RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 SLF1Q9BQI6 1058 aa25.82■■□□□ 1.72
SDC3-202ENST00000339394 RBM28Q9NW13 759 aaKnown RBP25.82■■□□□ 1.72
SDC3-202ENST00000339394 HOXC10Q9NYD6 342 aa25.82■■□□□ 1.72
SDC3-202ENST00000339394 MCM2P49736 904 aa25.81■■□□□ 1.72
SDC3-202ENST00000339394 FAM160B2Q86V87 743 aa25.81■■□□□ 1.72
SDC3-202ENST00000339394 KIFC2Q96AC6 838 aa25.81■■□□□ 1.72
SDC3-202ENST00000339394 NCOA5Q9HCD5 579 aaKnown RBP25.81■■□□□ 1.72
SDC3-202ENST00000339394 PPP1R9AQ9ULJ8 1098 aa25.81■■□□□ 1.72
SDC3-202ENST00000339394 NID2Q14112 1375 aa25.81■■□□□ 1.72
SDC3-202ENST00000339394 CCDC196A0A1B0GTZ2 297 aa25.8■■□□□ 1.72
SDC3-202ENST00000339394 PFKFB2O60825 505 aa25.8■■□□□ 1.72
SDC3-202ENST00000339394 DSG3P32926 999 aa25.8■■□□□ 1.72
SDC3-202ENST00000339394 NBPF11Q86T75 865 aa25.8■■□□□ 1.72
SDC3-202ENST00000339394 CMTR1Q8N1G2 835 aaKnown RBP25.8■■□□□ 1.72
SDC3-202ENST00000339394 PARK7Q99497 189 aaKnown RBP25.8■■□□□ 1.72
SDC3-202ENST00000339394 SLKQ9H2G2 1235 aaPredicted RBP25.8■■□□□ 1.72
SDC3-202ENST00000339394 SPDYE16A6NNV3 312 aaPredicted RBP25.79■■□□□ 1.72
SDC3-202ENST00000339394 PLEKHA8P1O95397 391 aa25.79■■□□□ 1.72
SDC3-202ENST00000339394 ALDH1A1P00352 501 aa25.79■■□□□ 1.72
SDC3-202ENST00000339394 GNAQP50148 359 aa25.79■■□□□ 1.72
SDC3-202ENST00000339394 HERVK_113P62684 666 aa25.79■■□□□ 1.72
SDC3-202ENST00000339394 SCRN1Q12765 414 aa25.79■■□□□ 1.72
SDC3-202ENST00000339394 TMTC3Q6ZXV5 915 aa25.79■■□□□ 1.72
SDC3-202ENST00000339394 SRBD1Q8N5C6 995 aaKnown RBP25.79■■□□□ 1.72
SDC3-202ENST00000339394 PRR12Q9ULL5 1215 aa25.79■■□□□ 1.72
SDC3-202ENST00000339394 MYPNQ86TC9 1320 aa25.78■■□□□ 1.72
SDC3-202ENST00000339394 TAF1CQ15572 869 aaPredicted RBP25.78■■□□□ 1.72
SDC3-202ENST00000339394 SYDE2Q5VT97 1194 aa25.78■■□□□ 1.72
SDC3-202ENST00000339394 NECAB1Q8N987 351 aa25.78■■□□□ 1.72
SDC3-202ENST00000339394 SMCR8Q8TEV9 937 aaPredicted RBP25.78■■□□□ 1.72
SDC3-202ENST00000339394 ATG4CQ96DT6 458 aa25.78■■□□□ 1.72
SDC3-202ENST00000339394 ZSCAN31Q96LW9 406 aaPredicted RBP25.78■■□□□ 1.72
SDC3-202ENST00000339394 LZTS2Q9BRK4 669 aa25.78■■□□□ 1.72
SDC3-202ENST00000339394 CYTH3O43739 400 aa25.78■■□□□ 1.72
SDC3-202ENST00000339394 SLC35G1Q2M3R5 365 aa25.78■■□□□ 1.72
SDC3-202ENST00000339394 ADGRF4Q8IZF3 695 aa25.78■■□□□ 1.72
SDC3-202ENST00000339394 CCDC82Q8N4S0 544 aa25.78■■□□□ 1.72
SDC3-202ENST00000339394 ADAMTS5Q9UNA0 930 aa25.78■■□□□ 1.72
SDC3-202ENST00000339394 POTEEQ6S8J3 1075 aa25.77■■□□□ 1.72
SDC3-202ENST00000339394 LBX2Q6XYB7 198 aa25.77■■□□□ 1.72
SDC3-202ENST00000339394 GTF3C6Q969F1 213 aa25.77■■□□□ 1.72
SDC3-202ENST00000339394 VAT1LQ9HCJ6 419 aa25.77■■□□□ 1.72
SDC3-202ENST00000339394 VWA5AO00534 786 aa25.76■■□□□ 1.71
SDC3-202ENST00000339394 SMARCA1P28370 1054 aa25.76■■□□□ 1.71
SDC3-202ENST00000339394 SNX21Q969T3 373 aa25.76■■□□□ 1.71
SDC3-202ENST00000339394 TMX3Q96JJ7 454 aa25.76■■□□□ 1.71
SDC3-202ENST00000339394 RIOX1Q9H6W3 641 aa25.76■■□□□ 1.71
SDC3-202ENST00000339394 JMJD4Q9H9V9 463 aa25.76■■□□□ 1.71
SDC3-202ENST00000339394 SH2B1Q9NRF2 756 aaPredicted RBP25.76■■□□□ 1.71
SDC3-202ENST00000339394 CA12O43570 354 aa25.75■■□□□ 1.71
SDC3-202ENST00000339394 DHX16O60231 1041 aaKnown RBP25.75■■□□□ 1.71
SDC3-202ENST00000339394 FUT2Q10981 343 aa25.75■■□□□ 1.71
SDC3-202ENST00000339394 CRHR2Q13324 411 aa25.75■■□□□ 1.71
SDC3-202ENST00000339394 NTRK3Q16288 839 aa25.75■■□□□ 1.71
SDC3-202ENST00000339394 SPZ1Q9BXG8 430 aa25.75■■□□□ 1.71
SDC3-202ENST00000339394 SLC38A10Q9HBR0 1119 aa25.75■■□□□ 1.71
SDC3-202ENST00000339394 ZFYVE28Q9HCC9 887 aa25.75■■□□□ 1.71
SDC3-202ENST00000339394 RNF186Q9NXI6 227 aa25.75■■□□□ 1.71
SDC3-202ENST00000339394 THSD7BQ9C0I4 1608 aa25.74■■□□□ 1.71
SDC3-202ENST00000339394 SNAP25P60880 206 aa25.74■■□□□ 1.71
SDC3-202ENST00000339394 MAP2K1Q02750 393 aaPredicted RBP25.74■■□□□ 1.71
SDC3-202ENST00000339394 CPLX1O14810 134 aa25.73■■□□□ 1.71
SDC3-202ENST00000339394 TLR2O60603 784 aa25.73■■□□□ 1.71
SDC3-202ENST00000339394 TRPA1O75762 1119 aa25.73■■□□□ 1.71
SDC3-202ENST00000339394 ST3GAL1Q11201 340 aa25.73■■□□□ 1.71
SDC3-202ENST00000339394 GTF3C2Q8WUA4 911 aaPredicted RBP25.73■■□□□ 1.71
SDC3-202ENST00000339394 RANBP17Q9H2T7 1088 aaKnown RBP25.73■■□□□ 1.71
SDC3-202ENST00000339394 RBPJLQ9UBG7 517 aa25.73■■□□□ 1.71
SDC3-202ENST00000339394 PEX10O60683 326 aa25.73■■□□□ 1.71
SDC3-202ENST00000339394 ZBED4O75132 1171 aa25.73■■□□□ 1.71
SDC3-202ENST00000339394 FDX1P10109 184 aa25.73■■□□□ 1.71
SDC3-202ENST00000339394 GCLCP48506 637 aaPredicted RBP25.73■■□□□ 1.71
SDC3-202ENST00000339394 MB21D1Q8N884 522 aa25.73■■□□□ 1.71
SDC3-202ENST00000339394 REPS2Q8NFH8 660 aa25.73■■□□□ 1.71
SDC3-202ENST00000339394 MTMR8Q96EF0 704 aa25.73■■□□□ 1.71
SDC3-202ENST00000339394 TXNRD2Q9NNW7 524 aa25.73■■□□□ 1.71
SDC3-202ENST00000339394 PPFIA3O75145 1194 aa25.72■■□□□ 1.71
SDC3-202ENST00000339394 IFNAR1P17181 557 aa25.72■■□□□ 1.71
SDC3-202ENST00000339394 TMEM132BQ14DG7 1078 aa25.72■■□□□ 1.71
SDC3-202ENST00000339394 CCDC83Q8IWF9 413 aa25.72■■□□□ 1.71
SDC3-202ENST00000339394 PHKBQ93100 1093 aa25.72■■□□□ 1.71
SDC3-202ENST00000339394 PIGSQ96S52 555 aa25.72■■□□□ 1.71
SDC3-202ENST00000339394 R3HDMLQ9H3Y0 253 aa25.72■■□□□ 1.71
SDC3-202ENST00000339394 BTBD7Q9P203 1132 aa25.72■■□□□ 1.71
SDC3-202ENST00000339394 ADGRA2Q96PE1 1338 aa25.71■■□□□ 1.71
SDC3-202ENST00000339394 CPLX2Q6PUV4 134 aaKnown RBP25.71■■□□□ 1.71
SDC3-202ENST00000339394 HOMER1Q86YM7 354 aa25.71■■□□□ 1.71
SDC3-202ENST00000339394 ANKRD13CQ8N6S4 541 aa25.71■■□□□ 1.71
SDC3-202ENST00000339394 PIBF1Q8WXW3 757 aa25.71■■□□□ 1.71
SDC3-202ENST00000339394 PAGR1Q9BTK6 254 aa25.71■■□□□ 1.71
SDC3-202ENST00000339394 RABGAP1Q9Y3P9 1069 aa25.71■■□□□ 1.71
SDC3-202ENST00000339394 CNTNAP5Q8WYK1 1306 aa25.71■■□□□ 1.71
SDC3-202ENST00000339394 CNMDO75829 334 aa25.7■■□□□ 1.71
SDC3-202ENST00000339394 CTDNEP1O95476 244 aa25.7■■□□□ 1.71
SDC3-202ENST00000339394 TBC1D8O95759 1140 aa25.7■■□□□ 1.71
SDC3-202ENST00000339394 CDC37Q16543 378 aaPredicted RBP25.7■■□□□ 1.71
SDC3-202ENST00000339394 C17orf99Q6UX52 265 aa25.7■■□□□ 1.71
SDC3-202ENST00000339394 CFHR5Q9BXR6 569 aa25.7■■□□□ 1.71
SDC3-202ENST00000339394 CPA4Q9UI42 421 aa25.7■■□□□ 1.71
SDC3-202ENST00000339394 ZNF214Q9UL59 606 aaPredicted RBP25.7■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms