RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	MRPL9	P31334	269 aa		5.11	□□□□□ -1.59
CAF16	YFL028C	RPF2	P36160	344 aa	Known RBP	5.11	□□□□□ -1.59
CAF16	YFL028C	YMC2	P38087	329 aa		5.11	□□□□□ -1.59
CAF16	YFL028C	RTS1	P38903	757 aa		5.11	□□□□□ -1.59
CAF16	YFL028C	GIP4	P39732	760 aa		5.11	□□□□□ -1.59
CAF16	YFL028C	JHD1	P40034	492 aa		5.11	□□□□□ -1.59
CAF16	YFL028C	SLZ1	P40167	298 aa		5.11	□□□□□ -1.59
CAF16	YFL028C	BUD27	P43573	796 aa	Known RBP RIP-Chip data	5.11	□□□□□ -1.59	not detected
CAF16	YFL028C	AAD10	P47182	288 aa		5.11	□□□□□ -1.59
CAF16	YFL028C	YRB30	P53107	440 aa	Predicted RBP	5.11	□□□□□ -1.59
CAF16	YFL028C	NRD1	P53617	575 aa	Known RBP RIP-Chip data	5.11	□□□□□ -1.59	not detected
CAF16	YFL028C	YNR061C	P53747	219 aa		5.11	□□□□□ -1.59
CAF16	YFL028C	MUB1	Q03162	620 aa		5.11	□□□□□ -1.59
CAF16	YFL028C	MRI1	Q06489	411 aa	Known RBP	5.11	□□□□□ -1.59
CAF16	YFL028C	CIR2	Q08822	631 aa		5.11	□□□□□ -1.59
CAF16	YFL028C	GCN4	P03069	281 aa		5.1	□□□□□ -1.59
CAF16	YFL028C	CPA2	P03965	1118 aa	Known RBP	5.1	□□□□□ -1.59
CAF16	YFL028C	CHO2	P05374	869 aa	Known RBP	5.1	□□□□□ -1.59
CAF16	YFL028C	ERC1	P38767	581 aa		5.1	□□□□□ -1.59
CAF16	YFL028C	LAS21	P40367	830 aa		5.1	□□□□□ -1.59
CAF16	YFL028C	DJP1	P40564	432 aa		5.1	□□□□□ -1.59
CAF16	YFL028C	IME4	P41833	600 aa		5.1	□□□□□ -1.59
CAF16	YFL028C	IRC6	P43615	237 aa		5.1	□□□□□ -1.59
CAF16	YFL028C	SGM1	P47166	707 aa		5.1	□□□□□ -1.59
CAF16	YFL028C	PIL1	P53252	339 aa	Known RBP	5.1	□□□□□ -1.59
CAF16	YFL028C	COG2	P53271	262 aa		5.1	□□□□□ -1.59
CAF16	YFL028C	MDG1	P53885	366 aa		5.1	□□□□□ -1.59
CAF16	YFL028C	TIM44	Q01852	431 aa		5.1	□□□□□ -1.59
CAF16	YFL028C	RPT6	Q01939	405 aa	Known RBP	5.1	□□□□□ -1.59
CAF16	YFL028C	NGL3	Q03210	505 aa		5.1	□□□□□ -1.59
CAF16	YFL028C	YDR109C	Q04585	715 aa		5.1	□□□□□ -1.59
CAF16	YFL028C	GFD1	Q04839	188 aa	Known RBP	5.1	□□□□□ -1.59
CAF16	YFL028C	YLR287C	Q05881	355 aa		5.1	□□□□□ -1.59
CAF16	YFL028C	CDC45	Q08032	650 aa		5.1	□□□□□ -1.59
CAF16	YFL028C	PCL8	Q08966	492 aa		5.1	□□□□□ -1.59
CAF16	YFL028C	STE12	P13574	688 aa		5.09	□□□□□ -1.59
CAF16	YFL028C	FUR1	P18562	216 aa	Known RBP	5.09	□□□□□ -1.59
CAF16	YFL028C	KGD2	P19262	463 aa	Predicted RBP	5.09	□□□□□ -1.59
CAF16	YFL028C	KIN3	P22209	435 aa		5.09	□□□□□ -1.59
CAF16	YFL028C	PEP3	P27801	918 aa		5.09	□□□□□ -1.59
CAF16	YFL028C	SRB5	P32585	307 aa		5.09	□□□□□ -1.59
CAF16	YFL028C	NFU1	P32860	256 aa		5.09	□□□□□ -1.59
CAF16	YFL028C	PRS1	P32895	427 aa	Known RBP	5.09	□□□□□ -1.59
CAF16	YFL028C	SAP1	P39955	897 aa	Known RBP	5.09	□□□□□ -1.59
CAF16	YFL028C	MRX6	P48564	524 aa		5.09	□□□□□ -1.59
CAF16	YFL028C	INN1	P53901	409 aa		5.09	□□□□□ -1.59
CAF16	YFL028C	ZDS2	P54786	942 aa		5.09	□□□□□ -1.59
CAF16	YFL028C	AAT1	Q01802	451 aa		5.09	□□□□□ -1.59
CAF16	YFL028C	WAR1	Q03631	944 aa		5.09	□□□□□ -1.59
CAF16	YFL028C	TAF11	Q04226	346 aa		5.09	□□□□□ -1.59
CAF16	YFL028C	CRN1	Q06440	651 aa		5.09	□□□□□ -1.59
CAF16	YFL028C	LCB4	Q12246	624 aa		5.09	□□□□□ -1.59
CAF16	YFL028C	TPK2	P06245	380 aa		5.08	□□□□□ -1.6
CAF16	YFL028C	CDC15	P27636	974 aa		5.08	□□□□□ -1.6
CAF16	YFL028C	LAC1	P28496	418 aa		5.08	□□□□□ -1.6
CAF16	YFL028C	MAL33	P38157	468 aa		5.08	□□□□□ -1.6
CAF16	YFL028C	SEC24	P40482	926 aa	Known RBP	5.08	□□□□□ -1.6
CAF16	YFL028C	ARF3	P40994	183 aa	RIP-Chip data	5.08	□□□□□ -1.6	not detected
CAF16	YFL028C	YFR016C	P43597	1233 aa	Known RBP	5.08	□□□□□ -1.6
CAF16	YFL028C	ASN1	P49089	572 aa	Known RBP	5.08	□□□□□ -1.6
CAF16	YFL028C	VPS75	P53853	264 aa		5.08	□□□□□ -1.6
CAF16	YFL028C	SYF1	Q04048	859 aa	Predicted RBP	5.08	□□□□□ -1.6
CAF16	YFL028C	PLM2	Q04383	521 aa		5.08	□□□□□ -1.6
CAF16	YFL028C	SKG3	Q06315	1026 aa		5.08	□□□□□ -1.6
CAF16	YFL028C	SWA2	Q06677	668 aa		5.08	□□□□□ -1.6
CAF16	YFL028C	CTI6	Q08923	506 aa		5.08	□□□□□ -1.6
CAF16	YFL028C	RRG1	Q12167	365 aa	Predicted RBP	5.08	□□□□□ -1.6
CAF16	YFL028C	TAF3	Q12297	353 aa		5.08	□□□□□ -1.6
CAF16	YFL028C	AHA1	Q12449	350 aa	Known RBP	5.08	□□□□□ -1.6
CAF16	YFL028C	NOP58	Q12499	511 aa	Known RBP	5.08	□□□□□ -1.6
CAF16	YFL028C	Q0010	Q9ZZX9	128 aa		5.08	□□□□□ -1.6
CAF16	YFL028C	SWI1	P09547	1314 aa		5.07	□□□□□ -1.6
CAF16	YFL028C	YBR085C-A	O43137	85 aa		5.07	□□□□□ -1.6
CAF16	YFL028C	ARG3	P05150	338 aa		5.07	□□□□□ -1.6
CAF16	YFL028C	KAR3	P17119	729 aa		5.07	□□□□□ -1.6
CAF16	YFL028C	CDC43	P18898	376 aa		5.07	□□□□□ -1.6
CAF16	YFL028C	RRP43	P25359	394 aa	Predicted RBP	5.07	□□□□□ -1.6
CAF16	YFL028C	POL4	P25615	582 aa		5.07	□□□□□ -1.6
CAF16	YFL028C	HES1	P35843	434 aa		5.07	□□□□□ -1.6
CAF16	YFL028C	FLC2	P39719	783 aa		5.07	□□□□□ -1.6
CAF16	YFL028C	TPA1	P40032	644 aa	Known RBP	5.07	□□□□□ -1.6
CAF16	YFL028C	SDS3	P40505	327 aa		5.07	□□□□□ -1.6
CAF16	YFL028C	CIR1	P42940	261 aa		5.07	□□□□□ -1.6
CAF16	YFL028C	RMD8	P43620	662 aa		5.07	□□□□□ -1.6
CAF16	YFL028C	LCL3	P53153	274 aa		5.07	□□□□□ -1.6
CAF16	YFL028C	YGL082W	P53155	381 aa		5.07	□□□□□ -1.6
CAF16	YFL028C	CPR8	P53728	308 aa		5.07	□□□□□ -1.6
CAF16	YFL028C	YAT1	P80235	687 aa		5.07	□□□□□ -1.6
CAF16	YFL028C	RAD33	Q04231	177 aa		5.07	□□□□□ -1.6
CAF16	YFL028C	TCO89	Q08921	799 aa		5.07	□□□□□ -1.6
CAF16	YFL028C	RCN2	Q12044	265 aa		5.07	□□□□□ -1.6
CAF16	YFL028C	PUS9	Q12069	462 aa		5.07	□□□□□ -1.6
CAF16	YFL028C	CET1	O13297	549 aa	Predicted RBP	5.06	□□□□□ -1.6
CAF16	YFL028C	MET17	P06106	444 aa		5.06	□□□□□ -1.6
CAF16	YFL028C	RED1	P14291	827 aa		5.06	□□□□□ -1.6
CAF16	YFL028C	YSP3	P25036	478 aa		5.06	□□□□□ -1.6
CAF16	YFL028C	DMC1	P25453	334 aa		5.06	□□□□□ -1.6
CAF16	YFL028C	CHS7	P38843	316 aa		5.06	□□□□□ -1.6
CAF16	YFL028C	YFL015C	P43578	164 aa		5.06	□□□□□ -1.6
CAF16	YFL028C	MSY1	P48527	492 aa		5.06	□□□□□ -1.6

Retrieved 100 of 5,963 RNA–protein pairs in 17.8 ms