□□ -0.47
CUX1-205ENST00000425244 USP40Q9NVE5 1235 aa12.11□□□□□ -0.47
CUX1-205ENST00000425244 MYO1BO43795 1136 aa12.11□□□□□ -0.47
CUX1-205ENST00000425244 DDAH1O94760 285 aa12.11□□□□□ -0.47
CUX1-205ENST00000425244 CRKP46108 304 aa12.11□□□□□ -0.47
CUX1-205ENST00000425244 RASSF7Q02833 373 aa12.11□□□□□ -0.47
CUX1-205ENST00000425244 TCP10Q12799 353 aa12.11□□□□□ -0.47
CUX1-205ENST00000425244 NT5DC1Q5TFE4 455 aa12.11□□□□□ -0.47
CUX1-205ENST00000425244 ELOA2Q8IYF1 753 aaPredicted RBP12.11□□□□□ -0.47
CUX1-205ENST00000425244 PLCD3Q8N3E9 789 aa12.11□□□□□ -0.47
CUX1-205ENST00000425244 LRRN4CLQ8ND94 238 aa12.11□□□□□ -0.47
CUX1-205ENST00000425244 ENOX1Q8TC92 643 aaKnown RBP12.11□□□□□ -0.47
CUX1-205ENST00000425244 ZFP91Q96JP5 570 aaPredicted RBP12.11□□□□□ -0.47
CUX1-205ENST00000425244 MED15Q96RN5 788 aa12.11□□□□□ -0.47
CUX1-205ENST00000425244 MAST2Q6P0Q8 1798 aa12.1□□□□□ -0.47
CUX1-205ENST00000425244 ADAMTSL1Q8N6G6 1762 aa12.1□□□□□ -0.47
CUX1-205ENST00000425244 DLEC1Q9Y238 1755 aa12.1□□□□□ -0.47
CUX1-205ENST00000425244 PSMD14O00487 310 aa12.1□□□□□ -0.47
CUX1-205ENST00000425244 CCP110O43303 1012 aa12.1□□□□□ -0.47
CUX1-205ENST00000425244 COBLO75128 1261 aa12.1□□□□□ -0.47
CUX1-205ENST00000425244 VEGFAP15692 232 aaPredicted RBP12.1□□□□□ -0.47
CUX1-205ENST00000425244 ZNF18P17022 549 aa12.1□□□□□ -0.47
CUX1-205ENST00000425244 MCM7P33993 719 aa12.1□□□□□ -0.47
CUX1-205ENST00000425244 KCNJ6P48051 423 aa12.1□□□□□ -0.47
CUX1-205ENST00000425244 RHBDL3P58872 404 aa12.1□□□□□ -0.47
CUX1-205ENST00000425244 PTGDRQ13258 359 aa12.1□□□□□ -0.47
CUX1-205ENST00000425244 SPECC1LQ69YQ0 1117 aa12.1□□□□□ -0.47
CUX1-205ENST00000425244 AMOTL1Q8IY63 956 aa12.1□□□□□ -0.47
CUX1-205ENST00000425244 NIM1KQ8IY84 436 aa12.1□□□□□ -0.47
CUX1-205ENST00000425244 TRIML1Q8N9V2 468 aa12.1□□□□□ -0.47
CUX1-205ENST00000425244 PAGE5Q96GU1 130 aa12.1□□□□□ -0.47
CUX1-205ENST00000425244 PSMD1Q99460 953 aa12.1□□□□□ -0.47
CUX1-205ENST00000425244 BAG1Q99933 345 aaPredicted RBP12.1□□□□□ -0.47
CUX1-205ENST00000425244 CD2APQ9Y5K6 639 aa12.1□□□□□ -0.47
CUX1-205ENST00000425244 CNTNAP5Q8WYK1 1306 aa12.1□□□□□ -0.47
CUX1-205ENST00000425244 SNED1Q8TER0 1413 aa12.1□□□□□ -0.47
CUX1-205ENST00000425244 SLFN14P0C7P3 912 aa12.1□□□□□ -0.47
CUX1-205ENST00000425244 PPP4CP60510 307 aa12.1□□□□□ -0.47
CUX1-205ENST00000425244 ETF1P62495 437 aaKnown RBP12.1□□□□□ -0.47
CUX1-205ENST00000425244 ARPP21Q9UBL0 812 aaPredicted RBP12.1□□□□□ -0.47
CUX1-205ENST00000425244 KMT5BQ4FZB7 885 aa12.09□□□□□ -0.47
CUX1-205ENST00000425244 JDP2Q8WYK2 163 aa12.09□□□□□ -0.47
CUX1-205ENST00000425244 FHDC1Q9C0D6 1143 aaPredicted RBP12.09□□□□□ -0.47
CUX1-205ENST00000425244 BLZF1Q9H2G9 400 aa12.09□□□□□ -0.47
CUX1-205ENST00000425244 MKNK2Q9HBH9 465 aa12.09□□□□□ -0.47
CUX1-205ENST00000425244 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.09□□□□□ -0.473e-7■■■□□ 17.9
CUX1-205ENST00000425244 FLT1P17948 1338 aa12.09□□□□□ -0.47
CUX1-205ENST00000425244 URI1O94763 535 aaPredicted RBP12.09□□□□□ -0.47
CUX1-205ENST00000425244 SLURP2P0DP57 97 aa12.09□□□□□ -0.47
CUX1-205ENST00000425244 SCG2P13521 617 aa12.09□□□□□ -0.47
CUX1-205ENST00000425244 CD44P16070 742 aaKnown RBP12.09□□□□□ -0.47
CUX1-205ENST00000425244 NFIAQ12857 509 aa12.09□□□□□ -0.47
CUX1-205ENST00000425244 ERCC6LQ2NKX8 1250 aa12.09□□□□□ -0.47
CUX1-205ENST00000425244 ZNF397Q8NF99 534 aaPredicted RBP12.09□□□□□ -0.47
CUX1-205ENST00000425244 FERMT2Q96AC1 680 aa12.09□□□□□ -0.47
CUX1-205ENST00000425244 GAKO14976 1311 aa12.09□□□□□ -0.47
CUX1-205ENST00000425244 SYNRGQ9UMZ2 1314 aa12.09□□□□□ -0.47
CUX1-205ENST00000425244 MYH6P13533 1939 aa12.09□□□□□ -0.47
CUX1-205ENST00000425244 COL4A5P29400 1685 aa12.09□□□□□ -0.47
CUX1-205ENST00000425244 KIF13BQ9NQT8 1826 aa12.09□□□□□ -0.47
CUX1-205ENST00000425244 NFKBIEO00221 500 aa12.08□□□□□ -0.48
CUX1-205ENST00000425244 ADAMTS3O15072 1205 aa12.08□□□□□ -0.48
CUX1-205ENST00000425244 ARHGAP6O43182 974 aa12.08□□□□□ -0.48
CUX1-205ENST00000425244 ZSCAN12O43309 604 aa12.08□□□□□ -0.48
CUX1-205ENST00000425244 ORC4O43929 436 aa12.08□□□□□ -0.48
CUX1-205ENST00000425244 PCP11498 1178 aaKnown RBP12.08□□□□□ -0.48
CUX1-205ENST00000425244 PLCG2P16885 1265 aa12.08□□□□□ -0.48
CUX1-205ENST00000425244 NPY5RQ15761 445 aa12.08□□□□□ -0.48
CUX1-205ENST00000425244 SOGA3Q5TF21 947 aa12.08□□□□□ -0.48
CUX1-205ENST00000425244 APOBEC3HQ6NTF7 200 aaKnown RBP12.08□□□□□ -0.48
CUX1-205ENST00000425244 CDC42EP5Q6NZY7 148 aa12.08□□□□□ -0.48
CUX1-205ENST00000425244 FBXO38Q6PIJ6 1188 aa12.08□□□□□ -0.48
CUX1-205ENST00000425244 CREBRFQ8IUR6 639 aa12.08□□□□□ -0.48
CUX1-205ENST00000425244 CPLX3Q8WVH0 158 aa12.08□□□□□ -0.48
CUX1-205ENST00000425244 GPKOWQ92917 476 aaPredicted RBP eCLIP12.08□□□□□ -0.487e-6■□□□□ 10
CUX1-205ENST00000425244 DESI2Q9BSY9 194 aa12.08□□□□□ -0.48
CUX1-205ENST00000425244 DDX4Q9NQI0 724 aaKnown RBP12.08□□□□□ -0.48
CUX1-205ENST00000425244 PPP2R2CQ9Y2T4 447 aa12.08□□□□□ -0.48
CUX1-205ENST00000425244 BMP15O95972 392 aa12.08□□□□□ -0.48
CUX1-205ENST00000425244 FGRP09769 529 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms