RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 TAOK2Q9UL54 1235 aa16.39■□□□□ 0.22
VPS9D1-201ENST00000389386 AFF2P51816 1311 aa16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 C4AP0C0L4 1744 aa16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 C4BP0C0L5 1744 aa16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 LAMB4A4D0S4 1761 aa16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 A0A1B0GUA9 196 aa16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 LRRC10BA6NIK2 292 aa16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 M0R2C6 588 aa16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 CLNS1AP54105 237 aaKnown RBP16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 IFT88Q13099 833 aa16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 KRT31Q15323 416 aa16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 HLFQ16534 295 aa16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 CCDC70Q6NSX1 233 aa16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 AIDAQ96BJ3 306 aa16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 CCT8L2Q96SF2 557 aa16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 N4BP3O15049 544 aa16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 RNF113AO15541 343 aaKnown RBP16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 INHBEP58166 350 aa16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 TBC1D8BQ0IIM8 1120 aa16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 NNTQ13423 1086 aa16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 BIRC2Q13490 618 aa16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 TRIM14Q14142 442 aa16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 VPS72Q15906 364 aa16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 PTGISQ16647 500 aa16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 TNS2Q63HR2 1409 aa16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 IQCEQ6IPM2 695 aa16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 RUBCNQ92622 972 aa16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 SLC4A9Q96Q91 983 aa16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 LIMA1Q9UHB6 759 aaKnown RBP16.39■□□□□ 0.21
VPS9D1-201ENST00000389386 PPP1R3GB7ZBB8 358 aa16.38■□□□□ 0.21
VPS9D1-201ENST00000389386 HSF2BPO75031 334 aa16.38■□□□□ 0.21
VPS9D1-201ENST00000389386 TOB1P50616 345 aaPredicted RBP16.38■□□□□ 0.21
VPS9D1-201ENST00000389386 GUCY1A3Q02108 690 aa16.38■□□□□ 0.21
VPS9D1-201ENST00000389386 GRIK3Q13003 919 aa16.38■□□□□ 0.21
VPS9D1-201ENST00000389386 CCDC50Q8IVM0 306 aa16.38■□□□□ 0.21
VPS9D1-201ENST00000389386 RUFY1Q96T51 708 aa16.38■□□□□ 0.21
VPS9D1-201ENST00000389386 LRRC1Q9BTT6 524 aa16.38■□□□□ 0.21
VPS9D1-201ENST00000389386 ITGB4P16144 1822 aa16.38■□□□□ 0.21
VPS9D1-201ENST00000389386 FOXP2O15409 715 aa16.38■□□□□ 0.21
VPS9D1-201ENST00000389386 IMMTQ16891 758 aaKnown RBP16.38■□□□□ 0.21
VPS9D1-201ENST00000389386 KCTD16Q68DU8 428 aa16.38■□□□□ 0.21
VPS9D1-201ENST00000389386 CYB5D1Q6P9G0 228 aa16.38■□□□□ 0.21
VPS9D1-201ENST00000389386 EMBQ6PCB8 327 aa16.38■□□□□ 0.21
VPS9D1-201ENST00000389386 ZNF662Q6ZS27 426 aa16.38■□□□□ 0.21
VPS9D1-201ENST00000389386 PTF1AQ7RTS3 328 aa16.38■□□□□ 0.21
VPS9D1-201ENST00000389386 NLRP14Q86W24 1093 aa16.38■□□□□ 0.21
VPS9D1-201ENST00000389386 MYCBPAPQ8TBZ2 947 aa16.38■□□□□ 0.21
VPS9D1-201ENST00000389386 PHKBQ93100 1093 aa16.38■□□□□ 0.21
VPS9D1-201ENST00000389386 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.38■□□□□ 0.21
VPS9D1-201ENST00000389386 SH2B2O14492 632 aaPredicted RBP16.37■□□□□ 0.21
VPS9D1-201ENST00000389386 PPP1R37O75864 691 aa16.37■□□□□ 0.21
VPS9D1-201ENST00000389386 EZRP15311 586 aaKnown RBP16.37■□□□□ 0.21
VPS9D1-201ENST00000389386 HDLBPQ00341 1268 aaKnown RBP16.37■□□□□ 0.21
VPS9D1-201ENST00000389386 USP49Q70CQ1 688 aa16.37■□□□□ 0.21
VPS9D1-201ENST00000389386 FUKQ8N0W3 1084 aa16.37■□□□□ 0.21
VPS9D1-201ENST00000389386 ZNF579Q8NAF0 562 aaKnown RBP16.37■□□□□ 0.21
VPS9D1-201ENST00000389386 EHBP1Q8NDI1 1231 aa16.37■□□□□ 0.21
VPS9D1-201ENST00000389386 ATP6V0A4Q9HBG4 840 aa16.37■□□□□ 0.21
VPS9D1-201ENST00000389386 CDKL5O76039 1030 aa16.37■□□□□ 0.21
VPS9D1-201ENST00000389386 SEC24CP53992 1094 aa16.37■□□□□ 0.21
VPS9D1-201ENST00000389386 EPHB4P54760 987 aa16.37■□□□□ 0.21
VPS9D1-201ENST00000389386 TCIRG1Q13488 830 aa16.37■□□□□ 0.21
VPS9D1-201ENST00000389386 BARGINQ6ZT62 677 aa16.37■□□□□ 0.21
VPS9D1-201ENST00000389386 CAVIN3Q969G5 261 aa16.37■□□□□ 0.21
VPS9D1-201ENST00000389386 CCDC114Q96M63 670 aa16.37■□□□□ 0.21
VPS9D1-201ENST00000389386 ZIM3Q96PE6 472 aa16.37■□□□□ 0.21
VPS9D1-201ENST00000389386 CDCA7Q9BWT1 371 aaPredicted RBP16.37■□□□□ 0.21
VPS9D1-201ENST00000389386 VPS16Q9H269 839 aa16.37■□□□□ 0.21
VPS9D1-201ENST00000389386 POLD4Q9HCU8 107 aa16.37■□□□□ 0.21
VPS9D1-201ENST00000389386 NWD2Q9ULI1 1742 aa16.36■□□□□ 0.21
VPS9D1-201ENST00000389386 UBR2Q8IWV8 1755 aa16.36■□□□□ 0.21
VPS9D1-201ENST00000389386 ANO9A1A5B4 782 aa16.36■□□□□ 0.21
VPS9D1-201ENST00000389386 EYA2O00167 538 aa16.36■□□□□ 0.21
VPS9D1-201ENST00000389386 ADORA1P30542 326 aa16.36■□□□□ 0.21
VPS9D1-201ENST00000389386 CCNHP51946 323 aaPredicted RBP16.36■□□□□ 0.21
VPS9D1-201ENST00000389386 NCOA7Q8NI08 942 aa16.36■□□□□ 0.21
VPS9D1-201ENST00000389386 OSBP2Q969R2 916 aa16.36■□□□□ 0.21
VPS9D1-201ENST00000389386 ACTR5Q9H9F9 607 aaPredicted RBP16.36■□□□□ 0.21
VPS9D1-201ENST00000389386 TPX2Q9ULW0 747 aaKnown RBP16.36■□□□□ 0.21
VPS9D1-201ENST00000389386 COPB1P53618 953 aaKnown RBP16.36■□□□□ 0.21
VPS9D1-201ENST00000389386 KCNQ4P56696 695 aa16.36■□□□□ 0.21
VPS9D1-201ENST00000389386 SARNPP82979 210 aaKnown RBP16.36■□□□□ 0.21
VPS9D1-201ENST00000389386 TRIM29Q14134 588 aa16.36■□□□□ 0.21
VPS9D1-201ENST00000389386 NOSTRINQ8IVI9 506 aa16.36■□□□□ 0.21
VPS9D1-201ENST00000389386 SMYD4Q8IYR2 804 aaPredicted RBP16.36■□□□□ 0.21
VPS9D1-201ENST00000389386 TBC1D2BQ9UPU7 963 aa16.36■□□□□ 0.21
VPS9D1-201ENST00000389386 FRMD3A2A2Y4 597 aa16.35■□□□□ 0.21
VPS9D1-201ENST00000389386 FAM107AO95990 144 aa16.35■□□□□ 0.21
VPS9D1-201ENST00000389386 FGAP02671 866 aa16.35■□□□□ 0.21
VPS9D1-201ENST00000389386 METAP2P50579 478 aaKnown RBP eCLIP16.35■□□□□ 0.21
VPS9D1-201ENST00000389386 FKBP4Q02790 459 aaKnown RBP eCLIP16.35■□□□□ 0.214e-8■■■■■ 28.9
VPS9D1-201ENST00000389386 ZKSCAN8Q15776 578 aaPredicted RBP16.35■□□□□ 0.21
VPS9D1-201ENST00000389386 CCDC57Q2TAC2 916 aa16.35■□□□□ 0.21
VPS9D1-201ENST00000389386 CREG2Q8IUH2 290 aa16.35■□□□□ 0.21
VPS9D1-201ENST00000389386 OR8K1Q8NGG5 319 aa16.35■□□□□ 0.21
VPS9D1-201ENST00000389386 WDR19Q8NEZ3 1342 aa16.35■□□□□ 0.21
VPS9D1-201ENST00000389386 GOLGA6L7A0A1B0GV03 622 aa16.35■□□□□ 0.21
VPS9D1-201ENST00000389386 KLHL33A6NCF5 533 aa16.35■□□□□ 0.21
VPS9D1-201ENST00000389386 KRT14P02533 472 aa16.35■□□□□ 0.21
VPS9D1-201ENST00000389386 ITIH3Q06033 890 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms