RNA–Protein interactions for RNA: ENST00000622668.4

HDAC9-229, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-229ENST00000622668 WNT10BO00744 389 aa10.28□□□□□ -0.76
HDAC9-229ENST00000622668 INPP5BP32019 993 aa10.28□□□□□ -0.76
HDAC9-229ENST00000622668 GTF2A2P52657 109 aa10.28□□□□□ -0.76
HDAC9-229ENST00000622668 NFIAQ12857 509 aa10.28□□□□□ -0.76
HDAC9-229ENST00000622668 HS2ST1Q7LGA3 356 aa10.28□□□□□ -0.76
HDAC9-229ENST00000622668 TPH2Q8IWU9 490 aa10.28□□□□□ -0.76
HDAC9-229ENST00000622668 CEP95Q96GE4 821 aa10.28□□□□□ -0.76
HDAC9-229ENST00000622668 ZFP91Q96JP5 570 aaPredicted RBP10.28□□□□□ -0.76
HDAC9-229ENST00000622668 ZSCAN16Q9H4T2 348 aaPredicted RBP10.28□□□□□ -0.76
HDAC9-229ENST00000622668 ZNHIT6Q9NWK9 470 aaKnown RBP10.28□□□□□ -0.76
HDAC9-229ENST00000622668 SSR1P43307 286 aaKnown RBP10.28□□□□□ -0.76
HDAC9-229ENST00000622668 HAUS3Q68CZ6 603 aa10.28□□□□□ -0.76
HDAC9-229ENST00000622668 APBB1IPQ7Z5R6 666 aaPredicted RBP10.28□□□□□ -0.76
HDAC9-229ENST00000622668 PIGSQ96S52 555 aa10.28□□□□□ -0.76
HDAC9-229ENST00000622668 CPVLQ9H3G5 476 aa10.28□□□□□ -0.76
HDAC9-229ENST00000622668 COG2Q14746 738 aa10.27□□□□□ -0.76
HDAC9-229ENST00000622668 CDC37Q16543 378 aaPredicted RBP10.27□□□□□ -0.76
HDAC9-229ENST00000622668 CLEC10AQ8IUN9 316 aa10.27□□□□□ -0.76
HDAC9-229ENST00000622668 ANKRD13CQ8N6S4 541 aa10.27□□□□□ -0.76
HDAC9-229ENST00000622668 DHX58Q96C10 678 aa10.27□□□□□ -0.76
HDAC9-229ENST00000622668 CYP21A2P08686 494 aa10.27□□□□□ -0.77
HDAC9-229ENST00000622668 POTEJP0CG39 1038 aa10.27□□□□□ -0.77
HDAC9-229ENST00000622668 GSPT1P15170 499 aaKnown RBP10.27□□□□□ -0.77
HDAC9-229ENST00000622668 RAD51AP2Q09MP3 1159 aa10.27□□□□□ -0.77
HDAC9-229ENST00000622668 RSPH3Q86UC2 560 aa10.27□□□□□ -0.77
HDAC9-229ENST00000622668 ABI1Q8IZP0 508 aa10.27□□□□□ -0.77
HDAC9-229ENST00000622668 MMP19Q99542 508 aa10.27□□□□□ -0.77
HDAC9-229ENST00000622668 ZSWIM5Q9P217 1185 aa10.27□□□□□ -0.77
HDAC9-229ENST00000622668 TRIM17Q9Y577 477 aa10.27□□□□□ -0.77
HDAC9-229ENST00000622668 NEBLO76041 1014 aa10.27□□□□□ -0.77
HDAC9-229ENST00000622668 TMOD1P28289 359 aa10.27□□□□□ -0.77
HDAC9-229ENST00000622668 HOXA13P31271 388 aaPredicted RBP10.27□□□□□ -0.77
HDAC9-229ENST00000622668 FTOQ9C0B1 505 aaKnown RBP eCLIP10.27□□□□□ -0.77
HDAC9-229ENST00000622668 EFCC1Q9HA90 598 aa10.27□□□□□ -0.77
HDAC9-229ENST00000622668 STAP2Q9UGK3 403 aa10.27□□□□□ -0.77
HDAC9-229ENST00000622668 MED23Q9ULK4 1368 aa10.27□□□□□ -0.77
HDAC9-229ENST00000622668 FLT1P17948 1338 aa10.27□□□□□ -0.77
HDAC9-229ENST00000622668 MYL3P08590 195 aa10.27□□□□□ -0.77
HDAC9-229ENST00000622668 SMTNP53814 917 aa10.27□□□□□ -0.77
HDAC9-229ENST00000622668 SKIV2LQ15477 1246 aaKnown RBP10.27□□□□□ -0.77
HDAC9-229ENST00000622668 CDCA5Q96FF9 252 aa10.27□□□□□ -0.77
HDAC9-229ENST00000622668 IMPG2Q9BZV3 1241 aa10.27□□□□□ -0.77
HDAC9-229ENST00000622668 INCENPQ9NQS7 918 aa10.27□□□□□ -0.77
HDAC9-229ENST00000622668 LRWD1Q9UFC0 647 aa10.27□□□□□ -0.77
HDAC9-229ENST00000622668 CPA4Q9UI42 421 aa10.27□□□□□ -0.77
HDAC9-229ENST00000622668 POLR1AO95602 1720 aaPredicted RBP10.26□□□□□ -0.77
HDAC9-229ENST00000622668 HDLBPQ00341 1268 aaKnown RBP10.26□□□□□ -0.77
HDAC9-229ENST00000622668 USP37Q86T82 979 aa10.26□□□□□ -0.77
HDAC9-229ENST00000622668 SNX29Q8TEQ0 813 aa10.26□□□□□ -0.77
HDAC9-229ENST00000622668 LBHD1Q9BQE6 289 aaPredicted RBP10.26□□□□□ -0.77
HDAC9-229ENST00000622668 PYM1Q9BRP8 204 aaKnown RBP10.26□□□□□ -0.77
HDAC9-229ENST00000622668 C19orf81C9J6K1 198 aa10.26□□□□□ -0.77
HDAC9-229ENST00000622668 CCDC192P0DO97 292 aa10.26□□□□□ -0.77
HDAC9-229ENST00000622668 SYKP43405 635 aa10.26□□□□□ -0.77
HDAC9-229ENST00000622668 PPM1FP49593 454 aaPredicted RBP10.26□□□□□ -0.77
HDAC9-229ENST00000622668 CALCRLQ16602 461 aa10.26□□□□□ -0.77
HDAC9-229ENST00000622668 FZD1Q9UP38 647 aa10.26□□□□□ -0.77
HDAC9-229ENST00000622668 FOSP01100 380 aaPredicted RBP10.26□□□□□ -0.77
HDAC9-229ENST00000622668 TFRCP02786 760 aaKnown RBP10.26□□□□□ -0.77
HDAC9-229ENST00000622668 SCG2P13521 617 aa10.26□□□□□ -0.77
HDAC9-229ENST00000622668 INF2Q27J81 1249 aa10.26□□□□□ -0.77
HDAC9-229ENST00000622668 HACE1Q8IYU2 909 aa10.26□□□□□ -0.77
HDAC9-229ENST00000622668 RETREG2Q8NC44 543 aa10.26□□□□□ -0.77
HDAC9-229ENST00000622668 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.26□□□□□ -0.77
HDAC9-229ENST00000622668 OPTNQ96CV9 577 aa10.26□□□□□ -0.77
HDAC9-229ENST00000622668 RMDN3Q96TC7 470 aa10.26□□□□□ -0.77
HDAC9-229ENST00000622668 DDAH1O94760 285 aa10.25□□□□□ -0.77
HDAC9-229ENST00000622668 ALDH1A1P00352 501 aa10.25□□□□□ -0.77
HDAC9-229ENST00000622668 MTIF2P46199 727 aaKnown RBP10.25□□□□□ -0.77
HDAC9-229ENST00000622668 NFX1Q12986 1120 aaKnown RBP10.25□□□□□ -0.77
HDAC9-229ENST00000622668 PGBD1Q96JS3 809 aa10.25□□□□□ -0.77
HDAC9-229ENST00000622668 TBC1D32Q96NH3 1257 aa10.25□□□□□ -0.77
HDAC9-229ENST00000622668 TBC1D2Q9BYX2 928 aa10.25□□□□□ -0.77
HDAC9-229ENST00000622668 CCDC85CA6NKD9 419 aa10.25□□□□□ -0.77
HDAC9-229ENST00000622668 TRAF5O00463 557 aa10.25□□□□□ -0.77
HDAC9-229ENST00000622668 FGFR1OPO95684 399 aaKnown RBP10.25□□□□□ -0.77
HDAC9-229ENST00000622668 C6orf222P0C671 652 aaPredicted RBP10.25□□□□□ -0.77
HDAC9-229ENST00000622668 KRT13P13646 458 aa10.25□□□□□ -0.77
HDAC9-229ENST00000622668 FCGRTP55899 365 aa10.25□□□□□ -0.77
HDAC9-229ENST00000622668 STRN3Q13033 797 aa10.25□□□□□ -0.77
HDAC9-229ENST00000622668 NOGQ13253 232 aa10.25□□□□□ -0.77
HDAC9-229ENST00000622668 TTC38Q5R3I4 469 aa10.25□□□□□ -0.77
HDAC9-229ENST00000622668 KRT40Q6A162 431 aa10.25□□□□□ -0.77
HDAC9-229ENST00000622668 TMED8Q6PL24 325 aaPredicted RBP10.25□□□□□ -0.77
HDAC9-229ENST00000622668 DPF3Q92784 378 aa10.25□□□□□ -0.77
HDAC9-229ENST00000622668 SMARCE1Q969G3 411 aa10.25□□□□□ -0.77
HDAC9-229ENST00000622668 TRERF1Q96PN7 1200 aa10.25□□□□□ -0.77
HDAC9-229ENST00000622668 NUDT12Q9BQG2 462 aa10.25□□□□□ -0.77
HDAC9-229ENST00000622668 TSKSQ9UJT2 592 aa10.25□□□□□ -0.77
HDAC9-229ENST00000622668 NMT2O60551 498 aa10.25□□□□□ -0.77
HDAC9-229ENST00000622668 CTNND1O60716 968 aaKnown RBP10.25□□□□□ -0.77
HDAC9-229ENST00000622668 CYP4A11Q02928 519 aa10.25□□□□□ -0.77
HDAC9-229ENST00000622668 RILPL1Q5EBL4 403 aa10.25□□□□□ -0.77
HDAC9-229ENST00000622668 XKR9Q5GH70 373 aa10.25□□□□□ -0.77
HDAC9-229ENST00000622668 GPRC5AQ8NFJ5 357 aa10.25□□□□□ -0.77
HDAC9-229ENST00000622668 FAM193BQ96PV7 902 aaPredicted RBP10.25□□□□□ -0.77
HDAC9-229ENST00000622668 TMEM47Q9BQJ4 181 aa10.25□□□□□ -0.77
HDAC9-229ENST00000622668 FAM49AQ9H0Q0 323 aaPredicted RBP10.25□□□□□ -0.77
HDAC9-229ENST00000622668 MAP2P11137 1827 aaKnown RBP10.25□□□□□ -0.77
HDAC9-229ENST00000622668 TMEM88BA6NKF7 163 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms