RNA–Protein interactions for RNA: ENST00000301475.1

ZNF558-201, Transcript of zinc finger protein 558, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF558, Length 3,014 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558-201ENST00000301475 CD248Q9HCU0 757 aa12.18□□□□□ -0.46
ZNF558-201ENST00000301475 SMARCAL1Q9NZC9 954 aa12.18□□□□□ -0.46
ZNF558-201ENST00000301475 hCG_1642624A0A1W2PR95 340 aa12.18□□□□□ -0.46
ZNF558-201ENST00000301475 LGALS16A8MUM7 142 aa12.18□□□□□ -0.46
ZNF558-201ENST00000301475 CYP27B1O15528 508 aa12.18□□□□□ -0.46
ZNF558-201ENST00000301475 EPB41P11171 864 aaKnown RBP12.18□□□□□ -0.46
ZNF558-201ENST00000301475 RRP12Q5JTH9 1297 aaKnown RBP12.18□□□□□ -0.46
ZNF558-201ENST00000301475 MMGT1Q8N4V1 131 aa12.18□□□□□ -0.46
ZNF558-201ENST00000301475 ZNF507Q8TCN5 953 aa12.18□□□□□ -0.46
ZNF558-201ENST00000301475 AGPAT5Q9NUQ2 364 aa12.18□□□□□ -0.46
ZNF558-201ENST00000301475 CAPN11Q9UMQ6 739 aa12.18□□□□□ -0.46
ZNF558-201ENST00000301475 TIAM2Q8IVF5 1701 aa12.17□□□□□ -0.46
ZNF558-201ENST00000301475 TCRBV5S4A2TA0A5A2 114 aa12.17□□□□□ -0.46
ZNF558-201ENST00000301475 PES1O00541 588 aaKnown RBP12.17□□□□□ -0.46
ZNF558-201ENST00000301475 MEFVO15553 781 aaPredicted RBP12.17□□□□□ -0.46
ZNF558-201ENST00000301475 PRCPP42785 496 aa12.17□□□□□ -0.46
ZNF558-201ENST00000301475 PMS1P54277 932 aaKnown RBP12.17□□□□□ -0.46
ZNF558-201ENST00000301475 KRT83P78385 493 aa12.17□□□□□ -0.46
ZNF558-201ENST00000301475 UBE3CQ15386 1083 aa12.17□□□□□ -0.46
ZNF558-201ENST00000301475 KCTD16Q68DU8 428 aa12.17□□□□□ -0.46
ZNF558-201ENST00000301475 NUP133Q8WUM0 1156 aa12.17□□□□□ -0.46
ZNF558-201ENST00000301475 PRDM11Q9NQV5 511 aa12.17□□□□□ -0.46
ZNF558-201ENST00000301475 EHD2Q9NZN4 543 aa12.17□□□□□ -0.46
ZNF558-201ENST00000301475 SUFUQ9UMX1 484 aa12.17□□□□□ -0.46
ZNF558-201ENST00000301475 CAPN6Q9Y6Q1 641 aa12.17□□□□□ -0.46
ZNF558-201ENST00000301475 H0YHG0 523 aa12.17□□□□□ -0.46
ZNF558-201ENST00000301475 PRDM1O75626 825 aa12.17□□□□□ -0.46
ZNF558-201ENST00000301475 KRT14P02533 472 aa12.17□□□□□ -0.46
ZNF558-201ENST00000301475 ZNF174Q15697 407 aa12.17□□□□□ -0.46
ZNF558-201ENST00000301475 TTYH3Q9C0H2 523 aa12.17□□□□□ -0.46
ZNF558-201ENST00000301475 SNX12Q9UMY4 172 aa12.17□□□□□ -0.46
ZNF558-201ENST00000301475 RASSF10A6NK89 507 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 ZNF263O14978 683 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 OPA1O60313 960 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 MYCNP04198 464 aaPredicted RBP12.16□□□□□ -0.46
ZNF558-201ENST00000301475 MATR3P43243 847 aaKnown RBP eCLIP12.16□□□□□ -0.46
ZNF558-201ENST00000301475 KLK7P49862 253 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 DDR1Q08345 913 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 IFNL3Q8IZI9 196 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 IFNL2Q8IZJ0 200 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 OTUD6BQ8N6M0 293 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 SPATA4Q8NEY3 305 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 FERMT2Q96AC1 680 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 ZIM3Q96PE6 472 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 A1CFQ9NQ94 594 aaKnown RBP12.16□□□□□ -0.46
ZNF558-201ENST00000301475 PDS5AQ29RF7 1337 aaKnown RBP12.16□□□□□ -0.46
ZNF558-201ENST00000301475 SPATA31A3Q5VYP0 1347 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 BAZ2BQ9UIF8 2168 aaKnown RBP12.16□□□□□ -0.46
ZNF558-201ENST00000301475 A0A1W2PQC6 194 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 EPHB4P54760 987 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 WTAPQ15007 396 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 AKNAD1Q5T1N1 836 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 ZNF658Q5TYW1 1059 aaPredicted RBP12.16□□□□□ -0.46
ZNF558-201ENST00000301475 NAA35Q5VZE5 725 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 HAUS3Q68CZ6 603 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 B4GALNT4Q76KP1 1039 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 KRT26Q7Z3Y9 468 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 FNBP4Q8N3X1 1017 aaPredicted RBP12.16□□□□□ -0.46
ZNF558-201ENST00000301475 NAPBQ9H115 298 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 NHEJ1Q9H9Q4 299 aaPredicted RBP12.16□□□□□ -0.46
ZNF558-201ENST00000301475 DISP2A7MBM2 1401 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 ZEB2O60315 1214 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 KIAA0754O94854 1291 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 TATP17735 454 aaPredicted RBP12.16□□□□□ -0.46
ZNF558-201ENST00000301475 LSP1P33241 339 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 APBA1Q02410 837 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 ALX1Q15699 326 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 PKN1Q16512 942 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 IQCEQ6IPM2 695 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 ZNF654Q8IZM8 581 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 FANCBQ8NB91 859 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 ZKSCAN4Q969J2 545 aaPredicted RBP12.16□□□□□ -0.46
ZNF558-201ENST00000301475 RNPC3Q96LT9 517 aaKnown RBP12.16□□□□□ -0.46
ZNF558-201ENST00000301475 PSMB7Q99436 277 aa12.16□□□□□ -0.46
ZNF558-201ENST00000301475 GTPBP6O43824 516 aaPredicted RBP12.15□□□□□ -0.46
ZNF558-201ENST00000301475 CYLC1P35663 651 aaPredicted RBP12.15□□□□□ -0.46
ZNF558-201ENST00000301475 NAP1L1P55209 391 aaKnown RBP12.15□□□□□ -0.46
ZNF558-201ENST00000301475 GUCY1A3Q02108 690 aa12.15□□□□□ -0.46
ZNF558-201ENST00000301475 PTGDRQ13258 359 aa12.15□□□□□ -0.46
ZNF558-201ENST00000301475 ZNF572Q7Z3I7 529 aaPredicted RBP12.15□□□□□ -0.46
ZNF558-201ENST00000301475 DCAF5Q96JK2 942 aa12.15□□□□□ -0.46
ZNF558-201ENST00000301475 PHF20Q9BVI0 1012 aa12.15□□□□□ -0.46
ZNF558-201ENST00000301475 MBD4O95243 580 aa12.15□□□□□ -0.46
ZNF558-201ENST00000301475 RPN1P04843 607 aaKnown RBP12.15□□□□□ -0.46
ZNF558-201ENST00000301475 CXCR5P32302 372 aa12.15□□□□□ -0.46
ZNF558-201ENST00000301475 KRT2P35908 639 aa12.15□□□□□ -0.46
ZNF558-201ENST00000301475 NNTQ13423 1086 aa12.15□□□□□ -0.46
ZNF558-201ENST00000301475 METTL24Q5JXM2 366 aa12.15□□□□□ -0.46
ZNF558-201ENST00000301475 CCDC70Q6NSX1 233 aa12.15□□□□□ -0.46
ZNF558-201ENST00000301475 EMBQ6PCB8 327 aa12.15□□□□□ -0.46
ZNF558-201ENST00000301475 EEF2KMTQ96G04 330 aa12.15□□□□□ -0.46
ZNF558-201ENST00000301475 RUFY1Q96T51 708 aa12.15□□□□□ -0.46
ZNF558-201ENST00000301475 MLXIPQ9HAP2 919 aa12.15□□□□□ -0.46
ZNF558-201ENST00000301475 STIM2Q9P246 746 aa12.15□□□□□ -0.46
ZNF558-201ENST00000301475 LRWD1Q9UFC0 647 aa12.15□□□□□ -0.46
ZNF558-201ENST00000301475 B4DLN1 442 aa12.14□□□□□ -0.47
ZNF558-201ENST00000301475 PRKAB2O43741 272 aa12.14□□□□□ -0.47
ZNF558-201ENST00000301475 HSF2BPO75031 334 aa12.14□□□□□ -0.47
ZNF558-201ENST00000301475 PLEKP08567 350 aaPredicted RBP12.14□□□□□ -0.47
ZNF558-201ENST00000301475 PHKA1P46020 1223 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms