RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 CYP2C19P33261 490 aa13.78□□□□□ -0.2
CPNE3-210ENST00000621245 ICA1Q05084 483 aa13.78□□□□□ -0.2
CPNE3-210ENST00000621245 CTR9Q6PD62 1173 aa13.78□□□□□ -0.2
CPNE3-210ENST00000621245 C16orf86Q6ZW13 317 aa13.78□□□□□ -0.2
CPNE3-210ENST00000621245 CCAR1Q8IX12 1150 aaKnown RBP13.78□□□□□ -0.2
CPNE3-210ENST00000621245 ANKLE1Q8NAG6 615 aa13.78□□□□□ -0.2
CPNE3-210ENST00000621245 OSBP2Q969R2 916 aa13.78□□□□□ -0.2
CPNE3-210ENST00000621245 ATG4CQ96DT6 458 aa13.78□□□□□ -0.2
CPNE3-210ENST00000621245 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.78□□□□□ -0.2
CPNE3-210ENST00000621245 C11orf49Q9H6J7 331 aa13.78□□□□□ -0.2
CPNE3-210ENST00000621245 CWC22Q9HCG8 908 aaKnown RBP13.78□□□□□ -0.2
CPNE3-210ENST00000621245 EPB41L4AQ9HCS5 686 aaPredicted RBP13.78□□□□□ -0.2
CPNE3-210ENST00000621245 ATP8A2Q9NTI2 1148 aa13.78□□□□□ -0.2
CPNE3-210ENST00000621245 FBXO28Q9NVF7 368 aa13.78□□□□□ -0.2
CPNE3-210ENST00000621245 SWAP70Q9UH65 585 aa13.78□□□□□ -0.2
CPNE3-210ENST00000621245 PCDHB15Q9Y5E8 787 aa13.78□□□□□ -0.2
CPNE3-210ENST00000621245 NR2E3Q9Y5X4 410 aa13.78□□□□□ -0.2
CPNE3-210ENST00000621245 M0R2C6 588 aa13.77□□□□□ -0.21
CPNE3-210ENST00000621245 COL6A1P12109 1028 aa13.77□□□□□ -0.21
CPNE3-210ENST00000621245 STRBPQ96SI9 672 aaKnown RBP13.77□□□□□ -0.21
CPNE3-210ENST00000621245 NBPF3Q9H094 633 aa13.77□□□□□ -0.21
CPNE3-210ENST00000621245 DCTPP1Q9H773 170 aa13.77□□□□□ -0.21
CPNE3-210ENST00000621245 ECHDC1Q9NTX5 307 aa13.77□□□□□ -0.21
CPNE3-210ENST00000621245 TMX2Q9Y320 296 aa13.77□□□□□ -0.21
CPNE3-210ENST00000621245 SLC15A5A6NIM6 579 aa13.76□□□□□ -0.21
CPNE3-210ENST00000621245 GSG1L2A8MUP6 293 aa13.76□□□□□ -0.21
CPNE3-210ENST00000621245 COBLO75128 1261 aa13.76□□□□□ -0.21
CPNE3-210ENST00000621245 PPP1R37O75864 691 aa13.76□□□□□ -0.21
CPNE3-210ENST00000621245 EEF2P13639 858 aaKnown RBP13.76□□□□□ -0.21
CPNE3-210ENST00000621245 ADORA2AP29274 412 aa13.76□□□□□ -0.21
CPNE3-210ENST00000621245 FXR2P51116 673 aaKnown RBP eCLIP13.76□□□□□ -0.21
CPNE3-210ENST00000621245 LRRC26Q2I0M4 334 aa13.76□□□□□ -0.21
CPNE3-210ENST00000621245 LRCH3Q96II8 777 aa13.76□□□□□ -0.21
CPNE3-210ENST00000621245 SPATC1LQ9H0A9 340 aa13.76□□□□□ -0.21
CPNE3-210ENST00000621245 VCPKMTQ9H867 229 aa13.76□□□□□ -0.21
CPNE3-210ENST00000621245 ROBO3Q96MS0 1386 aa13.75□□□□□ -0.21
CPNE3-210ENST00000621245 FLOT1O75955 427 aa13.75□□□□□ -0.21
CPNE3-210ENST00000621245 HOXC6P09630 235 aa13.75□□□□□ -0.21
CPNE3-210ENST00000621245 ERCC3P19447 782 aa13.75□□□□□ -0.21
CPNE3-210ENST00000621245 CCNA1P78396 465 aa13.75□□□□□ -0.21
CPNE3-210ENST00000621245 ATP2B2Q01814 1243 aa13.75□□□□□ -0.21
CPNE3-210ENST00000621245 COG2Q14746 738 aa13.75□□□□□ -0.21
CPNE3-210ENST00000621245 TMEM132BQ14DG7 1078 aa13.75□□□□□ -0.21
CPNE3-210ENST00000621245 ANO1Q5XXA6 986 aa13.75□□□□□ -0.21
CPNE3-210ENST00000621245 KBTBD3Q8NAB2 608 aa13.75□□□□□ -0.21
CPNE3-210ENST00000621245 SEC62Q99442 399 aaKnown RBP13.75□□□□□ -0.21
CPNE3-210ENST00000621245 NUP88Q99567 741 aaPredicted RBP13.75□□□□□ -0.21
CPNE3-210ENST00000621245 GDF15Q99988 308 aa13.75□□□□□ -0.21
CPNE3-210ENST00000621245 PRUNE2Q8WUY3 3088 aa13.75□□□□□ -0.21
CPNE3-210ENST00000621245 CYBAP13498 195 aa13.74□□□□□ -0.21
CPNE3-210ENST00000621245 RASA1P20936 1047 aa13.74□□□□□ -0.21
CPNE3-210ENST00000621245 PLS1Q14651 629 aa13.74□□□□□ -0.21
CPNE3-210ENST00000621245 TRMT44Q8IYL2 757 aaKnown RBP13.74□□□□□ -0.21
CPNE3-210ENST00000621245 PI4K2BQ8TCG2 481 aa13.74□□□□□ -0.21
CPNE3-210ENST00000621245 CHMP4BQ9H444 224 aaKnown RBP13.74□□□□□ -0.21
CPNE3-210ENST00000621245 ARHGEF10LQ9HCE6 1279 aa13.74□□□□□ -0.21
CPNE3-210ENST00000621245 LCTP09848 1927 aa13.74□□□□□ -0.21
CPNE3-210ENST00000621245 WDR46O15213 610 aaKnown RBP13.73□□□□□ -0.21
CPNE3-210ENST00000621245 GPAA1O43292 621 aa13.73□□□□□ -0.21
CPNE3-210ENST00000621245 MAGEA10P43363 369 aaPredicted RBP13.73□□□□□ -0.21
CPNE3-210ENST00000621245 PRAMEF19Q5SWL8 479 aa13.73□□□□□ -0.21
CPNE3-210ENST00000621245 FAM83BQ5T0W9 1011 aa13.73□□□□□ -0.21
CPNE3-210ENST00000621245 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.73□□□□□ -0.21
CPNE3-210ENST00000621245 NCAPG2Q86XI2 1143 aa13.73□□□□□ -0.21
CPNE3-210ENST00000621245 EFCAB3Q8N7B9 438 aa13.73□□□□□ -0.21
CPNE3-210ENST00000621245 FBXO22Q8NEZ5 403 aa13.73□□□□□ -0.21
CPNE3-210ENST00000621245 REPS2Q8NFH8 660 aa13.73□□□□□ -0.21
CPNE3-210ENST00000621245 APPBP2Q92624 585 aa13.73□□□□□ -0.21
CPNE3-210ENST00000621245 LPAR1Q92633 364 aa13.73□□□□□ -0.21
CPNE3-210ENST00000621245 ARPP21Q9UBL0 812 aaPredicted RBP13.73□□□□□ -0.21
CPNE3-210ENST00000621245 DDX20Q9UHI6 824 aaKnown RBP13.73□□□□□ -0.21
CPNE3-210ENST00000621245 IVNS1ABPQ9Y6Y0 642 aa13.73□□□□□ -0.21
CPNE3-210ENST00000621245 LRRC37A2A6NM11 1700 aa13.73□□□□□ -0.21
CPNE3-210ENST00000621245 VCANP13611 3396 aa13.72□□□□□ -0.21
CPNE3-210ENST00000621245 SALL3Q9BXA9 1300 aa13.72□□□□□ -0.21
CPNE3-210ENST00000621245 MINDY4BA8MYZ0 360 aa13.72□□□□□ -0.21
CPNE3-210ENST00000621245 RNF113AO15541 343 aaKnown RBP13.72□□□□□ -0.21
CPNE3-210ENST00000621245 MAP3K13O43283 966 aa13.72□□□□□ -0.21
CPNE3-210ENST00000621245 PRDM1O75626 825 aa13.72□□□□□ -0.21
CPNE3-210ENST00000621245 GLRX3O76003 335 aaKnown RBP13.72□□□□□ -0.21
CPNE3-210ENST00000621245 CAPN2P17655 700 aa13.72□□□□□ -0.21
CPNE3-210ENST00000621245 CNGA1P29973 690 aa13.72□□□□□ -0.21
CPNE3-210ENST00000621245 MFSD14CQ5VZR4 134 aa13.72□□□□□ -0.21
CPNE3-210ENST00000621245 ZSCAN25Q6NSZ9 544 aa13.72□□□□□ -0.21
CPNE3-210ENST00000621245 SHCBP1Q8NEM2 672 aa13.72□□□□□ -0.21
CPNE3-210ENST00000621245 CCDC17Q96LX7 622 aa13.72□□□□□ -0.21
CPNE3-210ENST00000621245 HOXC10Q9NYD6 342 aa13.72□□□□□ -0.21
CPNE3-210ENST00000621245 IGKV6D-41A0A0C4DH26 115 aa13.71□□□□□ -0.21
CPNE3-210ENST00000621245 FOXP2O15409 715 aa13.71□□□□□ -0.21
CPNE3-210ENST00000621245 RAD21O60216 631 aa13.71□□□□□ -0.21
CPNE3-210ENST00000621245 PGK2P07205 417 aa13.71□□□□□ -0.21
CPNE3-210ENST00000621245 RRP1P56182 461 aaKnown RBP13.71□□□□□ -0.21
CPNE3-210ENST00000621245 SBK1Q52WX2 424 aa13.71□□□□□ -0.21
CPNE3-210ENST00000621245 GJC2Q5T442 439 aaPredicted RBP13.71□□□□□ -0.21
CPNE3-210ENST00000621245 DPP9Q86TI2 863 aa13.71□□□□□ -0.21
CPNE3-210ENST00000621245 KIF12Q96FN5 646 aa13.71□□□□□ -0.21
CPNE3-210ENST00000621245 CRBNQ96SW2 442 aa13.71□□□□□ -0.21
CPNE3-210ENST00000621245 ZNF214Q9UL59 606 aaPredicted RBP13.71□□□□□ -0.21
CPNE3-210ENST00000621245 ADAMTS5Q9UNA0 930 aa13.71□□□□□ -0.21
CPNE3-210ENST00000621245 SPTBN5Q9NRC6 3674 aaKnown RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms