RNA–Protein interactions for RNA: ENST00000354757.4

PCDHB11-201, Transcript of protocadherin beta 11, humanhuman

APPRIS P1 BASIC

Gene PCDHB11, Length 4,198 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11-201ENST00000354757 FANCCQ00597 558 aa13.86□□□□□ -0.19
PCDHB11-201ENST00000354757 CACNB1Q02641 598 aaPredicted RBP13.86□□□□□ -0.19
PCDHB11-201ENST00000354757 SPAG1Q07617 926 aa13.86□□□□□ -0.19
PCDHB11-201ENST00000354757 PLCD3Q8N3E9 789 aa13.86□□□□□ -0.19
PCDHB11-201ENST00000354757 RUFY1Q96T51 708 aa13.86□□□□□ -0.19
PCDHB11-201ENST00000354757 POLLQ9UGP5 575 aa13.86□□□□□ -0.19
PCDHB11-201ENST00000354757 IFT172Q9UG01 1749 aa13.85□□□□□ -0.19
PCDHB11-201ENST00000354757 CMA1P23946 247 aa13.85□□□□□ -0.19
PCDHB11-201ENST00000354757 CASP1P29466 404 aa13.85□□□□□ -0.19
PCDHB11-201ENST00000354757 MRVI1Q9Y6F6 885 aa13.85□□□□□ -0.19
PCDHB11-201ENST00000354757 RIOK3O14730 519 aaKnown RBP13.85□□□□□ -0.19
PCDHB11-201ENST00000354757 BMP3P12645 472 aa13.85□□□□□ -0.19
PCDHB11-201ENST00000354757 GPS2Q13227 327 aa13.85□□□□□ -0.19
PCDHB11-201ENST00000354757 AMNQ9BXJ7 453 aa13.85□□□□□ -0.19
PCDHB11-201ENST00000354757 TNS2Q63HR2 1409 aa13.85□□□□□ -0.19
PCDHB11-201ENST00000354757 GAS7O60861 476 aa13.85□□□□□ -0.19
PCDHB11-201ENST00000354757 OR52Z1P0C646 297 aa13.85□□□□□ -0.19
PCDHB11-201ENST00000354757 CETN1Q12798 172 aa13.85□□□□□ -0.19
PCDHB11-201ENST00000354757 TBC1D8BQ0IIM8 1120 aa13.84□□□□□ -0.19
PCDHB11-201ENST00000354757 GPATCH4Q5T3I0 446 aaKnown RBP13.84□□□□□ -0.19
PCDHB11-201ENST00000354757 DCAF15Q66K64 600 aa13.84□□□□□ -0.19
PCDHB11-201ENST00000354757 FBXO33Q7Z6M2 555 aa13.84□□□□□ -0.19
PCDHB11-201ENST00000354757 CCDC65Q8IXS2 484 aa13.84□□□□□ -0.19
PCDHB11-201ENST00000354757 ZNF341Q9BYN7 854 aa13.84□□□□□ -0.19
PCDHB11-201ENST00000354757 DHX36Q9H2U1 1008 aaKnown RBP13.84□□□□□ -0.19
PCDHB11-201ENST00000354757 BCL2L12Q9HB09 334 aa13.84□□□□□ -0.19
PCDHB11-201ENST00000354757 SYNRGQ9UMZ2 1314 aa13.84□□□□□ -0.19
PCDHB11-201ENST00000354757 ARHGEF35A5YM69 484 aa13.84□□□□□ -0.19
PCDHB11-201ENST00000354757 DPEP1P16444 411 aa13.84□□□□□ -0.19
PCDHB11-201ENST00000354757 ANTXR2P58335 489 aa13.84□□□□□ -0.19
PCDHB11-201ENST00000354757 FAM193AP78312 1265 aa13.84□□□□□ -0.19
PCDHB11-201ENST00000354757 DPCR1Q3MIW9 517 aa13.84□□□□□ -0.19
PCDHB11-201ENST00000354757 DGKHQ86XP1 1220 aa13.84□□□□□ -0.19
PCDHB11-201ENST00000354757 CRAMP1Q96RY5 1269 aa13.84□□□□□ -0.19
PCDHB11-201ENST00000354757 POLD4Q9HCU8 107 aa13.84□□□□□ -0.19
PCDHB11-201ENST00000354757 SALL3Q9BXA9 1300 aa13.84□□□□□ -0.19
PCDHB11-201ENST00000354757 TMCO5BA8MYB1 307 aa13.84□□□□□ -0.19
PCDHB11-201ENST00000354757 HAUS3Q68CZ6 603 aa13.84□□□□□ -0.19
PCDHB11-201ENST00000354757 TMTC3Q6ZXV5 915 aa13.84□□□□□ -0.19
PCDHB11-201ENST00000354757 EEPD1Q7L9B9 569 aa13.84□□□□□ -0.19
PCDHB11-201ENST00000354757 DDX25Q9UHL0 483 aaKnown RBP13.84□□□□□ -0.19
PCDHB11-201ENST00000354757 IVNS1ABPQ9Y6Y0 642 aa13.84□□□□□ -0.19
PCDHB11-201ENST00000354757 USP17L15C9J2P7 530 aa13.83□□□□□ -0.19
PCDHB11-201ENST00000354757 USP17L13C9JLJ4 530 aa13.83□□□□□ -0.19
PCDHB11-201ENST00000354757 USP17L11C9JVI0 530 aa13.83□□□□□ -0.19
PCDHB11-201ENST00000354757 USP17L18D6R9N7 530 aa13.83□□□□□ -0.19
PCDHB11-201ENST00000354757 USP17L22D6RA61 530 aa13.83□□□□□ -0.19
PCDHB11-201ENST00000354757 USP17L17D6RBQ6 530 aa13.83□□□□□ -0.19
PCDHB11-201ENST00000354757 USP17L19D6RCP7 530 aa13.83□□□□□ -0.19
PCDHB11-201ENST00000354757 USP17L20D6RJB6 530 aa13.83□□□□□ -0.19
PCDHB11-201ENST00000354757 USP17L24Q0WX57 530 aa13.83□□□□□ -0.19
PCDHB11-201ENST00000354757 USP17L6PQ6QN14 398 aa13.83□□□□□ -0.19
PCDHB11-201ENST00000354757 KRBA2Q6ZNG9 492 aa13.83□□□□□ -0.19
PCDHB11-201ENST00000354757 SWAP70Q9UH65 585 aa13.83□□□□□ -0.19
PCDHB11-201ENST00000354757 NLRP12P59046 1061 aa13.83□□□□□ -0.2
PCDHB11-201ENST00000354757 RAPGEF1Q13905 1077 aa13.83□□□□□ -0.2
PCDHB11-201ENST00000354757 LONRF3Q496Y0 759 aa13.83□□□□□ -0.2
PCDHB11-201ENST00000354757 VPS36Q86VN1 386 aa13.83□□□□□ -0.2
PCDHB11-201ENST00000354757 ANKRD35Q8N283 1001 aa13.83□□□□□ -0.2
PCDHB11-201ENST00000354757 XPO4Q9C0E2 1151 aaKnown RBP13.83□□□□□ -0.2
PCDHB11-201ENST00000354757 RCOR1Q9UKL0 485 aa13.83□□□□□ -0.2
PCDHB11-201ENST00000354757 DNM3Q9UQ16 869 aa13.83□□□□□ -0.2
PCDHB11-201ENST00000354757 RGPD8O14715 1765 aaPredicted RBP13.83□□□□□ -0.2
PCDHB11-201ENST00000354757 FAM205CA6NFA0 338 aa13.83□□□□□ -0.2
PCDHB11-201ENST00000354757 EXOSC10Q01780 885 aaKnown RBP13.83□□□□□ -0.2
PCDHB11-201ENST00000354757 PRPF4BQ13523 1007 aaKnown RBP13.83□□□□□ -0.2
PCDHB11-201ENST00000354757 HSP90B2PQ58FF3 399 aa13.83□□□□□ -0.2
PCDHB11-201ENST00000354757 C12orf60Q5U649 245 aa13.83□□□□□ -0.2
PCDHB11-201ENST00000354757 ADGRA1Q86SQ6 560 aa13.83□□□□□ -0.2
PCDHB11-201ENST00000354757 CCDC150Q8NCX0 1101 aa13.83□□□□□ -0.2
PCDHB11-201ENST00000354757 CTAGE1Q96RT6 745 aa13.83□□□□□ -0.2
PCDHB11-201ENST00000354757 FOXP1Q9H334 677 aaPredicted RBP13.83□□□□□ -0.2
PCDHB11-201ENST00000354757 SLC39A2Q9NP94 309 aa13.83□□□□□ -0.2
PCDHB11-201ENST00000354757 EEF2P13639 858 aaKnown RBP13.83□□□□□ -0.2
PCDHB11-201ENST00000354757 PAK1Q13153 545 aa13.83□□□□□ -0.2
PCDHB11-201ENST00000354757 ASPRV1Q53RT3 343 aa13.83□□□□□ -0.2
PCDHB11-201ENST00000354757 TAF4BQ92750 862 aa13.83□□□□□ -0.2
PCDHB11-201ENST00000354757 NOC4LQ9BVI4 516 aaKnown RBP13.83□□□□□ -0.2
PCDHB11-201ENST00000354757 FANCLQ9NW38 375 aa13.83□□□□□ -0.2
PCDHB11-201ENST00000354757 PHACTR2O75167 634 aa13.82□□□□□ -0.2
PCDHB11-201ENST00000354757 KRT13P13646 458 aa13.82□□□□□ -0.2
PCDHB11-201ENST00000354757 CASQ1P31415 396 aa13.82□□□□□ -0.2
PCDHB11-201ENST00000354757 LRMPQ12912 555 aa13.82□□□□□ -0.2
PCDHB11-201ENST00000354757 TAF3Q5VWG9 929 aa13.82□□□□□ -0.2
PCDHB11-201ENST00000354757 NCAPG2Q86XI2 1143 aa13.82□□□□□ -0.2
PCDHB11-201ENST00000354757 IGSF22Q8N9C0 903 aa13.82□□□□□ -0.2
PCDHB11-201ENST00000354757 CENPHQ9H3R5 247 aa13.82□□□□□ -0.2
PCDHB11-201ENST00000354757 PCDHA4Q9UN74 947 aa13.82□□□□□ -0.2
PCDHB11-201ENST00000354757 USP17L10C9JJH3 530 aa13.82□□□□□ -0.2
PCDHB11-201ENST00000354757 SMIM22K7EJ46 135 aa13.82□□□□□ -0.2
PCDHB11-201ENST00000354757 MEIS1O00470 390 aa13.82□□□□□ -0.2
PCDHB11-201ENST00000354757 DPH6Q7L8W6 267 aa13.82□□□□□ -0.2
PCDHB11-201ENST00000354757 MYCT1Q8N699 235 aa13.82□□□□□ -0.2
PCDHB11-201ENST00000354757 JADE2Q9NQC1 790 aa13.82□□□□□ -0.2
PCDHB11-201ENST00000354757 POLR3EQ9NVU0 708 aa13.82□□□□□ -0.2
PCDHB11-201ENST00000354757 GCOM1H8Y6P7 765 aaPredicted RBP13.82□□□□□ -0.2
PCDHB11-201ENST00000354757 POLR3GO15318 223 aaPredicted RBP13.82□□□□□ -0.2
PCDHB11-201ENST00000354757 PRPF3O43395 683 aaKnown RBP13.82□□□□□ -0.2
PCDHB11-201ENST00000354757 POLR2MP0CAP2 368 aa13.82□□□□□ -0.2
PCDHB11-201ENST00000354757 CDC37Q16543 378 aaPredicted RBP13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms