RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 TBCCQ15814 346 aa12.7□□□□□ -0.38
VPS13A-205ENST00000376636 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.7□□□□□ -0.38
VPS13A-205ENST00000376636 HELLSQ9NRZ9 838 aa12.7□□□□□ -0.38
VPS13A-205ENST00000376636 RASGRF2O14827 1237 aa12.7□□□□□ -0.38
VPS13A-205ENST00000376636 KLC3Q6P597 504 aa12.7□□□□□ -0.38
VPS13A-205ENST00000376636 DMRT2Q9Y5R5 561 aa12.7□□□□□ -0.38
VPS13A-205ENST00000376636 DCLK2Q8N568 766 aa12.7□□□□□ -0.38
VPS13A-205ENST00000376636 DYNC1I2Q13409 638 aaKnown RBP12.7□□□□□ -0.38
VPS13A-205ENST00000376636 C6orf118Q5T5N4 469 aa12.7□□□□□ -0.38
VPS13A-205ENST00000376636 C4orf50Q6ZRC1 276 aa12.7□□□□□ -0.38
VPS13A-205ENST00000376636 RRAGAQ7L523 313 aa12.7□□□□□ -0.38
VPS13A-205ENST00000376636 TCEANC2Q96MN5 208 aa12.7□□□□□ -0.38
VPS13A-205ENST00000376636 ACTR5Q9H9F9 607 aaPredicted RBP12.7□□□□□ -0.38
VPS13A-205ENST00000376636 BZW2Q9Y6E2 419 aaKnown RBP12.7□□□□□ -0.38
VPS13A-205ENST00000376636 IBTKQ9P2D0 1353 aaPredicted RBP12.7□□□□□ -0.38
VPS13A-205ENST00000376636 FAM95CA0A1B0GW59 222 aa12.7□□□□□ -0.38
VPS13A-205ENST00000376636 MAFGO15525 162 aa12.7□□□□□ -0.38
VPS13A-205ENST00000376636 SPDYE1Q8NFV5 336 aaPredicted RBP12.7□□□□□ -0.38
VPS13A-205ENST00000376636 CEP70Q8NHQ1 597 aa12.7□□□□□ -0.38
VPS13A-205ENST00000376636 PHKBQ93100 1093 aa12.7□□□□□ -0.38
VPS13A-205ENST00000376636 LRRC37BQ96QE4 947 aa12.7□□□□□ -0.38
VPS13A-205ENST00000376636 OLA1Q9NTK5 396 aaKnown RBP12.7□□□□□ -0.38
VPS13A-205ENST00000376636 CAPN11Q9UMQ6 739 aa12.7□□□□□ -0.38
VPS13A-205ENST00000376636 SAT1P21673 171 aa12.69□□□□□ -0.38
VPS13A-205ENST00000376636 MRPL28Q13084 256 aaKnown RBP12.69□□□□□ -0.38
VPS13A-205ENST00000376636 PDE1BQ01064 536 aa12.69□□□□□ -0.38
VPS13A-205ENST00000376636 KLHL29Q96CT2 875 aa12.69□□□□□ -0.38
VPS13A-205ENST00000376636 HOOK2Q96ED9 719 aa12.69□□□□□ -0.38
VPS13A-205ENST00000376636 MRPL40Q9NQ50 206 aaKnown RBP12.69□□□□□ -0.38
VPS13A-205ENST00000376636 F8W031 263 aaPredicted RBP12.69□□□□□ -0.38
VPS13A-205ENST00000376636 SF3A3Q12874 501 aaKnown RBP eCLIP12.69□□□□□ -0.38
VPS13A-205ENST00000376636 TTC6Q86TZ1 520 aa12.69□□□□□ -0.38
VPS13A-205ENST00000376636 ST7Q9NRC1 585 aa12.69□□□□□ -0.38
VPS13A-205ENST00000376636 C1orf112Q9NSG2 853 aa12.69□□□□□ -0.38
VPS13A-205ENST00000376636 HERC4Q5GLZ8 1057 aaPredicted RBP12.69□□□□□ -0.38
VPS13A-205ENST00000376636 JDP2Q8WYK2 163 aa12.69□□□□□ -0.38
VPS13A-205ENST00000376636 H0YCG3 227 aa12.69□□□□□ -0.38
VPS13A-205ENST00000376636 GSDMAQ96QA5 445 aa12.69□□□□□ -0.38
VPS13A-205ENST00000376636 NCAPH2Q6IBW4 605 aa12.69□□□□□ -0.38
VPS13A-205ENST00000376636 OR9Q1Q8NGQ5 310 aa12.69□□□□□ -0.38
VPS13A-205ENST00000376636 ATP6V1E2Q96A05 226 aa12.69□□□□□ -0.38
VPS13A-205ENST00000376636 JPH2Q9BR39 696 aaPredicted RBP12.69□□□□□ -0.38
VPS13A-205ENST00000376636 MYO10Q9HD67 2058 aa12.69□□□□□ -0.38
VPS13A-205ENST00000376636 OCM2P0CE71 109 aa12.69□□□□□ -0.38
VPS13A-205ENST00000376636 OCMP0CE72 109 aaPredicted RBP12.69□□□□□ -0.38
VPS13A-205ENST00000376636 MTX1Q13505 466 aa12.69□□□□□ -0.38
VPS13A-205ENST00000376636 NR1H4Q96RI1 486 aaPredicted RBP12.68□□□□□ -0.38
VPS13A-205ENST00000376636 SLF1Q9BQI6 1058 aa12.68□□□□□ -0.38
VPS13A-205ENST00000376636 RRP15Q9Y3B9 282 aaKnown RBP12.68□□□□□ -0.38
VPS13A-205ENST00000376636 ZBTB41Q5SVQ8 909 aa12.68□□□□□ -0.38
VPS13A-205ENST00000376636 BBS5Q8N3I7 341 aa12.68□□□□□ -0.38
VPS13A-205ENST00000376636 TCP11Q8WWU5 503 aa12.68□□□□□ -0.38
VPS13A-205ENST00000376636 ING2Q9H160 280 aa12.68□□□□□ -0.38
VPS13A-205ENST00000376636 BIN2Q9UBW5 565 aaPredicted RBP12.68□□□□□ -0.38
VPS13A-205ENST00000376636 NFE2L3Q9Y4A8 694 aa12.68□□□□□ -0.38
VPS13A-205ENST00000376636 ANGEL1Q9UNK9 670 aaKnown RBP12.68□□□□□ -0.38
VPS13A-205ENST00000376636 CHEK2O96017 543 aa12.68□□□□□ -0.38
VPS13A-205ENST00000376636 DDX42Q86XP3 938 aaKnown RBP eCLIP12.68□□□□□ -0.38
VPS13A-205ENST00000376636 MBIPQ9NS73 344 aa12.68□□□□□ -0.38
VPS13A-205ENST00000376636 IVNS1ABPQ9Y6Y0 642 aa12.68□□□□□ -0.38
VPS13A-205ENST00000376636 KRT25Q7Z3Z0 450 aa12.68□□□□□ -0.38
VPS13A-205ENST00000376636 STX19Q8N4C7 294 aa12.68□□□□□ -0.38
VPS13A-205ENST00000376636 CC2D2AQ9P2K1 1620 aa12.68□□□□□ -0.38
VPS13A-205ENST00000376636 DCTN3O75935 186 aa12.68□□□□□ -0.38
VPS13A-205ENST00000376636 LRRC8BQ6P9F7 803 aa12.68□□□□□ -0.38
VPS13A-205ENST00000376636 SOS1Q07889 1333 aaPredicted RBP12.67□□□□□ -0.38
VPS13A-205ENST00000376636 ALDH1L1O75891 902 aa12.67□□□□□ -0.38
VPS13A-205ENST00000376636 APOA1P02647 267 aa12.67□□□□□ -0.38
VPS13A-205ENST00000376636 PIK3AP1Q6ZUJ8 805 aa12.67□□□□□ -0.38
VPS13A-205ENST00000376636 TRIM11Q96F44 468 aa12.67□□□□□ -0.38
VPS13A-205ENST00000376636 DACH2Q96NX9 599 aa12.67□□□□□ -0.38
VPS13A-205ENST00000376636 PKD2L1Q9P0L9 805 aa12.67□□□□□ -0.38
VPS13A-205ENST00000376636 DBNLQ9UJU6 430 aaKnown RBP12.67□□□□□ -0.38
VPS13A-205ENST00000376636 PPP1R2P3Q6NXS1 205 aa12.67□□□□□ -0.38
VPS13A-205ENST00000376636 LZICQ8WZA0 190 aa12.67□□□□□ -0.38
VPS13A-205ENST00000376636 MED10Q9BTT4 135 aa12.67□□□□□ -0.38
VPS13A-205ENST00000376636 KIF17Q9P2E2 1029 aa12.67□□□□□ -0.38
VPS13A-205ENST00000376636 HOXA7P31268 230 aaPredicted RBP12.67□□□□□ -0.38
VPS13A-205ENST00000376636 CCT5P48643 541 aa12.67□□□□□ -0.38
VPS13A-205ENST00000376636 SLC17A8Q8NDX2 589 aa12.67□□□□□ -0.38
VPS13A-205ENST00000376636 TRIM8Q9BZR9 551 aa12.67□□□□□ -0.38
VPS13A-205ENST00000376636 FAM207AQ9NSI2 230 aaPredicted RBP12.67□□□□□ -0.38
VPS13A-205ENST00000376636 MAPK8IP1Q9UQF2 711 aa12.67□□□□□ -0.38
VPS13A-205ENST00000376636 ZC3H12CQ9C0D7 883 aaKnown RBP12.67□□□□□ -0.38
VPS13A-205ENST00000376636 ATP8B1O43520 1251 aa12.67□□□□□ -0.38
VPS13A-205ENST00000376636 TTC38Q5R3I4 469 aa12.67□□□□□ -0.38
VPS13A-205ENST00000376636 CHST3Q7LGC8 479 aa12.67□□□□□ -0.38
VPS13A-205ENST00000376636 EYA3Q99504 573 aa12.67□□□□□ -0.38
VPS13A-205ENST00000376636 ANKRD36BQ8N2N9 1353 aa12.67□□□□□ -0.38
VPS13A-205ENST00000376636 BFSP1Q12934 665 aa12.67□□□□□ -0.38
VPS13A-205ENST00000376636 TSTA3Q13630 321 aaPredicted RBP12.67□□□□□ -0.38
VPS13A-205ENST00000376636 YWHAGP61981 247 aaKnown RBP eCLIP12.67□□□□□ -0.38
VPS13A-205ENST00000376636 HLA-DPA1P20036 260 aa12.67□□□□□ -0.38
VPS13A-205ENST00000376636 ZC3H18Q86VM9 953 aaKnown RBP12.67□□□□□ -0.38
VPS13A-205ENST00000376636 CHPF2Q9P2E5 772 aa12.67□□□□□ -0.38
VPS13A-205ENST00000376636 SBNO2Q9Y2G9 1366 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 RPS6KB1P23443 525 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 DAB2P98082 770 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 ANKRD44Q8N8A2 993 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 SNX29Q8TEQ0 813 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms