RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 RGS19P49795 217 aa24.4■■□□□ 1.5
VSX1-204ENST00000409958 MAP2K5Q13163 448 aa24.4■■□□□ 1.5
VSX1-204ENST00000409958 GRB14Q14449 540 aa24.4■■□□□ 1.5
VSX1-204ENST00000409958 KCTD1Q719H9 257 aa24.4■■□□□ 1.5
VSX1-204ENST00000409958 NCAPG2Q86XI2 1143 aa24.4■■□□□ 1.5
VSX1-204ENST00000409958 RIOX2Q8IUF8 465 aa24.4■■□□□ 1.5
VSX1-204ENST00000409958 TMEM106CQ9BVX2 250 aa24.4■■□□□ 1.5
VSX1-204ENST00000409958 SLC38A10Q9HBR0 1119 aa24.4■■□□□ 1.5
VSX1-204ENST00000409958 MTMR7Q9Y216 660 aa24.4■■□□□ 1.5
VSX1-204ENST00000409958 E7EWF7 191 aa24.39■■□□□ 1.5
VSX1-204ENST00000409958 ATP2A1O14983 1001 aa24.39■■□□□ 1.5
VSX1-204ENST00000409958 RASGRP2Q7LDG7 609 aa24.39■■□□□ 1.5
VSX1-204ENST00000409958 CHMP4CQ96CF2 233 aa24.39■■□□□ 1.5
VSX1-204ENST00000409958 UBAC1Q9BSL1 405 aa24.39■■□□□ 1.5
VSX1-204ENST00000409958 TEX13BQ9BXU2 312 aa24.39■■□□□ 1.5
VSX1-204ENST00000409958 CTDP1Q9Y5B0 961 aaPredicted RBP24.39■■□□□ 1.5
VSX1-204ENST00000409958 INHAP05111 366 aa24.38■■□□□ 1.49
VSX1-204ENST00000409958 PDHBP11177 359 aa24.38■■□□□ 1.49
VSX1-204ENST00000409958 IKQ13123 557 aaPredicted RBP24.38■■□□□ 1.49
VSX1-204ENST00000409958 CCDC96Q2M329 555 aa24.38■■□□□ 1.49
VSX1-204ENST00000409958 TRMT44Q8IYL2 757 aaKnown RBP24.38■■□□□ 1.49
VSX1-204ENST00000409958 ENAHQ8N8S7 591 aaPredicted RBP24.38■■□□□ 1.49
VSX1-204ENST00000409958 NCOA7Q8NI08 942 aa24.38■■□□□ 1.49
VSX1-204ENST00000409958 APBA2Q99767 749 aa24.38■■□□□ 1.49
VSX1-204ENST00000409958 TAF6LQ9Y6J9 622 aa24.38■■□□□ 1.49
VSX1-204ENST00000409958 TNKSO95271 1327 aa24.38■■□□□ 1.49
VSX1-204ENST00000409958 POTEFA5A3E0 1075 aa24.37■■□□□ 1.49
VSX1-204ENST00000409958 HMGCRP04035 888 aa24.37■■□□□ 1.49
VSX1-204ENST00000409958 SNHG28P0DPA3 235 aa24.37■■□□□ 1.49
VSX1-204ENST00000409958 OAZ1P54368 228 aa24.37■■□□□ 1.49
VSX1-204ENST00000409958 MTFR1Q15390 333 aa24.37■■□□□ 1.49
VSX1-204ENST00000409958 STOX1Q6ZVD7 989 aa24.37■■□□□ 1.49
VSX1-204ENST00000409958 CYB5R4Q7L1T6 521 aa24.37■■□□□ 1.49
VSX1-204ENST00000409958 RALYLQ86SE5 291 aaKnown RBP24.37■■□□□ 1.49
VSX1-204ENST00000409958 ABRAQ8N0Z2 381 aa24.37■■□□□ 1.49
VSX1-204ENST00000409958 HOXC6P09630 235 aa24.36■■□□□ 1.49
VSX1-204ENST00000409958 MLLT1Q03111 559 aaPredicted RBP24.36■■□□□ 1.49
VSX1-204ENST00000409958 NECTIN1Q15223 517 aa24.36■■□□□ 1.49
VSX1-204ENST00000409958 SNRNP48Q6IEG0 339 aaKnown RBP24.36■■□□□ 1.49
VSX1-204ENST00000409958 BTNL9Q6UXG8 535 aa24.36■■□□□ 1.49
VSX1-204ENST00000409958 PNMA1Q8ND90 353 aa24.36■■□□□ 1.49
VSX1-204ENST00000409958 TRIB2Q92519 343 aa24.36■■□□□ 1.49
VSX1-204ENST00000409958 KAT14Q9H8E8 782 aa24.36■■□□□ 1.49
VSX1-204ENST00000409958 FCER1AP12319 257 aa24.35■■□□□ 1.49
VSX1-204ENST00000409958 CCL5P13501 91 aa24.35■■□□□ 1.49
VSX1-204ENST00000409958 ADORA2AP29274 412 aa24.35■■□□□ 1.49
VSX1-204ENST00000409958 CPXCR1Q8N123 301 aa24.35■■□□□ 1.49
VSX1-204ENST00000409958 PRR12Q9ULL5 1215 aa24.35■■□□□ 1.49
VSX1-204ENST00000409958 RBBP6Q7Z6E9 1792 aaKnown RBP24.35■■□□□ 1.49
VSX1-204ENST00000409958 ZNF236Q9UL36 1845 aa24.35■■□□□ 1.49
VSX1-204ENST00000409958 SLC27A2O14975 620 aa24.35■■□□□ 1.49
VSX1-204ENST00000409958 ZKSCAN1P17029 563 aaPredicted RBP24.35■■□□□ 1.49
VSX1-204ENST00000409958 ZNF543Q08ER8 600 aa24.35■■□□□ 1.49
VSX1-204ENST00000409958 SEC23AQ15436 765 aa24.35■■□□□ 1.49
VSX1-204ENST00000409958 CREB3L3Q68CJ9 461 aa24.35■■□□□ 1.49
VSX1-204ENST00000409958 RAVER2Q9HCJ3 691 aaKnown RBP24.35■■□□□ 1.49
VSX1-204ENST00000409958 FRMPD2Q68DX3 1309 aaPredicted RBP24.34■■□□□ 1.49
VSX1-204ENST00000409958 GPATCH4Q5T3I0 446 aaKnown RBP24.34■■□□□ 1.49
VSX1-204ENST00000409958 IFIT1BQ5T764 474 aaKnown RBP24.34■■□□□ 1.49
VSX1-204ENST00000409958 TTBK2Q6IQ55 1244 aa24.34■■□□□ 1.49
VSX1-204ENST00000409958 DPP9Q86TI2 863 aa24.34■■□□□ 1.49
VSX1-204ENST00000409958 RNF208Q9H0X6 261 aa24.34■■□□□ 1.49
VSX1-204ENST00000409958 GPCPD1Q9NPB8 672 aa24.34■■□□□ 1.49
VSX1-204ENST00000409958 CCL14Q16627 93 aa24.33■■□□□ 1.48
VSX1-204ENST00000409958 SYDE2Q5VT97 1194 aa24.33■■□□□ 1.48
VSX1-204ENST00000409958 MB21D2Q8IYB1 491 aaPredicted RBP24.33■■□□□ 1.48
VSX1-204ENST00000409958 NPLOC4Q8TAT6 608 aa24.33■■□□□ 1.48
VSX1-204ENST00000409958 MMP19Q99542 508 aa24.33■■□□□ 1.48
VSX1-204ENST00000409958 UNC93B1Q9H1C4 597 aa24.33■■□□□ 1.48
VSX1-204ENST00000409958 SLC5A4Q9NY91 659 aa24.33■■□□□ 1.48
VSX1-204ENST00000409958 RIPK3Q9Y572 518 aa24.33■■□□□ 1.48
VSX1-204ENST00000409958 BRCA2P51587 3418 aa24.32■■□□□ 1.48
VSX1-204ENST00000409958 GJB1P08034 283 aa24.32■■□□□ 1.48
VSX1-204ENST00000409958 SLC16A2P36021 539 aa24.32■■□□□ 1.48
VSX1-204ENST00000409958 KCTD2Q14681 263 aa24.32■■□□□ 1.48
VSX1-204ENST00000409958 SART3Q15020 963 aaKnown RBP24.32■■□□□ 1.48
VSX1-204ENST00000409958 RNF20Q5VTR2 975 aa24.32■■□□□ 1.48
VSX1-204ENST00000409958 ZNF536O15090 1300 aa24.32■■□□□ 1.48
VSX1-204ENST00000409958 ERICH2A1L162 156 aa24.31■■□□□ 1.48
VSX1-204ENST00000409958 IFIT3O14879 490 aaKnown RBP24.31■■□□□ 1.48
VSX1-204ENST00000409958 COBLO75128 1261 aa24.31■■□□□ 1.48
VSX1-204ENST00000409958 TRIM32Q13049 653 aa24.31■■□□□ 1.48
VSX1-204ENST00000409958 MAP3K21Q5TCX8 1036 aa24.31■■□□□ 1.48
VSX1-204ENST00000409958 DHX30Q7L2E3 1194 aaKnown RBP eCLIP24.31■■□□□ 1.48
VSX1-204ENST00000409958 CHST13Q8NET6 341 aa24.31■■□□□ 1.48
VSX1-204ENST00000409958 RANBP17Q9H2T7 1088 aaKnown RBP24.31■■□□□ 1.48
VSX1-204ENST00000409958 FBXO40Q9UH90 709 aa24.31■■□□□ 1.48
VSX1-204ENST00000409958 EN2P19622 333 aaPredicted RBP24.3■■□□□ 1.48
VSX1-204ENST00000409958 SLC4A3P48751 1232 aa24.3■■□□□ 1.48
VSX1-204ENST00000409958 ANTXR2P58335 489 aa24.3■■□□□ 1.48
VSX1-204ENST00000409958 MTA3Q9BTC8 594 aa24.3■■□□□ 1.48
VSX1-204ENST00000409958 PAK6Q9NQU5 681 aaPredicted RBP24.3■■□□□ 1.48
VSX1-204ENST00000409958 FLRT1Q9NZU1 646 aa24.3■■□□□ 1.48
VSX1-204ENST00000409958 RPTORQ8N122 1335 aa24.3■■□□□ 1.48
VSX1-204ENST00000409958 PRKAR2AP13861 404 aaKnown RBP24.29■■□□□ 1.48
VSX1-204ENST00000409958 GJA8P48165 433 aa24.29■■□□□ 1.48
VSX1-204ENST00000409958 WTAPQ15007 396 aa24.29■■□□□ 1.48
VSX1-204ENST00000409958 TKFCQ3LXA3 575 aa24.29■■□□□ 1.48
VSX1-204ENST00000409958 ASPRV1Q53RT3 343 aa24.29■■□□□ 1.48
VSX1-204ENST00000409958 MFSD14CQ5VZR4 134 aa24.29■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms