RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 CEP120Q8N960 986 aa13.16□□□□□ -0.3
CLN6-217ENST00000636964 MRVI1Q9Y6F6 885 aa13.16□□□□□ -0.3
CLN6-217ENST00000636964 MYH6P13533 1939 aa13.16□□□□□ -0.3
CLN6-217ENST00000636964 EIF6P56537 245 aaKnown RBP13.16□□□□□ -0.3
CLN6-217ENST00000636964 PTPAQ15257 358 aa13.16□□□□□ -0.3
CLN6-217ENST00000636964 SPECC1Q5M775 1068 aa13.16□□□□□ -0.3
CLN6-217ENST00000636964 TRIM34Q9BYJ4 488 aa13.16□□□□□ -0.3
CLN6-217ENST00000636964 FAM53CQ9NYF3 392 aa13.16□□□□□ -0.3
CLN6-217ENST00000636964 SUGT1Q9Y2Z0 365 aa13.16□□□□□ -0.3
CLN6-217ENST00000636964 XBP1P17861 261 aa13.16□□□□□ -0.3
CLN6-217ENST00000636964 ANO6Q4KMQ2 910 aa13.16□□□□□ -0.3
CLN6-217ENST00000636964 CLEC10AQ8IUN9 316 aa13.16□□□□□ -0.3
CLN6-217ENST00000636964 CEP95Q96GE4 821 aa13.16□□□□□ -0.3
CLN6-217ENST00000636964 C16orf45Q96MC5 204 aaPredicted RBP13.16□□□□□ -0.3
CLN6-217ENST00000636964 ZNF287Q9HBT7 754 aa13.16□□□□□ -0.3
CLN6-217ENST00000636964 NRBP1Q9UHY1 535 aa13.16□□□□□ -0.3
CLN6-217ENST00000636964 PCDHB6Q9Y5E3 794 aa13.16□□□□□ -0.3
CLN6-217ENST00000636964 ADAMTSL1Q8N6G6 1762 aa13.16□□□□□ -0.3
CLN6-217ENST00000636964 MYH1P12882 1939 aa13.15□□□□□ -0.3
CLN6-217ENST00000636964 ADAMTS3O15072 1205 aa13.15□□□□□ -0.3
CLN6-217ENST00000636964 FMR1NBQ8N0W7 255 aaPredicted RBP13.15□□□□□ -0.3
CLN6-217ENST00000636964 SDF4Q9BRK5 362 aa13.15□□□□□ -0.3
CLN6-217ENST00000636964 FOXP1Q9H334 677 aaPredicted RBP13.15□□□□□ -0.3
CLN6-217ENST00000636964 PPIP5K2O43314 1243 aa13.15□□□□□ -0.3
CLN6-217ENST00000636964 KIF5BP33176 963 aa13.15□□□□□ -0.3
CLN6-217ENST00000636964 DACT2Q5SW24 774 aa13.15□□□□□ -0.3
CLN6-217ENST00000636964 GPKOWQ92917 476 aaPredicted RBP eCLIP13.15□□□□□ -0.3
CLN6-217ENST00000636964 PHF20Q9BVI0 1012 aa13.15□□□□□ -0.3
CLN6-217ENST00000636964 FBXO41Q8TF61 875 aa13.15□□□□□ -0.31
CLN6-217ENST00000636964 MAD2L2Q9UI95 211 aa13.15□□□□□ -0.31
CLN6-217ENST00000636964 SNED1Q8TER0 1413 aa13.14□□□□□ -0.31
CLN6-217ENST00000636964 DLEC1Q9Y238 1755 aa13.14□□□□□ -0.31
CLN6-217ENST00000636964 A0A1W2PQ27 194 aa13.14□□□□□ -0.31
CLN6-217ENST00000636964 A0A1W2PQ64 194 aa13.14□□□□□ -0.31
CLN6-217ENST00000636964 A0A1W2PQD8 194 aa13.14□□□□□ -0.31
CLN6-217ENST00000636964 FAM196BA6NMK8 535 aa13.14□□□□□ -0.31
CLN6-217ENST00000636964 SYCP1Q15431 976 aa13.14□□□□□ -0.31
CLN6-217ENST00000636964 KMT5BQ4FZB7 885 aa13.14□□□□□ -0.31
CLN6-217ENST00000636964 STRIP1Q5VSL9 837 aa13.14□□□□□ -0.31
CLN6-217ENST00000636964 CC2D2BQ6DHV5 1058 aa13.14□□□□□ -0.31
CLN6-217ENST00000636964 HHIPL2Q6UWX4 724 aa13.14□□□□□ -0.31
CLN6-217ENST00000636964 LUZP1Q86V48 1076 aa13.14□□□□□ -0.31
CLN6-217ENST00000636964 NEDD1Q8NHV4 660 aa13.14□□□□□ -0.31
CLN6-217ENST00000636964 DNAJC25Q9H1X3 360 aa13.14□□□□□ -0.31
CLN6-217ENST00000636964 SCN9AQ15858 1988 aa13.14□□□□□ -0.31
CLN6-217ENST00000636964 ZBTB7AO95365 584 aa13.14□□□□□ -0.31
CLN6-217ENST00000636964 SCG2P13521 617 aa13.14□□□□□ -0.31
CLN6-217ENST00000636964 PFKFB1P16118 471 aa13.14□□□□□ -0.31
CLN6-217ENST00000636964 DPEP1P16444 411 aa13.14□□□□□ -0.31
CLN6-217ENST00000636964 KRT2P35908 639 aa13.14□□□□□ -0.31
CLN6-217ENST00000636964 GRIN1Q05586 938 aa13.14□□□□□ -0.31
CLN6-217ENST00000636964 SLC35G1Q2M3R5 365 aa13.14□□□□□ -0.31
CLN6-217ENST00000636964 USP17L2Q6R6M4 530 aa13.14□□□□□ -0.31
CLN6-217ENST00000636964 RBM43Q6ZSC3 357 aaKnown RBP13.14□□□□□ -0.31
CLN6-217ENST00000636964 TCP11L1Q9NUJ3 509 aa13.14□□□□□ -0.31
CLN6-217ENST00000636964 RGPD3A6NKT7 1758 aaPredicted RBP13.14□□□□□ -0.31
CLN6-217ENST00000636964 RGPD4Q7Z3J3 1758 aa13.14□□□□□ -0.31
CLN6-217ENST00000636964 DDX60LQ5H9U9 1706 aaKnown RBP13.13□□□□□ -0.31
CLN6-217ENST00000636964 TULP2O00295 520 aa13.13□□□□□ -0.31
CLN6-217ENST00000636964 AKR1B1P15121 316 aa13.13□□□□□ -0.31
CLN6-217ENST00000636964 NLRP5P59047 1200 aa13.13□□□□□ -0.31
CLN6-217ENST00000636964 SHC4Q6S5L8 630 aa13.13□□□□□ -0.31
CLN6-217ENST00000636964 TTLL6Q8N841 843 aa13.13□□□□□ -0.31
CLN6-217ENST00000636964 ANKS1AQ92625 1134 aa13.13□□□□□ -0.31
CLN6-217ENST00000636964 YDJCA8MPS7 323 aa13.13□□□□□ -0.31
CLN6-217ENST00000636964 WNT7AO00755 349 aa13.13□□□□□ -0.31
CLN6-217ENST00000636964 ZNF202O95125 648 aa13.13□□□□□ -0.31
CLN6-217ENST00000636964 OSBPL5Q9H0X9 879 aaPredicted RBP13.13□□□□□ -0.31
CLN6-217ENST00000636964 VAT1LQ9HCJ6 419 aa13.13□□□□□ -0.31
CLN6-217ENST00000636964 SMTNL1A8MU46 457 aa13.13□□□□□ -0.31
CLN6-217ENST00000636964 CYTH3O43739 400 aa13.13□□□□□ -0.31
CLN6-217ENST00000636964 GRM4Q14833 912 aa13.13□□□□□ -0.31
CLN6-217ENST00000636964 NPY5RQ15761 445 aa13.13□□□□□ -0.31
CLN6-217ENST00000636964 RILPL1Q5EBL4 403 aa13.13□□□□□ -0.31
CLN6-217ENST00000636964 SERPINB13Q9UIV8 391 aa13.13□□□□□ -0.31
CLN6-217ENST00000636964 ATF5Q9Y2D1 282 aaPredicted RBP13.13□□□□□ -0.31
CLN6-217ENST00000636964 CMA1P23946 247 aa13.12□□□□□ -0.31
CLN6-217ENST00000636964 PFKFB3Q16875 520 aaPredicted RBP13.12□□□□□ -0.31
CLN6-217ENST00000636964 ZSCAN29Q8IWY8 852 aaPredicted RBP13.12□□□□□ -0.31
CLN6-217ENST00000636964 LRRC47Q8N1G4 583 aaKnown RBP13.12□□□□□ -0.31
CLN6-217ENST00000636964 ZNF277Q9NRM2 450 aaPredicted RBP13.12□□□□□ -0.31
CLN6-217ENST00000636964 PPP1R1BQ9UD71 204 aaPredicted RBP13.12□□□□□ -0.31
CLN6-217ENST00000636964 MPHOSPH10O00566 681 aaKnown RBP13.12□□□□□ -0.31
CLN6-217ENST00000636964 PPP6R2O75170 966 aa13.12□□□□□ -0.31
CLN6-217ENST00000636964 GABPAQ06546 454 aa13.12□□□□□ -0.31
CLN6-217ENST00000636964 CCDC178Q5BJE1 867 aa13.12□□□□□ -0.31
CLN6-217ENST00000636964 JMYQ8N9B5 988 aa13.12□□□□□ -0.31
CLN6-217ENST00000636964 ZDHHC15Q96MV8 337 aa13.12□□□□□ -0.31
CLN6-217ENST00000636964 CBX8Q9HC52 389 aa13.12□□□□□ -0.31
CLN6-217ENST00000636964 KLRF2D3W0D1 207 aa13.11□□□□□ -0.31
CLN6-217ENST00000636964 RAD17O75943 681 aa13.11□□□□□ -0.31
CLN6-217ENST00000636964 ATP2B2Q01814 1243 aa13.11□□□□□ -0.31
CLN6-217ENST00000636964 HOMER1Q86YM7 354 aa13.11□□□□□ -0.31
CLN6-217ENST00000636964 UBA5Q9GZZ9 404 aa13.11□□□□□ -0.31
CLN6-217ENST00000636964 TDRD3Q9H7E2 651 aaKnown RBP13.11□□□□□ -0.31
CLN6-217ENST00000636964 ERICH4A6NGS2 130 aa13.11□□□□□ -0.31
CLN6-217ENST00000636964 USP17L5A8MUK1 530 aa13.11□□□□□ -0.31
CLN6-217ENST00000636964 KCNA3P22001 575 aa13.11□□□□□ -0.31
CLN6-217ENST00000636964 ZNF174Q15697 407 aa13.11□□□□□ -0.31
CLN6-217ENST00000636964 SHROOM1Q2M3G4 852 aaPredicted RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms