RNA–Protein interactions for RNA: ENST00000261443.9

CSDE1-201, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-201ENST00000261443 CCDC181Q5TID7 509 aa8.06□□□□□ -1.12
CSDE1-201ENST00000261443 CYB5R4Q7L1T6 521 aa8.06□□□□□ -1.12
CSDE1-201ENST00000261443 XAGE3Q8WTP9 111 aa8.06□□□□□ -1.12
CSDE1-201ENST00000261443 CYFIP2Q96F07 1278 aa8.06□□□□□ -1.12
CSDE1-201ENST00000261443 RSRC1Q96IZ7 334 aaKnown RBP8.06□□□□□ -1.12
CSDE1-201ENST00000261443 EPSTI1Q96J88 318 aa8.06□□□□□ -1.12
CSDE1-201ENST00000261443 DNAJC7Q99615 494 aa8.06□□□□□ -1.12
CSDE1-201ENST00000261443 MYL10Q9BUA6 226 aa8.06□□□□□ -1.12
CSDE1-201ENST00000261443 DENND2AQ9ULE3 1009 aa8.06□□□□□ -1.12
CSDE1-201ENST00000261443 GLI3P10071 1580 aa8.06□□□□□ -1.12
CSDE1-201ENST00000261443 ANKRD18BA2A2Z9 1011 aa8.06□□□□□ -1.12
CSDE1-201ENST00000261443 ZNF233A6NK53 670 aa8.06□□□□□ -1.12
CSDE1-201ENST00000261443 SH2B2O14492 632 aaPredicted RBP8.06□□□□□ -1.12
CSDE1-201ENST00000261443 ITIH3Q06033 890 aa8.06□□□□□ -1.12
CSDE1-201ENST00000261443 IFFO1Q0D2I5 559 aa8.06□□□□□ -1.12
CSDE1-201ENST00000261443 KIF5AQ12840 1032 aa8.06□□□□□ -1.12
CSDE1-201ENST00000261443 NTRK3Q16288 839 aa8.06□□□□□ -1.12
CSDE1-201ENST00000261443 RABL6Q3YEC7 729 aaPredicted RBP8.06□□□□□ -1.12
CSDE1-201ENST00000261443 C1orf141Q5JVX7 400 aa8.06□□□□□ -1.12
CSDE1-201ENST00000261443 C8orf74Q6P047 294 aa8.06□□□□□ -1.12
CSDE1-201ENST00000261443 WDR59Q6PJI9 974 aa8.06□□□□□ -1.12
CSDE1-201ENST00000261443 COPS6Q7L5N1 327 aa8.06□□□□□ -1.12
CSDE1-201ENST00000261443 ARMC2Q8NEN0 867 aa8.06□□□□□ -1.12
CSDE1-201ENST00000261443 WASF1Q92558 559 aa8.06□□□□□ -1.12
CSDE1-201ENST00000261443 SENP2Q9HC62 589 aa8.06□□□□□ -1.12
CSDE1-201ENST00000261443 STRN4Q9NRL3 753 aa8.06□□□□□ -1.12
CSDE1-201ENST00000261443 ZNHIT6Q9NWK9 470 aaKnown RBP8.06□□□□□ -1.12
CSDE1-201ENST00000261443 MYO5AQ9Y4I1 1855 aaKnown RBP8.06□□□□□ -1.12
CSDE1-201ENST00000261443 ADAMTSL3P82987 1691 aa8.06□□□□□ -1.12
CSDE1-201ENST00000261443 DNM1LO00429 736 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 SLC8A3P57103 927 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 GRIK3Q13003 919 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 PAK1Q13153 545 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 EMC10Q5UCC4 262 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 HAUS3Q68CZ6 603 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 LMBR1LQ6UX01 489 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 SH3RF1Q7Z6J0 888 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 IQCKQ8N0W5 287 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 STAMQ92783 540 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 RWDD2AQ9UIY3 292 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 CAPN11Q9UMQ6 739 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 ECM29Q5VYK3 1845 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 A0A087WZG4 1122 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 NR5A1Q13285 461 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 MB21D1Q8N884 522 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 TRIM58Q8NG06 486 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 ZNF483Q8TF39 744 aaPredicted RBP8.05□□□□□ -1.12
CSDE1-201ENST00000261443 ATP6V1G3Q96LB4 118 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 OSBPL7Q9BZF2 842 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 FOXP1Q9H334 677 aaPredicted RBP8.05□□□□□ -1.12
CSDE1-201ENST00000261443 DDX60Q8IY21 1712 aaKnown RBP8.05□□□□□ -1.12
CSDE1-201ENST00000261443 HEG1Q9ULI3 1381 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 HMGB1P1B2RPK0 211 aaPredicted RBP8.05□□□□□ -1.12
CSDE1-201ENST00000261443 ATP2C2O75185 946 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 TACC1O75410 805 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 ZFYP08048 801 aaPredicted RBP8.05□□□□□ -1.12
CSDE1-201ENST00000261443 CXCR5P32302 372 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 HPDP32754 393 aaPredicted RBP8.05□□□□□ -1.12
CSDE1-201ENST00000261443 GUCY1A2P33402 732 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 PAFAH1B1P43034 410 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 CYP27A1Q02318 531 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 ANKRD20A8PQ5CZ79 823 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 PPP4R3AQ6IN85 833 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 ZNF572Q7Z3I7 529 aaPredicted RBP8.05□□□□□ -1.12
CSDE1-201ENST00000261443 IFT20Q8IY31 132 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 NELFBQ8WX92 580 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 PSMB7Q99436 277 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 NHEJ1Q9H9Q4 299 aaPredicted RBP8.05□□□□□ -1.12
CSDE1-201ENST00000261443 SPATS2LQ9NUQ6 558 aaKnown RBP8.05□□□□□ -1.12
CSDE1-201ENST00000261443 AATFQ9NY61 560 aaKnown RBP eCLIP8.05□□□□□ -1.12
CSDE1-201ENST00000261443 SMARCAL1Q9NZC9 954 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 VPS54Q9P1Q0 977 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 RIPOR2Q9Y4F9 1068 aa8.05□□□□□ -1.12
CSDE1-201ENST00000261443 STRCP1A6NGW2 1772 aa8.04□□□□□ -1.12
CSDE1-201ENST00000261443 GMNCA6NCL1 334 aa8.04□□□□□ -1.12
CSDE1-201ENST00000261443 SRRM3A6NNA2 597 aaPredicted RBP8.04□□□□□ -1.12
CSDE1-201ENST00000261443 OPLAHO14841 1288 aa8.04□□□□□ -1.12
CSDE1-201ENST00000261443 FMNL1O95466 1100 aaPredicted RBP8.04□□□□□ -1.12
CSDE1-201ENST00000261443 TNFRSF8P28908 595 aa8.04□□□□□ -1.12
CSDE1-201ENST00000261443 CCDC96Q2M329 555 aa8.04□□□□□ -1.12
CSDE1-201ENST00000261443 SPRED3Q2MJR0 410 aa8.04□□□□□ -1.12
CSDE1-201ENST00000261443 GLE1Q53GS7 698 aaKnown RBP8.04□□□□□ -1.12
CSDE1-201ENST00000261443 ANKRD13DQ6ZTN6 518 aa8.04□□□□□ -1.12
CSDE1-201ENST00000261443 ATG9AQ7Z3C6 839 aa8.04□□□□□ -1.12
CSDE1-201ENST00000261443 RASSF8Q8NHQ8 419 aa8.04□□□□□ -1.12
CSDE1-201ENST00000261443 SMCR8Q8TEV9 937 aaPredicted RBP8.04□□□□□ -1.12
CSDE1-201ENST00000261443 IFT81Q8WYA0 676 aa8.04□□□□□ -1.12
CSDE1-201ENST00000261443 SYMPKQ92797 1274 aaKnown RBP8.04□□□□□ -1.12
CSDE1-201ENST00000261443 TBC1D31Q96DN5 1066 aa8.04□□□□□ -1.12
CSDE1-201ENST00000261443 PURBQ96QR8 312 aaKnown RBP8.04□□□□□ -1.12
CSDE1-201ENST00000261443 TSGA10Q9BZW7 698 aa8.04□□□□□ -1.12
CSDE1-201ENST00000261443 PUS7LQ9H0K6 701 aaKnown RBP8.04□□□□□ -1.12
CSDE1-201ENST00000261443 BLZF1Q9H2G9 400 aa8.04□□□□□ -1.12
CSDE1-201ENST00000261443 CABP5Q9NP86 173 aa8.04□□□□□ -1.12
CSDE1-201ENST00000261443 FAM217BQ9NTX9 383 aaPredicted RBP8.04□□□□□ -1.12
CSDE1-201ENST00000261443 NFU1Q9UMS0 254 aa8.04□□□□□ -1.12
CSDE1-201ENST00000261443 ALS2Q96Q42 1657 aa8.04□□□□□ -1.12
CSDE1-201ENST00000261443 KLHL33A6NCF5 533 aa8.04□□□□□ -1.12
CSDE1-201ENST00000261443 B4E1Z4 1266 aa8.04□□□□□ -1.12
CSDE1-201ENST00000261443 PARP1P09874 1014 aaKnown RBP8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms