RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 USP17L18D6R9N7 530 aa21.13■□□□□ 0.97
HMGA1-201ENST00000311487 USP17L22D6RA61 530 aa21.13■□□□□ 0.97
HMGA1-201ENST00000311487 USP17L17D6RBQ6 530 aa21.13■□□□□ 0.97
HMGA1-201ENST00000311487 USP17L19D6RCP7 530 aa21.13■□□□□ 0.97
HMGA1-201ENST00000311487 USP17L20D6RJB6 530 aa21.13■□□□□ 0.97
HMGA1-201ENST00000311487 PFKFB2O60825 505 aa21.13■□□□□ 0.97
HMGA1-201ENST00000311487 CALM1P0DP23 149 aa21.13■□□□□ 0.97
HMGA1-201ENST00000311487 CALM2P0DP24 149 aa21.13■□□□□ 0.97
HMGA1-201ENST00000311487 CALM3P0DP25 149 aa21.13■□□□□ 0.97
HMGA1-201ENST00000311487 IRX3P78415 501 aaPredicted RBP21.13■□□□□ 0.97
HMGA1-201ENST00000311487 USP17L24Q0WX57 530 aa21.13■□□□□ 0.97
HMGA1-201ENST00000311487 NBR1Q14596 966 aa21.13■□□□□ 0.97
HMGA1-201ENST00000311487 ADGRF4Q8IZF3 695 aa21.13■□□□□ 0.97
HMGA1-201ENST00000311487 ATG4CQ96DT6 458 aa21.13■□□□□ 0.97
HMGA1-201ENST00000311487 SYNPO2Q9UMS6 1093 aa21.13■□□□□ 0.97
HMGA1-201ENST00000311487 KIF5BP33176 963 aa21.12■□□□□ 0.97
HMGA1-201ENST00000311487 ASPRV1Q53RT3 343 aa21.12■□□□□ 0.97
HMGA1-201ENST00000311487 PRR12Q9ULL5 1215 aa21.12■□□□□ 0.97
HMGA1-201ENST00000311487 CCDC174Q6PII3 467 aa21.12■□□□□ 0.97
HMGA1-201ENST00000311487 GTF3C6Q969F1 213 aa21.12■□□□□ 0.97
HMGA1-201ENST00000311487 SLF1Q9BQI6 1058 aa21.12■□□□□ 0.97
HMGA1-201ENST00000311487 CPLX1O14810 134 aa21.11■□□□□ 0.97
HMGA1-201ENST00000311487 CTDNEP1O95476 244 aa21.11■□□□□ 0.97
HMGA1-201ENST00000311487 COG2Q14746 738 aa21.11■□□□□ 0.97
HMGA1-201ENST00000311487 GPATCH4Q5T3I0 446 aaKnown RBP21.11■□□□□ 0.97
HMGA1-201ENST00000311487 TMTC3Q6ZXV5 915 aa21.11■□□□□ 0.97
HMGA1-201ENST00000311487 CPXCR1Q8N123 301 aa21.11■□□□□ 0.97
HMGA1-201ENST00000311487 DDX11Q96FC9 970 aa21.11■□□□□ 0.97
HMGA1-201ENST00000311487 PAGR1Q9BTK6 254 aa21.11■□□□□ 0.97
HMGA1-201ENST00000311487 FEM1BQ9UK73 627 aa21.11■□□□□ 0.97
HMGA1-201ENST00000311487 LOC285556D6RIA3 1793 aa21.1■□□□□ 0.97
HMGA1-201ENST00000311487 TESPA1A2RU30 521 aaPredicted RBP21.1■□□□□ 0.97
HMGA1-201ENST00000311487 JAK2O60674 1132 aa21.1■□□□□ 0.97
HMGA1-201ENST00000311487 SREBF2Q12772 1141 aa21.1■□□□□ 0.97
HMGA1-201ENST00000311487 SYDE2Q5VT97 1194 aa21.1■□□□□ 0.97
HMGA1-201ENST00000311487 ANKRD23Q86SG2 305 aa21.1■□□□□ 0.97
HMGA1-201ENST00000311487 HSCBQ8IWL3 235 aa21.1■□□□□ 0.97
HMGA1-201ENST00000311487 SMCR8Q8TEV9 937 aaPredicted RBP21.1■□□□□ 0.97
HMGA1-201ENST00000311487 PIGSQ96S52 555 aa21.1■□□□□ 0.97
HMGA1-201ENST00000311487 R3HDMLQ9H3Y0 253 aa21.1■□□□□ 0.97
HMGA1-201ENST00000311487 JMJD4Q9H9V9 463 aa21.1■□□□□ 0.97
HMGA1-201ENST00000311487 V9GY48 417 aaPredicted RBP21.1■□□□□ 0.97
HMGA1-201ENST00000311487 SPDYE16A6NNV3 312 aaPredicted RBP21.1■□□□□ 0.97
HMGA1-201ENST00000311487 HOXA7P31268 230 aaPredicted RBP21.1■□□□□ 0.97
HMGA1-201ENST00000311487 TM4SF4P48230 202 aa21.1■□□□□ 0.97
HMGA1-201ENST00000311487 PPP1R9AQ9ULJ8 1098 aa21.1■□□□□ 0.97
HMGA1-201ENST00000311487 K7ELQ4 463 aaPredicted RBP21.09■□□□□ 0.97
HMGA1-201ENST00000311487 FOSBP53539 338 aa21.09■□□□□ 0.97
HMGA1-201ENST00000311487 PLS1Q14651 629 aa21.09■□□□□ 0.97
HMGA1-201ENST00000311487 TAF1CQ15572 869 aaPredicted RBP21.09■□□□□ 0.97
HMGA1-201ENST00000311487 NTRK3Q16288 839 aa21.09■□□□□ 0.97
HMGA1-201ENST00000311487 PRPF38AQ8NAV1 312 aaKnown RBP21.09■□□□□ 0.97
HMGA1-201ENST00000311487 CHURC1Q8WUH1 139 aa21.09■□□□□ 0.97
HMGA1-201ENST00000311487 SLC26A6Q9BXS9 759 aa21.09■□□□□ 0.97
HMGA1-201ENST00000311487 TXNRD2Q9NNW7 524 aa21.09■□□□□ 0.97
HMGA1-201ENST00000311487 TRPA1O75762 1119 aa21.08■□□□□ 0.97
HMGA1-201ENST00000311487 TBC1D8O95759 1140 aa21.08■□□□□ 0.97
HMGA1-201ENST00000311487 OSBPP22059 807 aa21.08■□□□□ 0.97
HMGA1-201ENST00000311487 DSG3P32926 999 aa21.08■□□□□ 0.97
HMGA1-201ENST00000311487 HERVK_113P62684 666 aa21.08■□□□□ 0.97
HMGA1-201ENST00000311487 FUT2Q10981 343 aa21.08■□□□□ 0.97
HMGA1-201ENST00000311487 ZSCAN31Q96LW9 406 aaPredicted RBP21.08■□□□□ 0.97
HMGA1-201ENST00000311487 RAVER2Q9HCJ3 691 aaKnown RBP21.08■□□□□ 0.97
HMGA1-201ENST00000311487 RBM28Q9NW13 759 aaKnown RBP21.08■□□□□ 0.97
HMGA1-201ENST00000311487 CPA4Q9UI42 421 aa21.08■□□□□ 0.97
HMGA1-201ENST00000311487 TSKSQ9UJT2 592 aa21.08■□□□□ 0.97
HMGA1-201ENST00000311487 VWA5AO00534 786 aa21.08■□□□□ 0.96
HMGA1-201ENST00000311487 ANKRD13CQ8N6S4 541 aa21.08■□□□□ 0.96
HMGA1-201ENST00000311487 DNAJC5GQ8N7S2 189 aa21.08■□□□□ 0.96
HMGA1-201ENST00000311487 SNX21Q969T3 373 aa21.08■□□□□ 0.96
HMGA1-201ENST00000311487 MAP3K14Q99558 947 aa21.08■□□□□ 0.96
HMGA1-201ENST00000311487 MCM2P49736 904 aa21.07■□□□□ 0.96
HMGA1-201ENST00000311487 INHBEP58166 350 aa21.07■□□□□ 0.96
HMGA1-201ENST00000311487 CRHR2Q13324 411 aa21.07■□□□□ 0.96
HMGA1-201ENST00000311487 CDC37Q16543 378 aaPredicted RBP21.07■□□□□ 0.96
HMGA1-201ENST00000311487 USH1GQ495M9 461 aa21.07■□□□□ 0.96
HMGA1-201ENST00000311487 AGBL1Q96MI9 1066 aa21.07■□□□□ 0.96
HMGA1-201ENST00000311487 AIFM3Q96NN9 605 aa21.07■□□□□ 0.96
HMGA1-201ENST00000311487 SH2B1Q9NRF2 756 aaPredicted RBP21.07■□□□□ 0.96
HMGA1-201ENST00000311487 HOXC10Q9NYD6 342 aa21.07■□□□□ 0.96
HMGA1-201ENST00000311487 BTBD7Q9P203 1132 aa21.07■□□□□ 0.96
HMGA1-201ENST00000311487 CNTNAP5Q8WYK1 1306 aa21.06■□□□□ 0.96
HMGA1-201ENST00000311487 CCDC196A0A1B0GTZ2 297 aa21.06■□□□□ 0.96
HMGA1-201ENST00000311487 PABPC4Q13310 644 aaKnown RBP eCLIP21.06■□□□□ 0.966e-22■■■■□ 23.3
HMGA1-201ENST00000311487 BTNL9Q6UXG8 535 aa21.06■□□□□ 0.96
HMGA1-201ENST00000311487 HOMER2Q9NSB8 354 aa21.06■□□□□ 0.96
HMGA1-201ENST00000311487 RLFQ13129 1914 aa21.06■□□□□ 0.96
HMGA1-201ENST00000311487 PPP1R11O60927 126 aaPredicted RBP21.06■□□□□ 0.96
HMGA1-201ENST00000311487 MAP2K2P36507 400 aa21.06■□□□□ 0.96
HMGA1-201ENST00000311487 TMEM132BQ14DG7 1078 aa21.06■□□□□ 0.96
HMGA1-201ENST00000311487 Q3C1V9 767 aa21.06■□□□□ 0.96
HMGA1-201ENST00000311487 FAM160B2Q86V87 743 aa21.06■□□□□ 0.96
HMGA1-201ENST00000311487 GPKOWQ92917 476 aaPredicted RBP eCLIP21.06■□□□□ 0.963e-8■■■■□ 26
HMGA1-201ENST00000311487 RIOX1Q9H6W3 641 aa21.06■□□□□ 0.96
HMGA1-201ENST00000311487 RBPJLQ9UBG7 517 aa21.06■□□□□ 0.96
HMGA1-201ENST00000311487 CTDP1Q9Y5B0 961 aaPredicted RBP21.06■□□□□ 0.96
HMGA1-201ENST00000311487 SMCHD1A6NHR9 2005 aa21.05■□□□□ 0.96
HMGA1-201ENST00000311487 PTPDC1A2A3K4 754 aa21.05■□□□□ 0.96
HMGA1-201ENST00000311487 GNAQP50148 359 aa21.05■□□□□ 0.96
HMGA1-201ENST00000311487 RCAN1P53805 252 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms