RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 RAPGEF1Q13905 1077 aa3.7□□□□□ -1.82
VIM-210ENST00000637053 NFE2L2Q16236 605 aa3.7□□□□□ -1.82
VIM-210ENST00000637053 HP1BP3Q5SSJ5 553 aaPredicted RBP3.7□□□□□ -1.82
VIM-210ENST00000637053 CC2D1BQ5T0F9 858 aaKnown RBP3.7□□□□□ -1.82
VIM-210ENST00000637053 NBPF6Q5VWK0 638 aa3.7□□□□□ -1.82
VIM-210ENST00000637053 DBX2Q6ZNG2 339 aa3.7□□□□□ -1.82
VIM-210ENST00000637053 CYFIP1Q7L576 1253 aa3.7□□□□□ -1.82
VIM-210ENST00000637053 FERMT3Q86UX7 667 aa3.7□□□□□ -1.82
VIM-210ENST00000637053 NBPF5PQ86XG9 351 aaPredicted RBP3.7□□□□□ -1.82
VIM-210ENST00000637053 CCNJLQ8IV13 435 aa3.7□□□□□ -1.82
VIM-210ENST00000637053 SPACA3Q8IXA5 215 aa3.7□□□□□ -1.82
VIM-210ENST00000637053 RAVER1Q8IY67 606 aaKnown RBP3.7□□□□□ -1.82
VIM-210ENST00000637053 SMYD4Q8IYR2 804 aaPredicted RBP3.7□□□□□ -1.82
VIM-210ENST00000637053 NGDNQ8NEJ9 315 aaKnown RBP3.7□□□□□ -1.82
VIM-210ENST00000637053 TSR2Q969E8 191 aaKnown RBP3.7□□□□□ -1.82
VIM-210ENST00000637053 NBPF4Q96M43 638 aa3.7□□□□□ -1.82
VIM-210ENST00000637053 ASB16Q96NS5 453 aa3.7□□□□□ -1.82
VIM-210ENST00000637053 TCF12Q99081 682 aa3.7□□□□□ -1.82
VIM-210ENST00000637053 CORO1BQ9BR76 489 aa3.7□□□□□ -1.82
VIM-210ENST00000637053 RETREG1Q9H6L5 497 aa3.7□□□□□ -1.82
VIM-210ENST00000637053 SYNRGQ9UMZ2 1314 aa3.7□□□□□ -1.82
VIM-210ENST00000637053 TMEM238LA0A1B0GVL6 79 aa3.69□□□□□ -1.82
VIM-210ENST00000637053 NPHP1O15259 732 aa3.69□□□□□ -1.82
VIM-210ENST00000637053 CAND2O75155 1236 aa3.69□□□□□ -1.82
VIM-210ENST00000637053 POLR3DP05423 398 aaPredicted RBP3.69□□□□□ -1.82
VIM-210ENST00000637053 PEX19P40855 299 aa3.69□□□□□ -1.82
VIM-210ENST00000637053 LINC00310P59036 64 aa3.69□□□□□ -1.82
VIM-210ENST00000637053 FANCCQ00597 558 aa3.69□□□□□ -1.82
VIM-210ENST00000637053 NFKB2Q00653 900 aa3.69□□□□□ -1.82
VIM-210ENST00000637053 ARID5AQ03989 594 aa3.69□□□□□ -1.82
VIM-210ENST00000637053 SIM2Q14190 667 aaPredicted RBP3.69□□□□□ -1.82
VIM-210ENST00000637053 PDE3AQ14432 1141 aa3.69□□□□□ -1.82
VIM-210ENST00000637053 BRD3Q15059 726 aa3.69□□□□□ -1.82
VIM-210ENST00000637053 CDC37Q16543 378 aaPredicted RBP3.69□□□□□ -1.82
VIM-210ENST00000637053 NKPD1Q17RQ9 610 aa3.69□□□□□ -1.82
VIM-210ENST00000637053 CCDC92Q53HC0 331 aaPredicted RBP3.69□□□□□ -1.82
VIM-210ENST00000637053 EAPPQ56P03 285 aaPredicted RBP3.69□□□□□ -1.82
VIM-210ENST00000637053 PLEKHG4Q58EX7 1191 aa3.69□□□□□ -1.82
VIM-210ENST00000637053 GJC2Q5T442 439 aaPredicted RBP3.69□□□□□ -1.82
VIM-210ENST00000637053 ARHGAP27Q6ZUM4 889 aa3.69□□□□□ -1.82
VIM-210ENST00000637053 KRT77Q7Z794 578 aa3.69□□□□□ -1.82
VIM-210ENST00000637053 WDR75Q8IWA0 830 aaKnown RBP3.69□□□□□ -1.82
VIM-210ENST00000637053 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.69□□□□□ -1.82
VIM-210ENST00000637053 CHPFQ8IZ52 775 aa3.69□□□□□ -1.82
VIM-210ENST00000637053 ZNF513Q8N8E2 541 aaPredicted RBP3.69□□□□□ -1.82
VIM-210ENST00000637053 TMEM87AQ8NBN3 555 aa3.69□□□□□ -1.82
VIM-210ENST00000637053 LSM14AQ8ND56 463 aaKnown RBP3.69□□□□□ -1.82
VIM-210ENST00000637053 ASB11Q8WXH4 323 aa3.69□□□□□ -1.82
VIM-210ENST00000637053 RNF34Q969K3 372 aa3.69□□□□□ -1.82
VIM-210ENST00000637053 ZNF830Q96NB3 372 aaPredicted RBP3.69□□□□□ -1.82
VIM-210ENST00000637053 SEZ6LQ9BYH1 1024 aa3.69□□□□□ -1.82
VIM-210ENST00000637053 AS3MTQ9HBK9 375 aa3.69□□□□□ -1.82
VIM-210ENST00000637053 ARNT2Q9HBZ2 717 aa3.69□□□□□ -1.82
VIM-210ENST00000637053 CHST12Q9NRB3 414 aa3.69□□□□□ -1.82
VIM-210ENST00000637053 PCDHGC5Q9Y5F6 944 aa3.69□□□□□ -1.82
VIM-210ENST00000637053 CCDC163A0A0D9SF12 145 aa3.68□□□□□ -1.82
VIM-210ENST00000637053 DYTNA2CJ06 578 aa3.68□□□□□ -1.82
VIM-210ENST00000637053 TBX3O15119 743 aa3.68□□□□□ -1.82
VIM-210ENST00000637053 NUAK1O60285 661 aa3.68□□□□□ -1.82
VIM-210ENST00000637053 ZNF862O60290 1169 aa3.68□□□□□ -1.82
VIM-210ENST00000637053 RNASEH2AO75792 299 aaKnown RBP3.68□□□□□ -1.82
VIM-210ENST00000637053 BPNT1O95861 308 aa3.68□□□□□ -1.82
VIM-210ENST00000637053 B3GALT4O96024 378 aa3.68□□□□□ -1.82
VIM-210ENST00000637053 HCLS1P14317 486 aaPredicted RBP3.68□□□□□ -1.82
VIM-210ENST00000637053 RRM1P23921 792 aa3.68□□□□□ -1.82
VIM-210ENST00000637053 MAPK1P28482 360 aa3.68□□□□□ -1.82
VIM-210ENST00000637053 MZF1P28698 734 aaPredicted RBP3.68□□□□□ -1.82
VIM-210ENST00000637053 ATICP31939 592 aa3.68□□□□□ -1.82
VIM-210ENST00000637053 TRAPPC10P48553 1259 aa3.68□□□□□ -1.82
VIM-210ENST00000637053 HSP90AA2PQ14568 343 aaPredicted RBP3.68□□□□□ -1.82
VIM-210ENST00000637053 TTLL4Q14679 1199 aa3.68□□□□□ -1.82
VIM-210ENST00000637053 LONRF1Q17RB8 773 aa3.68□□□□□ -1.82
VIM-210ENST00000637053 TMEM95Q3KNT9 176 aa3.68□□□□□ -1.82
VIM-210ENST00000637053 RGL3Q3MIN7 710 aa3.68□□□□□ -1.82
VIM-210ENST00000637053 ALDH1L2Q3SY69 923 aa3.68□□□□□ -1.82
VIM-210ENST00000637053 USP48Q86UV5 1035 aa3.68□□□□□ -1.82
VIM-210ENST00000637053 TOP6BLQ8N6T0 577 aa3.68□□□□□ -1.82
VIM-210ENST00000637053 CCDC89Q8N998 374 aa3.68□□□□□ -1.82
VIM-210ENST00000637053 TEX19Q8NA77 164 aa3.68□□□□□ -1.82
VIM-210ENST00000637053 RNPC3Q96LT9 517 aaKnown RBP3.68□□□□□ -1.82
VIM-210ENST00000637053 ALDH8A1Q9H2A2 487 aaPredicted RBP3.68□□□□□ -1.82
VIM-210ENST00000637053 CCDC86Q9H6F5 360 aaKnown RBP3.68□□□□□ -1.82
VIM-210ENST00000637053 PIDD1Q9HB75 910 aa3.68□□□□□ -1.82
VIM-210ENST00000637053 ZFYVE1Q9HBF4 777 aa3.68□□□□□ -1.82
VIM-210ENST00000637053 DCP1AQ9NPI6 582 aaPredicted RBP3.68□□□□□ -1.82
VIM-210ENST00000637053 METTL5Q9NRN9 209 aaKnown RBP3.68□□□□□ -1.82
VIM-210ENST00000637053 ISY1Q9ULR0 285 aaKnown RBP3.68□□□□□ -1.82
VIM-210ENST00000637053 DIS3Q9Y2L1 958 aaKnown RBP3.68□□□□□ -1.82
VIM-210ENST00000637053 A0A1W2PP55 124 aa3.67□□□□□ -1.82
VIM-210ENST00000637053 TCAF2A6NFQ2 919 aa3.67□□□□□ -1.82
VIM-210ENST00000637053 HMMRO75330 724 aa3.67□□□□□ -1.82
VIM-210ENST00000637053 KRT18P05783 430 aaKnown RBP3.67□□□□□ -1.82
VIM-210ENST00000637053 HSP90AB1P08238 724 aaKnown RBP3.67□□□□□ -1.82
VIM-210ENST00000637053 GLDCP23378 1020 aa3.67□□□□□ -1.82
VIM-210ENST00000637053 FLT3P36888 993 aa3.67□□□□□ -1.82
VIM-210ENST00000637053 SSR1P43307 286 aaKnown RBP3.67□□□□□ -1.82
VIM-210ENST00000637053 PSMC1P62191 440 aaKnown RBP3.67□□□□□ -1.82
VIM-210ENST00000637053 PSMD2Q13200 908 aa3.67□□□□□ -1.82
VIM-210ENST00000637053 SKOR2Q2VWA4 1001 aaPredicted RBP3.67□□□□□ -1.82
VIM-210ENST00000637053 INO80DQ53TQ3 878 aaPredicted RBP3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms