RNA–Protein interactions for RNA: ENST00000379340.9

POLR2J3-201, Transcript of RNA polymerase II subunit J3, humanhuman

TSL 1 (best)

Gene POLR2J3, Length 1,598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-201ENST00000379340 PCDHA5Q9Y5H7 936 aa11.93□□□□□ -0.5
POLR2J3-201ENST00000379340 FAM205CA6NFA0 338 aa11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 H0YIN7 160 aa11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 HSPA8P11142 646 aaKnown RBP11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 SARSP49591 514 aaKnown RBP11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 GRIN1Q05586 938 aa11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 PIK3AP1Q6ZUJ8 805 aa11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 STAG2Q8N3U4 1231 aa11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 SLC44A5Q8NCS7 719 aa11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 TTF2Q9UNY4 1162 aaKnown RBP11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 A0A087WWV3 80 aa11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 CCDC194A0A1B0GVG4 234 aa11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 KLRF2D3W0D1 207 aa11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 LAD1O00515 517 aa11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 ITGBL1O95965 494 aaPredicted RBP11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 SLFN14P0C7P3 912 aa11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 LONP1P36776 959 aaKnown RBP11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 HDLBPQ00341 1268 aaKnown RBP11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 GABPAQ06546 454 aa11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 PTGDRQ13258 359 aa11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 ORC2Q13416 577 aaPredicted RBP11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 MORC3Q14149 939 aa11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 ZNF174Q15697 407 aa11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 SPECC1Q5M775 1068 aa11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 SPATA20Q8TB22 786 aa11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 FBXW7Q969H0 707 aa11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 ZNF622Q969S3 477 aaKnown RBP eCLIP11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 TEKT1Q969V4 418 aa11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 RRP36Q96EU6 259 aaKnown RBP11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 OSBPL5Q9H0X9 879 aaPredicted RBP11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 MAN1B1Q9UKM7 699 aa11.92□□□□□ -0.5
POLR2J3-201ENST00000379340 GREB1LQ9C091 1923 aaPredicted RBP11.91□□□□□ -0.5
POLR2J3-201ENST00000379340 M0R2N6 131 aa11.91□□□□□ -0.5
POLR2J3-201ENST00000379340 STXBP3O00186 592 aa11.91□□□□□ -0.5
POLR2J3-201ENST00000379340 HLA-DOAP06340 250 aa11.91□□□□□ -0.5
POLR2J3-201ENST00000379340 ASPRV1Q53RT3 343 aa11.91□□□□□ -0.5
POLR2J3-201ENST00000379340 DNTTIP2Q5QJE6 756 aaKnown RBP11.91□□□□□ -0.5
POLR2J3-201ENST00000379340 WWC2Q6AWC2 1192 aa11.91□□□□□ -0.5
POLR2J3-201ENST00000379340 KRT25Q7Z3Z0 450 aa11.91□□□□□ -0.5
POLR2J3-201ENST00000379340 SH3RF1Q7Z6J0 888 aa11.91□□□□□ -0.5
POLR2J3-201ENST00000379340 CERS5Q8N5B7 392 aa11.91□□□□□ -0.5
POLR2J3-201ENST00000379340 CCDC150Q8NCX0 1101 aa11.91□□□□□ -0.5
POLR2J3-201ENST00000379340 SYMPKQ92797 1274 aaKnown RBP11.91□□□□□ -0.5
POLR2J3-201ENST00000379340 PRIMPOLQ96LW4 560 aa11.91□□□□□ -0.5
POLR2J3-201ENST00000379340 EHD4Q9H223 541 aa11.91□□□□□ -0.5
POLR2J3-201ENST00000379340 SEC63Q9UGP8 760 aaKnown RBP11.91□□□□□ -0.5
POLR2J3-201ENST00000379340 PYCARDQ9ULZ3 195 aa11.91□□□□□ -0.5
POLR2J3-201ENST00000379340 R3HCC1Q9Y3T6 440 aaKnown RBP11.91□□□□□ -0.5
POLR2J3-201ENST00000379340 IGKV6D-41A0A0C4DH26 115 aa11.9□□□□□ -0.5
POLR2J3-201ENST00000379340 ESYT2A0FGR8 921 aa11.9□□□□□ -0.5
POLR2J3-201ENST00000379340 CYTH3O43739 400 aa11.9□□□□□ -0.5
POLR2J3-201ENST00000379340 NRDCO43847 1150 aa11.9□□□□□ -0.5
POLR2J3-201ENST00000379340 ERCC5P28715 1186 aaPredicted RBP11.9□□□□□ -0.5
POLR2J3-201ENST00000379340 GNA11P29992 359 aa11.9□□□□□ -0.5
POLR2J3-201ENST00000379340 TXLNAP40222 546 aa11.9□□□□□ -0.5
POLR2J3-201ENST00000379340 CC2D2BQ6DHV5 1058 aa11.9□□□□□ -0.5
POLR2J3-201ENST00000379340 FOXP4Q8IVH2 680 aaPredicted RBP11.9□□□□□ -0.5
POLR2J3-201ENST00000379340 LRRC8AQ8IWT6 810 aa11.9□□□□□ -0.5
POLR2J3-201ENST00000379340 IQUBQ8NA54 791 aa11.9□□□□□ -0.5
POLR2J3-201ENST00000379340 GPKOWQ92917 476 aaPredicted RBP eCLIP11.9□□□□□ -0.5
POLR2J3-201ENST00000379340 CNKSR1Q969H4 720 aa11.9□□□□□ -0.5
POLR2J3-201ENST00000379340 CEP95Q96GE4 821 aa11.9□□□□□ -0.5
POLR2J3-201ENST00000379340 ZMYND12Q9H0C1 365 aa11.9□□□□□ -0.5
POLR2J3-201ENST00000379340 TAF1DQ9H5J8 278 aaPredicted RBP11.9□□□□□ -0.5
POLR2J3-201ENST00000379340 C6orf50Q9HD87 102 aa11.9□□□□□ -0.5
POLR2J3-201ENST00000379340 USP40Q9NVE5 1235 aa11.9□□□□□ -0.5
POLR2J3-201ENST00000379340 NRBP1Q9UHY1 535 aa11.9□□□□□ -0.5
POLR2J3-201ENST00000379340 ZNF646O15015 1829 aaPredicted RBP11.9□□□□□ -0.5
POLR2J3-201ENST00000379340 SLX4Q8IY92 1834 aa11.9□□□□□ -0.5
POLR2J3-201ENST00000379340 VWA3AA6NCI4 1184 aa11.89□□□□□ -0.51
POLR2J3-201ENST00000379340 TMEM88BA6NKF7 163 aa11.89□□□□□ -0.51
POLR2J3-201ENST00000379340 NPM3O75607 178 aaKnown RBP11.89□□□□□ -0.51
POLR2J3-201ENST00000379340 PRPHP41219 470 aa11.89□□□□□ -0.51
POLR2J3-201ENST00000379340 FANCCQ00597 558 aa11.89□□□□□ -0.51
POLR2J3-201ENST00000379340 CCDC144BQ3MJ40 725 aa11.89□□□□□ -0.51
POLR2J3-201ENST00000379340 SOGA3Q5TF21 947 aa11.89□□□□□ -0.51
POLR2J3-201ENST00000379340 STRIP1Q5VSL9 837 aa11.89□□□□□ -0.51
POLR2J3-201ENST00000379340 HEATR3Q7Z4Q2 680 aa11.89□□□□□ -0.51
POLR2J3-201ENST00000379340 PDILTQ8N807 584 aa11.89□□□□□ -0.51
POLR2J3-201ENST00000379340 ENOX1Q8TC92 643 aaKnown RBP11.89□□□□□ -0.51
POLR2J3-201ENST00000379340 CACTINQ8WUQ7 758 aaKnown RBP11.89□□□□□ -0.51
POLR2J3-201ENST00000379340 DHX58Q96C10 678 aa11.89□□□□□ -0.51
POLR2J3-201ENST00000379340 GSDMAQ96QA5 445 aa11.89□□□□□ -0.51
POLR2J3-201ENST00000379340 XPO4Q9C0E2 1151 aaKnown RBP11.89□□□□□ -0.51
POLR2J3-201ENST00000379340 RIOX1Q9H6W3 641 aa11.89□□□□□ -0.51
POLR2J3-201ENST00000379340 MTMR4Q9NYA4 1195 aa11.89□□□□□ -0.51
POLR2J3-201ENST00000379340 IFNKQ9P0W0 207 aa11.89□□□□□ -0.51
POLR2J3-201ENST00000379340 SERPINB13Q9UIV8 391 aa11.89□□□□□ -0.51
POLR2J3-201ENST00000379340 PCDHA6Q9UN73 950 aa11.89□□□□□ -0.51
POLR2J3-201ENST00000379340 PCDHA8Q9Y5H6 950 aa11.89□□□□□ -0.51
POLR2J3-201ENST00000379340 SNHG28P0DPA3 235 aa11.88□□□□□ -0.51
POLR2J3-201ENST00000379340 MCM7P33993 719 aa11.88□□□□□ -0.51
POLR2J3-201ENST00000379340 NAPAP54920 295 aa11.88□□□□□ -0.51
POLR2J3-201ENST00000379340 SEMA3FQ13275 785 aa11.88□□□□□ -0.51
POLR2J3-201ENST00000379340 PICALMQ13492 652 aa11.88□□□□□ -0.51
POLR2J3-201ENST00000379340 DOK7Q18PE1 504 aa11.88□□□□□ -0.51
POLR2J3-201ENST00000379340 SLC35G1Q2M3R5 365 aa11.88□□□□□ -0.51
POLR2J3-201ENST00000379340 GRIPAP1Q4V328 841 aa11.88□□□□□ -0.51
POLR2J3-201ENST00000379340 PPP1R18Q6NYC8 613 aa11.88□□□□□ -0.51
POLR2J3-201ENST00000379340 CDC42EP5Q6NZY7 148 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms