RNA–Protein interactions for RNA: ENST00000600286.1

USHBP1-210, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 598 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-210ENST00000600286 TAF1CQ15572 869 aaPredicted RBP19.53■□□□□ 0.72
USHBP1-210ENST00000600286 CCDC96Q2M329 555 aa19.53■□□□□ 0.72
USHBP1-210ENST00000600286 GMCL1Q96IK5 515 aa19.53■□□□□ 0.72
USHBP1-210ENST00000600286 PARK7Q99497 189 aaKnown RBP19.53■□□□□ 0.72
USHBP1-210ENST00000600286 PDRG1Q9NUG6 133 aa19.53■□□□□ 0.72
USHBP1-210ENST00000600286 HOXC10Q9NYD6 342 aa19.53■□□□□ 0.72
USHBP1-210ENST00000600286 CTDP1Q9Y5B0 961 aaPredicted RBP19.53■□□□□ 0.72
USHBP1-210ENST00000600286 SH2B2O14492 632 aaPredicted RBP19.52■□□□□ 0.72
USHBP1-210ENST00000600286 CALM1P0DP23 149 aa19.52■□□□□ 0.72
USHBP1-210ENST00000600286 CALM2P0DP24 149 aa19.52■□□□□ 0.72
USHBP1-210ENST00000600286 CALM3P0DP25 149 aa19.52■□□□□ 0.72
USHBP1-210ENST00000600286 ANKRD1Q15327 319 aa19.52■□□□□ 0.72
USHBP1-210ENST00000600286 TREML2Q5T2D2 321 aa19.52■□□□□ 0.72
USHBP1-210ENST00000600286 GPAT2Q6NUI2 795 aa19.52■□□□□ 0.72
USHBP1-210ENST00000600286 Q6ZUG5 572 aa19.52■□□□□ 0.72
USHBP1-210ENST00000600286 NKX2-3Q8TAU0 364 aa19.52■□□□□ 0.72
USHBP1-210ENST00000600286 GTF3C2Q8WUA4 911 aaPredicted RBP19.52■□□□□ 0.72
USHBP1-210ENST00000600286 CHURC1Q8WUH1 139 aa19.52■□□□□ 0.72
USHBP1-210ENST00000600286 PTPN18Q99952 460 aa19.52■□□□□ 0.72
USHBP1-210ENST00000600286 LRRC2Q9BYS8 371 aa19.52■□□□□ 0.72
USHBP1-210ENST00000600286 LY9Q9HBG7 655 aa19.52■□□□□ 0.72
USHBP1-210ENST00000600286 FEM1BQ9UK73 627 aa19.52■□□□□ 0.72
USHBP1-210ENST00000600286 SLC12A7Q9Y666 1083 aa19.52■□□□□ 0.72
USHBP1-210ENST00000600286 IGF2BP3O00425 579 aaKnown RBP eCLIP19.51■□□□□ 0.71
USHBP1-210ENST00000600286 MOGSQ13724 837 aa19.51■□□□□ 0.71
USHBP1-210ENST00000600286 COG2Q14746 738 aa19.51■□□□□ 0.71
USHBP1-210ENST00000600286 FAM83BQ5T0W9 1011 aa19.51■□□□□ 0.71
USHBP1-210ENST00000600286 GPATCH4Q5T3I0 446 aaKnown RBP19.51■□□□□ 0.71
USHBP1-210ENST00000600286 CATSPERGQ6ZRH7 1159 aa19.51■□□□□ 0.71
USHBP1-210ENST00000600286 FAM43AQ8N2R8 423 aa19.51■□□□□ 0.71
USHBP1-210ENST00000600286 SMCR8Q8TEV9 937 aaPredicted RBP19.51■□□□□ 0.71
USHBP1-210ENST00000600286 UPF3BQ9BZI7 483 aaKnown RBP19.51■□□□□ 0.71
USHBP1-210ENST00000600286 MCOLN1Q9GZU1 580 aa19.51■□□□□ 0.71
USHBP1-210ENST00000600286 NAP1L2Q9ULW6 460 aaPredicted RBP19.51■□□□□ 0.71
USHBP1-210ENST00000600286 TRPA1O75762 1119 aa19.5■□□□□ 0.71
USHBP1-210ENST00000600286 FLOT1O75955 427 aa19.5■□□□□ 0.71
USHBP1-210ENST00000600286 PARP1P09874 1014 aaKnown RBP19.5■□□□□ 0.71
USHBP1-210ENST00000600286 CPA1P15085 419 aa19.5■□□□□ 0.71
USHBP1-210ENST00000600286 KIF5BP33176 963 aa19.5■□□□□ 0.71
USHBP1-210ENST00000600286 DGKZQ13574 1117 aa19.5■□□□□ 0.71
USHBP1-210ENST00000600286 FAM160B2Q86V87 743 aa19.5■□□□□ 0.71
USHBP1-210ENST00000600286 CTCFLQ8NI51 663 aaPredicted RBP19.5■□□□□ 0.71
USHBP1-210ENST00000600286 IL17RAQ96F46 866 aa19.5■□□□□ 0.71
USHBP1-210ENST00000600286 TCEANC2Q96MN5 208 aa19.5■□□□□ 0.71
USHBP1-210ENST00000600286 HTTP42858 3142 aa19.49■□□□□ 0.71
USHBP1-210ENST00000600286 TMEM232C9JQI7 657 aa19.49■□□□□ 0.71
USHBP1-210ENST00000600286 DDAH1O94760 285 aa19.49■□□□□ 0.71
USHBP1-210ENST00000600286 NEK4P51957 841 aa19.49■□□□□ 0.71
USHBP1-210ENST00000600286 ASPRV1Q53RT3 343 aa19.49■□□□□ 0.71
USHBP1-210ENST00000600286 SAMD1Q6SPF0 538 aaPredicted RBP19.49■□□□□ 0.71
USHBP1-210ENST00000600286 SGMS1Q86VZ5 419 aa19.49■□□□□ 0.71
USHBP1-210ENST00000600286 FBXL16Q8N461 479 aa19.49■□□□□ 0.71
USHBP1-210ENST00000600286 PRPF38AQ8NAV1 312 aaKnown RBP19.49■□□□□ 0.71
USHBP1-210ENST00000600286 NUP133Q8WUM0 1156 aa19.49■□□□□ 0.71
USHBP1-210ENST00000600286 CHMP4CQ96CF2 233 aa19.49■□□□□ 0.71
USHBP1-210ENST00000600286 TBC1D32Q96NH3 1257 aa19.49■□□□□ 0.71
USHBP1-210ENST00000600286 ASCC2Q9H1I8 757 aaPredicted RBP19.49■□□□□ 0.71
USHBP1-210ENST00000600286 TNRC18O15417 2968 aaPredicted RBP19.48■□□□□ 0.71
USHBP1-210ENST00000600286 FDX1P10109 184 aa19.48■□□□□ 0.71
USHBP1-210ENST00000600286 PDHBP11177 359 aa19.48■□□□□ 0.71
USHBP1-210ENST00000600286 GCLCP48506 637 aaPredicted RBP19.48■□□□□ 0.71
USHBP1-210ENST00000600286 GNAQP50148 359 aa19.48■□□□□ 0.71
USHBP1-210ENST00000600286 STAT2P52630 851 aa19.48■□□□□ 0.71
USHBP1-210ENST00000600286 RABEP1Q15276 862 aa19.48■□□□□ 0.71
USHBP1-210ENST00000600286 ZNF654Q8IZM8 581 aa19.48■□□□□ 0.71
USHBP1-210ENST00000600286 BRF1Q92994 677 aa19.48■□□□□ 0.71
USHBP1-210ENST00000600286 MAP3K14Q99558 947 aa19.48■□□□□ 0.71
USHBP1-210ENST00000600286 NUP88Q99567 741 aaPredicted RBP19.48■□□□□ 0.71
USHBP1-210ENST00000600286 GREB1LQ9C091 1923 aaPredicted RBP19.47■□□□□ 0.71
USHBP1-210ENST00000600286 KLF18A0A0U1RQI7 1052 aa19.47■□□□□ 0.71
USHBP1-210ENST00000600286 ZBTB43O43298 467 aa19.47■□□□□ 0.71
USHBP1-210ENST00000600286 PLA2G6O60733 806 aa19.47■□□□□ 0.71
USHBP1-210ENST00000600286 RGS19P49795 217 aa19.47■□□□□ 0.71
USHBP1-210ENST00000600286 PPP2R5BQ15173 497 aa19.47■□□□□ 0.71
USHBP1-210ENST00000600286 KIAA1755Q5JYT7 1200 aa19.47■□□□□ 0.71
USHBP1-210ENST00000600286 KCTD1Q719H9 257 aa19.47■□□□□ 0.71
USHBP1-210ENST00000600286 P2RX7Q99572 595 aaKnown RBP19.47■□□□□ 0.71
USHBP1-210ENST00000600286 SLF1Q9BQI6 1058 aa19.47■□□□□ 0.71
USHBP1-210ENST00000600286 CFHR5Q9BXR6 569 aa19.47■□□□□ 0.71
USHBP1-210ENST00000600286 ALDH8A1Q9H2A2 487 aaPredicted RBP19.47■□□□□ 0.71
USHBP1-210ENST00000600286 GPCPD1Q9NPB8 672 aa19.47■□□□□ 0.71
USHBP1-210ENST00000600286 MYPNQ86TC9 1320 aa19.47■□□□□ 0.71
USHBP1-210ENST00000600286 PHIPQ8WWQ0 1821 aa19.46■□□□□ 0.71
USHBP1-210ENST00000600286 CCDC196A0A1B0GTZ2 297 aa19.46■□□□□ 0.71
USHBP1-210ENST00000600286 ST18O60284 1047 aa19.46■□□□□ 0.71
USHBP1-210ENST00000600286 ZBED4O75132 1171 aa19.46■□□□□ 0.71
USHBP1-210ENST00000600286 SNHG28P0DPA3 235 aa19.46■□□□□ 0.71
USHBP1-210ENST00000600286 CYP2C8P10632 490 aa19.46■□□□□ 0.71
USHBP1-210ENST00000600286 DSG3P32926 999 aa19.46■□□□□ 0.71
USHBP1-210ENST00000600286 HERVK_113P62684 666 aa19.46■□□□□ 0.71
USHBP1-210ENST00000600286 ZNF543Q08ER8 600 aa19.46■□□□□ 0.71
USHBP1-210ENST00000600286 MB21D1Q8N884 522 aa19.46■□□□□ 0.71
USHBP1-210ENST00000600286 KIFC2Q96AC6 838 aa19.46■□□□□ 0.71
USHBP1-210ENST00000600286 LZTS2Q9BRK4 669 aa19.46■□□□□ 0.71
USHBP1-210ENST00000600286 GPHNQ9NQX3 736 aaPredicted RBP19.46■□□□□ 0.71
USHBP1-210ENST00000600286 FRMPD2Q68DX3 1309 aaPredicted RBP19.46■□□□□ 0.71
USHBP1-210ENST00000600286 DHX16O60231 1041 aaKnown RBP19.45■□□□□ 0.7
USHBP1-210ENST00000600286 TLR2O60603 784 aa19.45■□□□□ 0.7
USHBP1-210ENST00000600286 RCAN1P53805 252 aa19.45■□□□□ 0.7
USHBP1-210ENST00000600286 APOBRQ0VD83 1088 aa19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms