RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 HERC4Q5GLZ8 1057 aaPredicted RBP9.51□□□□□ -0.89
SYNE1-206ENST00000367253 CEP85LQ5SZL2 805 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 RC3H1Q5TC82 1133 aaKnown RBP9.51□□□□□ -0.89
SYNE1-206ENST00000367253 ORAI2Q96SN7 254 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 IWS1Q96ST2 819 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 RASAL2Q9UJF2 1139 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 ZNF711Q9Y462 761 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 LRRD1A4D1F6 860 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 ALDH3A1P30838 453 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 C9orf131Q5VYM1 1079 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 INTS8Q75QN2 995 aaKnown RBP9.51□□□□□ -0.89
SYNE1-206ENST00000367253 KIAA0825Q8IV33 1275 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 MSL3Q8N5Y2 521 aaKnown RBP9.51□□□□□ -0.89
SYNE1-206ENST00000367253 SPDL1Q96EA4 605 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 CCDC17Q96LX7 622 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 SH3GL2Q99962 352 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 YY1AP1Q9H869 796 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 VCX3AQ9NNX9 186 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 C6orf203Q9P0P8 240 aaPredicted RBP9.51□□□□□ -0.89
SYNE1-206ENST00000367253 PIK3C2GO75747 1445 aa9.5□□□□□ -0.89
SYNE1-206ENST00000367253 STMND1H3BQB6 276 aa9.5□□□□□ -0.89
SYNE1-206ENST00000367253 KRT7P08729 469 aa9.5□□□□□ -0.89
SYNE1-206ENST00000367253 IGFBP4P22692 258 aa9.5□□□□□ -0.89
SYNE1-206ENST00000367253 GBP1P32455 592 aa9.5□□□□□ -0.89
SYNE1-206ENST00000367253 MCMDC2Q4G0Z9 681 aa9.5□□□□□ -0.89
SYNE1-206ENST00000367253 HAUS3Q68CZ6 603 aa9.5□□□□□ -0.89
SYNE1-206ENST00000367253 ADALQ6DHV7 355 aa9.5□□□□□ -0.89
SYNE1-206ENST00000367253 DOLKQ9UPQ8 538 aa9.5□□□□□ -0.89
SYNE1-206ENST00000367253 SOS1Q07889 1333 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-206ENST00000367253 UGGT1Q9NYU2 1555 aa9.5□□□□□ -0.89
SYNE1-206ENST00000367253 GIPC1O14908 333 aa9.5□□□□□ -0.89
SYNE1-206ENST00000367253 SERPINI2O75830 405 aa9.5□□□□□ -0.89
SYNE1-206ENST00000367253 ARHGAP25P42331 645 aa9.5□□□□□ -0.89
SYNE1-206ENST00000367253 MTIF2P46199 727 aaKnown RBP9.5□□□□□ -0.89
SYNE1-206ENST00000367253 CCDC184Q52MB2 194 aa9.5□□□□□ -0.89
SYNE1-206ENST00000367253 RNF217Q8TC41 542 aa9.5□□□□□ -0.89
SYNE1-206ENST00000367253 TMA7Q9Y2S6 64 aaKnown RBP9.5□□□□□ -0.89
SYNE1-206ENST00000367253 AKR1B10O60218 316 aa9.5□□□□□ -0.89
SYNE1-206ENST00000367253 PRPF6O94906 941 aaKnown RBP9.5□□□□□ -0.89
SYNE1-206ENST00000367253 CELF2O95319 508 aaKnown RBP9.5□□□□□ -0.89
SYNE1-206ENST00000367253 KCNA1Q09470 495 aa9.5□□□□□ -0.89
SYNE1-206ENST00000367253 VEPH1Q14D04 833 aa9.5□□□□□ -0.89
SYNE1-206ENST00000367253 CNNM3Q8NE01 707 aa9.5□□□□□ -0.89
SYNE1-206ENST00000367253 NLRP7Q8WX94 980 aa9.5□□□□□ -0.89
SYNE1-206ENST00000367253 CFAP36Q96G28 342 aa9.5□□□□□ -0.89
SYNE1-206ENST00000367253 CDCA7LQ96GN5 454 aa9.5□□□□□ -0.89
SYNE1-206ENST00000367253 BLMP54132 1417 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-206ENST00000367253 RPSAP08865 295 aaKnown RBP9.5□□□□□ -0.89
SYNE1-206ENST00000367253 ABL2P42684 1182 aa9.5□□□□□ -0.89
SYNE1-206ENST00000367253 TCP10Q12799 353 aa9.5□□□□□ -0.89
SYNE1-206ENST00000367253 RBM46Q8TBY0 533 aaKnown RBP9.5□□□□□ -0.89
SYNE1-206ENST00000367253 BOLA2Q9H3K6 86 aa9.5□□□□□ -0.89
SYNE1-206ENST00000367253 C1orf115Q9H7X2 142 aa9.5□□□□□ -0.89
SYNE1-206ENST00000367253 ABCA6Q8N139 1617 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 ZNF189O75820 626 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-206ENST00000367253 RPL13P26373 211 aaKnown RBP9.49□□□□□ -0.89
SYNE1-206ENST00000367253 CYLC1P35663 651 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-206ENST00000367253 HHATQ5VTY9 493 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 HDXQ7Z353 690 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 FCHSD1Q86WN1 690 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 CCT6BQ92526 530 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 LZTS2Q9BRK4 669 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 SELENOOQ9BVL4 669 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 EDEM3Q9BZQ6 932 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 ZSCAN16Q9H4T2 348 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-206ENST00000367253 SYNDIG1Q9H7V2 258 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 hCG_2014768A0A024R1R8 64 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 NDUFAB1O14561 156 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 KRT17Q04695 432 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 PUM3Q15397 648 aaKnown RBP9.49□□□□□ -0.89
SYNE1-206ENST00000367253 TXNRD1Q16881 649 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 KSR2Q6VAB6 950 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 RNF180Q86T96 592 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 PPP1R9BQ96SB3 815 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 XDHP47989 1333 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 PLEKHG1Q9ULL1 1385 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 GOLGA8QA0A0J9YX86 632 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 ARHGEF35A5YM69 484 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 GOLGA8OA6NCC3 632 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 GOLGA8NF8WBI6 632 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 MYL3P08590 195 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 PTPAQ15257 358 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 AAK1Q2M2I8 961 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 FSIP1Q8NA03 581 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 DEPTORQ8TB45 409 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 MED10Q9BTT4 135 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 TXNDC16Q9P2K2 825 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 CLTCL1P53675 1640 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 USP17L3A6NCW0 530 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 USP17L4A6NCW7 530 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 ALAS1P13196 640 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 ARL4DP49703 201 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 USP17L1Q7RTZ2 530 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 CCDC186Q7Z3E2 898 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 NOP9Q86U38 636 aaKnown RBP9.49□□□□□ -0.89
SYNE1-206ENST00000367253 GATAD2AQ86YP4 633 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 TRMT44Q8IYL2 757 aaKnown RBP9.49□□□□□ -0.89
SYNE1-206ENST00000367253 HOXC10Q9NYD6 342 aa9.49□□□□□ -0.89
SYNE1-206ENST00000367253 E9PCH4 1651 aa9.48□□□□□ -0.89
SYNE1-206ENST00000367253 ARHGEF40Q8TER5 1519 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms