RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 RSBN1LQ6PCB5 846 aaPredicted RBP15.27■□□□□ 0.04
LDLR-201ENST00000252444 OSBPL5Q9H0X9 879 aaPredicted RBP15.27■□□□□ 0.04
LDLR-201ENST00000252444 GTPBP6O43824 516 aaPredicted RBP15.27■□□□□ 0.03
LDLR-201ENST00000252444 CASQ1P31415 396 aa15.27■□□□□ 0.03
LDLR-201ENST00000252444 ZNF445P59923 1031 aa15.27■□□□□ 0.03
LDLR-201ENST00000252444 NDC80O14777 642 aa15.27■□□□□ 0.03
LDLR-201ENST00000252444 CFBP00751 764 aa15.27■□□□□ 0.03
LDLR-201ENST00000252444 DYNLL1P63167 89 aaKnown RBP15.27■□□□□ 0.03
LDLR-201ENST00000252444 CDC37L1Q7L3B6 337 aa15.27■□□□□ 0.03
LDLR-201ENST00000252444 DDX25Q9UHL0 483 aaKnown RBP15.27■□□□□ 0.03
LDLR-201ENST00000252444 PCDHA1Q9Y5I3 950 aa15.27■□□□□ 0.03
LDLR-201ENST00000252444 TNNT3P45378 269 aaPredicted RBP15.26■□□□□ 0.03
LDLR-201ENST00000252444 TMC6Q7Z403 805 aa15.26■□□□□ 0.03
LDLR-201ENST00000252444 SEC62Q99442 399 aaKnown RBP15.26■□□□□ 0.03
LDLR-201ENST00000252444 ANAPC4Q9UJX5 808 aa15.26■□□□□ 0.03
LDLR-201ENST00000252444 NEBLO76041 1014 aa15.26■□□□□ 0.03
LDLR-201ENST00000252444 GYS1P13807 737 aa15.26■□□□□ 0.03
LDLR-201ENST00000252444 PAK1Q13153 545 aa15.26■□□□□ 0.03
LDLR-201ENST00000252444 WDR44Q5JSH3 913 aa15.26■□□□□ 0.03
LDLR-201ENST00000252444 NSMFQ6X4W1 530 aa15.26■□□□□ 0.03
LDLR-201ENST00000252444 ZBTB8OSQ8IWT0 167 aa15.26■□□□□ 0.03
LDLR-201ENST00000252444 CCDC51Q96ER9 411 aa15.26■□□□□ 0.03
LDLR-201ENST00000252444 SRRTQ9BXP5 876 aaKnown RBP15.26■□□□□ 0.03
LDLR-201ENST00000252444 RXRAP19793 462 aa15.26■□□□□ 0.03
LDLR-201ENST00000252444 NCAPH2Q6IBW4 605 aa15.26■□□□□ 0.03
LDLR-201ENST00000252444 ZNF589Q86UQ0 364 aaPredicted RBP15.26■□□□□ 0.03
LDLR-201ENST00000252444 PNMA8AQ86V59 439 aaPredicted RBP15.26■□□□□ 0.03
LDLR-201ENST00000252444 NSUN7Q8NE18 718 aaKnown RBP15.26■□□□□ 0.03
LDLR-201ENST00000252444 DCP1AQ9NPI6 582 aaPredicted RBP15.26■□□□□ 0.03
LDLR-201ENST00000252444 SYNPO2Q9UMS6 1093 aa15.26■□□□□ 0.03
LDLR-201ENST00000252444 MMP1P03956 469 aa15.26■□□□□ 0.03
LDLR-201ENST00000252444 TUBBP07437 444 aa15.26■□□□□ 0.03
LDLR-201ENST00000252444 POSTNQ15063 836 aa15.26■□□□□ 0.03
LDLR-201ENST00000252444 TMEM87AQ8NBN3 555 aa15.26■□□□□ 0.03
LDLR-201ENST00000252444 SETD1AO15047 1707 aaKnown RBP15.26■□□□□ 0.03
LDLR-201ENST00000252444 P4HA1P13674 534 aa15.25■□□□□ 0.03
LDLR-201ENST00000252444 KCNV1Q6PIU1 500 aa15.25■□□□□ 0.03
LDLR-201ENST00000252444 TMTC3Q6ZXV5 915 aa15.25■□□□□ 0.03
LDLR-201ENST00000252444 ANTXR1Q9H6X2 564 aa15.25■□□□□ 0.03
LDLR-201ENST00000252444 MTMR6Q9Y217 621 aa15.25■□□□□ 0.03
LDLR-201ENST00000252444 NCOA5Q9HCD5 579 aaKnown RBP15.25■□□□□ 0.03
LDLR-201ENST00000252444 METTL14Q9HCE5 456 aaKnown RBP15.25■□□□□ 0.03
LDLR-201ENST00000252444 COL4A3BPQ9Y5P4 624 aa15.25■□□□□ 0.03
LDLR-201ENST00000252444 ADCY5O95622 1261 aa15.25■□□□□ 0.03
LDLR-201ENST00000252444 CDC37Q16543 378 aaPredicted RBP15.25■□□□□ 0.03
LDLR-201ENST00000252444 CCDC84Q86UT8 332 aaPredicted RBP15.25■□□□□ 0.03
LDLR-201ENST00000252444 NSUN4Q96CB9 384 aaKnown RBP15.25■□□□□ 0.03
LDLR-201ENST00000252444 PAXBP1Q9Y5B6 917 aa15.25■□□□□ 0.03
LDLR-201ENST00000252444 SCP2P22307 547 aa15.25■□□□□ 0.03
LDLR-201ENST00000252444 SCRN1Q12765 414 aa15.25■□□□□ 0.03
LDLR-201ENST00000252444 MIS18BP1Q6P0N0 1132 aa15.25■□□□□ 0.03
LDLR-201ENST00000252444 HOXA10P31260 410 aaPredicted RBP15.24■□□□□ 0.03
LDLR-201ENST00000252444 PSMD2Q13200 908 aa15.24■□□□□ 0.03
LDLR-201ENST00000252444 SLF1Q9BQI6 1058 aa15.24■□□□□ 0.03
LDLR-201ENST00000252444 VPS54Q9P1Q0 977 aa15.24■□□□□ 0.03
LDLR-201ENST00000252444 NYAP2Q9P242 653 aa15.24■□□□□ 0.03
LDLR-201ENST00000252444 MYCLP12524 364 aaPredicted RBP15.24■□□□□ 0.03
LDLR-201ENST00000252444 TXKP42681 527 aa15.24■□□□□ 0.03
LDLR-201ENST00000252444 MB21D2Q8IYB1 491 aaPredicted RBP15.24■□□□□ 0.03
LDLR-201ENST00000252444 ANKRD35Q8N283 1001 aa15.24■□□□□ 0.03
LDLR-201ENST00000252444 SH3RF3Q8TEJ3 882 aaPredicted RBP15.24■□□□□ 0.03
LDLR-201ENST00000252444 FAM167AQ96KS9 214 aa15.24■□□□□ 0.03
LDLR-201ENST00000252444 RAD17O75943 681 aa15.24■□□□□ 0.03
LDLR-201ENST00000252444 TMOD1P28289 359 aa15.24■□□□□ 0.03
LDLR-201ENST00000252444 JAK3P52333 1124 aa15.24■□□□□ 0.03
LDLR-201ENST00000252444 FAM151AQ8WW52 585 aa15.24■□□□□ 0.03
LDLR-201ENST00000252444 SLC39A14Q15043 492 aa15.24■□□□□ 0.03
LDLR-201ENST00000252444 PLA2G4DQ86XP0 818 aa15.24■□□□□ 0.03
LDLR-201ENST00000252444 SYNRGQ9UMZ2 1314 aa15.24■□□□□ 0.03
LDLR-201ENST00000252444 ARHGEF37A1IGU5 675 aa15.24■□□□□ 0.03
LDLR-201ENST00000252444 ZNF202O95125 648 aa15.24■□□□□ 0.03
LDLR-201ENST00000252444 ALAS1P13196 640 aa15.24■□□□□ 0.03
LDLR-201ENST00000252444 CEP128Q6ZU80 1094 aa15.24■□□□□ 0.03
LDLR-201ENST00000252444 RSPH3Q86UC2 560 aa15.24■□□□□ 0.03
LDLR-201ENST00000252444 LRRC47Q8N1G4 583 aaKnown RBP15.24■□□□□ 0.03
LDLR-201ENST00000252444 MB21D1Q8N884 522 aa15.24■□□□□ 0.03
LDLR-201ENST00000252444 PHKBQ93100 1093 aa15.24■□□□□ 0.03
LDLR-201ENST00000252444 GDPD2Q9HCC8 539 aa15.24■□□□□ 0.03
LDLR-201ENST00000252444 PCDHA12Q9UN75 941 aa15.24■□□□□ 0.03
LDLR-201ENST00000252444 NDUFB9Q9Y6M9 179 aa15.24■□□□□ 0.03
LDLR-201ENST00000252444 AOC3Q16853 763 aa15.23■□□□□ 0.03
LDLR-201ENST00000252444 KIF4BQ2VIQ3 1234 aa15.23■□□□□ 0.03
LDLR-201ENST00000252444 SLC10A4Q96EP9 437 aa15.23■□□□□ 0.03
LDLR-201ENST00000252444 FNBP1Q96RU3 617 aa15.23■□□□□ 0.03
LDLR-201ENST00000252444 ZNF408Q9H9D4 720 aa15.23■□□□□ 0.03
LDLR-201ENST00000252444 MRIQ9BWK5 157 aa15.23■□□□□ 0.03
LDLR-201ENST00000252444 GOLGA6L10A0A0M3HER8 536 aa15.23■□□□□ 0.03
LDLR-201ENST00000252444 SLC8A3P57103 927 aa15.23■□□□□ 0.03
LDLR-201ENST00000252444 ZNF579Q8NAF0 562 aaKnown RBP15.23■□□□□ 0.03
LDLR-201ENST00000252444 SELENOOQ9BVL4 669 aa15.23■□□□□ 0.03
LDLR-201ENST00000252444 ESPNB1AK53 854 aa15.23■□□□□ 0.03
LDLR-201ENST00000252444 CPA1P15085 419 aa15.23■□□□□ 0.03
LDLR-201ENST00000252444 TCHPQ9BT92 498 aa15.23■□□□□ 0.03
LDLR-201ENST00000252444 MIS12Q9H081 205 aa15.23■□□□□ 0.03
LDLR-201ENST00000252444 HACL1Q9UJ83 578 aa15.23■□□□□ 0.03
LDLR-201ENST00000252444 BIN1O00499 593 aa15.22■□□□□ 0.03
LDLR-201ENST00000252444 C12orf60Q5U649 245 aa15.22■□□□□ 0.03
LDLR-201ENST00000252444 AOPEPQ8N6M6 819 aa15.22■□□□□ 0.03
LDLR-201ENST00000252444 SPZ1Q9BXG8 430 aa15.22■□□□□ 0.03
LDLR-201ENST00000252444 EHD4Q9H223 541 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms