RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 INTS13Q9NVM9 706 aa12.59□□□□□ -0.39
CUX1-204ENST00000393824 DNAJC21Q5F1R6 531 aaKnown RBP12.58□□□□□ -0.4
CUX1-204ENST00000393824 IFNL3Q8IZI9 196 aa12.58□□□□□ -0.4
CUX1-204ENST00000393824 CNNM3Q8NE01 707 aa12.58□□□□□ -0.4
CUX1-204ENST00000393824 LRRC2Q9BYS8 371 aa12.58□□□□□ -0.4
CUX1-204ENST00000393824 DAGLAQ9Y4D2 1042 aa12.58□□□□□ -0.4
CUX1-204ENST00000393824 MROH7-TTC4A0A0A0MT08 1334 aa12.57□□□□□ -0.4
CUX1-204ENST00000393824 USP17L3A6NCW0 530 aa12.57□□□□□ -0.4
CUX1-204ENST00000393824 USP17L4A6NCW7 530 aa12.57□□□□□ -0.4
CUX1-204ENST00000393824 FDPSP14324 419 aaKnown RBP12.57□□□□□ -0.4
CUX1-204ENST00000393824 PFKFB1P16118 471 aa12.57□□□□□ -0.4
CUX1-204ENST00000393824 BTDP43251 543 aa12.57□□□□□ -0.4
CUX1-204ENST00000393824 GUCY1B3Q02153 619 aa12.57□□□□□ -0.4
CUX1-204ENST00000393824 CXCL9Q07325 125 aa12.57□□□□□ -0.4
CUX1-204ENST00000393824 USP17L1Q7RTZ2 530 aa12.57□□□□□ -0.4
CUX1-204ENST00000393824 EGFL6Q8IUX8 553 aa12.57□□□□□ -0.4
CUX1-204ENST00000393824 TBC1D10CQ8IV04 446 aa12.57□□□□□ -0.4
CUX1-204ENST00000393824 SUPT20HQ8NEM7 779 aa12.57□□□□□ -0.4
CUX1-204ENST00000393824 ACBD3Q9H3P7 528 aa12.57□□□□□ -0.4
CUX1-204ENST00000393824 WDHD1O75717 1129 aaPredicted RBP12.57□□□□□ -0.4
CUX1-204ENST00000393824 RHBDL3P58872 404 aa12.57□□□□□ -0.4
CUX1-204ENST00000393824 CCT2P78371 535 aaKnown RBP12.57□□□□□ -0.4
CUX1-204ENST00000393824 SPTY2D1Q68D10 685 aaPredicted RBP12.57□□□□□ -0.4
CUX1-204ENST00000393824 TBC1D22AQ8WUA7 517 aa12.57□□□□□ -0.4
CUX1-204ENST00000393824 VIPAS39Q9H9C1 493 aa12.57□□□□□ -0.4
CUX1-204ENST00000393824 FANCLQ9NW38 375 aa12.57□□□□□ -0.4
CUX1-204ENST00000393824 CCDC175P0C221 793 aa12.56□□□□□ -0.4
CUX1-204ENST00000393824 SOGA3Q5TF21 947 aa12.56□□□□□ -0.4
CUX1-204ENST00000393824 MYSM1Q5VVJ2 828 aa12.56□□□□□ -0.4
CUX1-204ENST00000393824 SPECC1LQ69YQ0 1117 aa12.56□□□□□ -0.4
CUX1-204ENST00000393824 CHST3Q7LGC8 479 aa12.56□□□□□ -0.4
CUX1-204ENST00000393824 GPATCH11Q8N954 259 aa12.56□□□□□ -0.4
CUX1-204ENST00000393824 C8orf76Q96K31 380 aa12.56□□□□□ -0.4
CUX1-204ENST00000393824 LAMA4Q16363 1823 aa12.56□□□□□ -0.4
CUX1-204ENST00000393824 MYH2Q9UKX2 1941 aa12.56□□□□□ -0.4
CUX1-204ENST00000393824 GAKO14976 1311 aa12.56□□□□□ -0.4
CUX1-204ENST00000393824 WDR19Q8NEZ3 1342 aa12.56□□□□□ -0.4
CUX1-204ENST00000393824 FAM237AA0A1B0GTK4 181 aa12.56□□□□□ -0.4
CUX1-204ENST00000393824 SLURP2P0DP57 97 aa12.56□□□□□ -0.4
CUX1-204ENST00000393824 CYP2D6P10635 497 aa12.56□□□□□ -0.4
CUX1-204ENST00000393824 CACNB3P54284 484 aa12.56□□□□□ -0.4
CUX1-204ENST00000393824 SATB1Q01826 763 aa12.56□□□□□ -0.4
CUX1-204ENST00000393824 CTDSPL2Q05D32 466 aa12.56□□□□□ -0.4
CUX1-204ENST00000393824 SART3Q15020 963 aaKnown RBP12.56□□□□□ -0.4
CUX1-204ENST00000393824 APOBEC3HQ6NTF7 200 aaKnown RBP12.56□□□□□ -0.4
CUX1-204ENST00000393824 SYNE3Q6ZMZ3 975 aa12.56□□□□□ -0.4
CUX1-204ENST00000393824 ARHGAP27Q6ZUM4 889 aa12.56□□□□□ -0.4
CUX1-204ENST00000393824 ELOA2Q8IYF1 753 aaPredicted RBP12.56□□□□□ -0.4
CUX1-204ENST00000393824 ZSWIM4Q9H7M6 989 aa12.56□□□□□ -0.4
CUX1-204ENST00000393824 FAM204AQ9H8W3 233 aa12.56□□□□□ -0.4
CUX1-204ENST00000393824 MRPL44Q9H9J2 332 aaKnown RBP12.56□□□□□ -0.4
CUX1-204ENST00000393824 SUGCTQ9HAC7 445 aa12.56□□□□□ -0.4
CUX1-204ENST00000393824 DCP1AQ9NPI6 582 aaPredicted RBP12.56□□□□□ -0.4
CUX1-204ENST00000393824 ZNRF3Q9ULT6 936 aa12.56□□□□□ -0.4
CUX1-204ENST00000393824 HPSEQ9Y251 543 aa12.56□□□□□ -0.4
CUX1-204ENST00000393824 GPR75-ASB3A0A0A6YYF3 556 aa12.55□□□□□ -0.4
CUX1-204ENST00000393824 EGFRP00533 1210 aa12.55□□□□□ -0.4
CUX1-204ENST00000393824 AARSP49588 968 aaKnown RBP eCLIP12.55□□□□□ -0.42e-6■■■■■ 51.2
CUX1-204ENST00000393824 ISM2Q6H9L7 571 aa12.55□□□□□ -0.4
CUX1-204ENST00000393824 CCDC102AQ96A19 550 aa12.55□□□□□ -0.4
CUX1-204ENST00000393824 GMLQ99445 158 aa12.55□□□□□ -0.4
CUX1-204ENST00000393824 NCOA5Q9HCD5 579 aaKnown RBP12.55□□□□□ -0.4
CUX1-204ENST00000393824 DONSONQ9NYP3 566 aa12.55□□□□□ -0.4
CUX1-204ENST00000393824 PUF60Q9UHX1 559 aaKnown RBP12.55□□□□□ -0.4
CUX1-204ENST00000393824 MAST2Q6P0Q8 1798 aa12.55□□□□□ -0.4
CUX1-204ENST00000393824 CCDC88AQ3V6T2 1871 aa12.55□□□□□ -0.4
CUX1-204ENST00000393824 USP17L8P0C7I0 530 aa12.55□□□□□ -0.4
CUX1-204ENST00000393824 SYKP43405 635 aa12.55□□□□□ -0.4
CUX1-204ENST00000393824 VSNL1P62760 191 aa12.55□□□□□ -0.4
CUX1-204ENST00000393824 ANO1Q5XXA6 986 aa12.55□□□□□ -0.4
CUX1-204ENST00000393824 WDR93Q6P2C0 686 aa12.55□□□□□ -0.4
CUX1-204ENST00000393824 NIM1KQ8IY84 436 aa12.55□□□□□ -0.4
CUX1-204ENST00000393824 JMYQ8N9B5 988 aa12.55□□□□□ -0.4
CUX1-204ENST00000393824 TGFBRAP1Q8WUH2 860 aa12.55□□□□□ -0.4
CUX1-204ENST00000393824 IRX2Q9BZI1 471 aaPredicted RBP12.55□□□□□ -0.4
CUX1-204ENST00000393824 GPHNQ9NQX3 736 aaPredicted RBP12.55□□□□□ -0.4
CUX1-204ENST00000393824 BAZ2AQ9UIF9 1905 aaKnown RBP12.55□□□□□ -0.4
CUX1-204ENST00000393824 PPP6R2O75170 966 aa12.54□□□□□ -0.4
CUX1-204ENST00000393824 VIL1P09327 827 aaKnown RBP12.54□□□□□ -0.4
CUX1-204ENST00000393824 ADKP55263 362 aaKnown RBP12.54□□□□□ -0.4
CUX1-204ENST00000393824 NFIAQ12857 509 aa12.54□□□□□ -0.4
CUX1-204ENST00000393824 SLC39A14Q15043 492 aa12.54□□□□□ -0.4
CUX1-204ENST00000393824 KARSQ15046 597 aaKnown RBP12.54□□□□□ -0.4
CUX1-204ENST00000393824 E2F4Q16254 413 aa12.54□□□□□ -0.4
CUX1-204ENST00000393824 RPAINQ86UA6 219 aa12.54□□□□□ -0.4
CUX1-204ENST00000393824 PDILTQ8N807 584 aa12.54□□□□□ -0.4
CUX1-204ENST00000393824 CTCFLQ8NI51 663 aaPredicted RBP12.54□□□□□ -0.4
CUX1-204ENST00000393824 FAM163AQ96GL9 167 aaPredicted RBP12.54□□□□□ -0.4
CUX1-204ENST00000393824 NAPBQ9H115 298 aa12.54□□□□□ -0.4
CUX1-204ENST00000393824 CXorf56Q9H5V9 222 aa12.54□□□□□ -0.4
CUX1-204ENST00000393824 DDX4Q9NQI0 724 aaKnown RBP12.54□□□□□ -0.4
CUX1-204ENST00000393824 ARFGEF1Q9Y6D6 1849 aa12.54□□□□□ -0.4
CUX1-204ENST00000393824 ZNF541Q9H0D2 1346 aa12.54□□□□□ -0.4
CUX1-204ENST00000393824 USP17L12C9JPN9 530 aa12.54□□□□□ -0.4
CUX1-204ENST00000393824 USP17L21D6R901 530 aa12.54□□□□□ -0.4
CUX1-204ENST00000393824 KIF5CO60282 957 aa12.54□□□□□ -0.4
CUX1-204ENST00000393824 PRPF6O94906 941 aaKnown RBP12.54□□□□□ -0.4
CUX1-204ENST00000393824 POLR3DP05423 398 aaPredicted RBP12.54□□□□□ -0.4
CUX1-204ENST00000393824 ZNF18P17022 549 aa12.54□□□□□ -0.4
CUX1-204ENST00000393824 CRKP46108 304 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms