RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 FAM83BQ5T0W9 1011 aa11.7□□□□□ -0.54
VRK3-216ENST00000599342 ZNF444Q8N0Y2 327 aaPredicted RBP11.7□□□□□ -0.54
VRK3-216ENST00000599342 PI4K2BQ8TCG2 481 aa11.7□□□□□ -0.54
VRK3-216ENST00000599342 EPB41L4AQ9HCS5 686 aaPredicted RBP11.7□□□□□ -0.54
VRK3-216ENST00000599342 STAP2Q9UGK3 403 aa11.7□□□□□ -0.54
VRK3-216ENST00000599342 ALPK3Q96L96 1907 aa11.69□□□□□ -0.54
VRK3-216ENST00000599342 PATL2C9JE40 543 aaKnown RBP11.69□□□□□ -0.54
VRK3-216ENST00000599342 SLC3A2P08195 630 aaKnown RBP11.69□□□□□ -0.54
VRK3-216ENST00000599342 COL6A1P12109 1028 aa11.69□□□□□ -0.54
VRK3-216ENST00000599342 CYBAP13498 195 aa11.69□□□□□ -0.54
VRK3-216ENST00000599342 SYN1P17600 705 aa11.69□□□□□ -0.54
VRK3-216ENST00000599342 COPB2P35606 906 aa11.69□□□□□ -0.54
VRK3-216ENST00000599342 TMEM132BQ14DG7 1078 aa11.69□□□□□ -0.54
VRK3-216ENST00000599342 RIOX2Q8IUF8 465 aa11.69□□□□□ -0.54
VRK3-216ENST00000599342 MMP19Q99542 508 aa11.69□□□□□ -0.54
VRK3-216ENST00000599342 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.69□□□□□ -0.54
VRK3-216ENST00000599342 NAPBQ9H115 298 aa11.69□□□□□ -0.54
VRK3-216ENST00000599342 FBXO28Q9NVF7 368 aa11.69□□□□□ -0.54
VRK3-216ENST00000599342 NYAP2Q9P242 653 aa11.69□□□□□ -0.54
VRK3-216ENST00000599342 PPP1R9AQ9ULJ8 1098 aa11.69□□□□□ -0.54
VRK3-216ENST00000599342 RLFQ13129 1914 aa11.68□□□□□ -0.54
VRK3-216ENST00000599342 DNM1LO00429 736 aa11.68□□□□□ -0.54
VRK3-216ENST00000599342 VWA5AO00534 786 aa11.68□□□□□ -0.54
VRK3-216ENST00000599342 COBLO75128 1261 aa11.68□□□□□ -0.54
VRK3-216ENST00000599342 PRDM1O75626 825 aa11.68□□□□□ -0.54
VRK3-216ENST00000599342 PDE4BQ07343 736 aa11.68□□□□□ -0.54
VRK3-216ENST00000599342 KCTD2Q14681 263 aa11.68□□□□□ -0.54
VRK3-216ENST00000599342 IFNL3Q8IZI9 196 aa11.68□□□□□ -0.54
VRK3-216ENST00000599342 OTUD7AQ8TE49 926 aaPredicted RBP11.68□□□□□ -0.54
VRK3-216ENST00000599342 MAML3Q96JK9 1138 aa11.68□□□□□ -0.54
VRK3-216ENST00000599342 CRBNQ96SW2 442 aa11.68□□□□□ -0.54
VRK3-216ENST00000599342 SLF1Q9BQI6 1058 aa11.68□□□□□ -0.54
VRK3-216ENST00000599342 SENP6Q9GZR1 1112 aaPredicted RBP11.68□□□□□ -0.54
VRK3-216ENST00000599342 CLIP2Q9UDT6 1046 aa11.68□□□□□ -0.54
VRK3-216ENST00000599342 ADAMTS5Q9UNA0 930 aa11.68□□□□□ -0.54
VRK3-216ENST00000599342 CTDP1Q9Y5B0 961 aaPredicted RBP11.68□□□□□ -0.54
VRK3-216ENST00000599342 FRMPD3Q5JV73 1810 aa11.67□□□□□ -0.54
VRK3-216ENST00000599342 GREB1LQ9C091 1923 aaPredicted RBP11.67□□□□□ -0.54
VRK3-216ENST00000599342 KBTBD13C9JR72 458 aa11.67□□□□□ -0.54
VRK3-216ENST00000599342 F5H6K3 240 aa11.67□□□□□ -0.54
VRK3-216ENST00000599342 SEPT4O43236 478 aa11.67□□□□□ -0.54
VRK3-216ENST00000599342 NDUFB10O96000 172 aa11.67□□□□□ -0.54
VRK3-216ENST00000599342 TSPY3P0CV98 308 aa11.67□□□□□ -0.54
VRK3-216ENST00000599342 TSPY8P0CW00 308 aa11.67□□□□□ -0.54
VRK3-216ENST00000599342 STAT3P40763 770 aa11.67□□□□□ -0.54
VRK3-216ENST00000599342 KLRC3Q07444 240 aa11.67□□□□□ -0.54
VRK3-216ENST00000599342 LRRC26Q2I0M4 334 aa11.67□□□□□ -0.54
VRK3-216ENST00000599342 ZMYM1Q5SVZ6 1142 aa11.67□□□□□ -0.54
VRK3-216ENST00000599342 ANKRD45Q5TZF3 282 aa11.67□□□□□ -0.54
VRK3-216ENST00000599342 ARRDC4Q8NCT1 418 aa11.67□□□□□ -0.54
VRK3-216ENST00000599342 TRPV1Q8NER1 839 aa11.67□□□□□ -0.54
VRK3-216ENST00000599342 SEC62Q99442 399 aaKnown RBP11.67□□□□□ -0.54
VRK3-216ENST00000599342 NUP88Q99567 741 aaPredicted RBP11.67□□□□□ -0.54
VRK3-216ENST00000599342 GDF15Q99988 308 aa11.67□□□□□ -0.54
VRK3-216ENST00000599342 ZNF214Q9UL59 606 aaPredicted RBP11.67□□□□□ -0.54
VRK3-216ENST00000599342 PARP14Q460N5 1801 aa11.67□□□□□ -0.54
VRK3-216ENST00000599342 TTLL1O95922 423 aa11.66□□□□□ -0.54
VRK3-216ENST00000599342 IGHA2P01877 340 aa11.66□□□□□ -0.54
VRK3-216ENST00000599342 MYCNP04198 464 aaPredicted RBP11.66□□□□□ -0.54
VRK3-216ENST00000599342 BMP8BP34820 402 aa11.66□□□□□ -0.54
VRK3-216ENST00000599342 MAGEA10P43363 369 aaPredicted RBP11.66□□□□□ -0.54
VRK3-216ENST00000599342 PPARAQ07869 468 aa11.66□□□□□ -0.54
VRK3-216ENST00000599342 ANO1Q5XXA6 986 aa11.66□□□□□ -0.54
VRK3-216ENST00000599342 PRPF38AQ8NAV1 312 aaKnown RBP11.66□□□□□ -0.54
VRK3-216ENST00000599342 CEP95Q96GE4 821 aa11.66□□□□□ -0.54
VRK3-216ENST00000599342 TEX13BQ9BXU2 312 aa11.66□□□□□ -0.54
VRK3-216ENST00000599342 MTMR4Q9NYA4 1195 aa11.66□□□□□ -0.54
VRK3-216ENST00000599342 ISY1Q9ULR0 285 aaKnown RBP11.66□□□□□ -0.54
VRK3-216ENST00000599342 SYNPO2Q9UMS6 1093 aa11.66□□□□□ -0.54
VRK3-216ENST00000599342 PLIN4Q96Q06 1357 aa11.66□□□□□ -0.54
VRK3-216ENST00000599342 COL11A1P12107 1806 aaPredicted RBP11.65□□□□□ -0.54
VRK3-216ENST00000599342 IGKV6D-41A0A0C4DH26 115 aa11.65□□□□□ -0.54
VRK3-216ENST00000599342 ZBED4O75132 1171 aa11.65□□□□□ -0.54
VRK3-216ENST00000599342 PGK2P07205 417 aa11.65□□□□□ -0.54
VRK3-216ENST00000599342 ATN1P54259 1190 aaPredicted RBP11.65□□□□□ -0.54
VRK3-216ENST00000599342 PPP4R3BQ5MIZ7 849 aa11.65□□□□□ -0.54
VRK3-216ENST00000599342 PRAMEF19Q5SWL8 479 aa11.65□□□□□ -0.54
VRK3-216ENST00000599342 GJC2Q5T442 439 aaPredicted RBP11.65□□□□□ -0.54
VRK3-216ENST00000599342 SNRNP48Q6IEG0 339 aaKnown RBP11.65□□□□□ -0.54
VRK3-216ENST00000599342 LRRC47Q8N1G4 583 aaKnown RBP11.65□□□□□ -0.54
VRK3-216ENST00000599342 REPS2Q8NFH8 660 aa11.65□□□□□ -0.54
VRK3-216ENST00000599342 KIFC2Q96AC6 838 aa11.65□□□□□ -0.54
VRK3-216ENST00000599342 EVI5LQ96CN4 794 aa11.65□□□□□ -0.54
VRK3-216ENST00000599342 UBE2OQ9C0C9 1292 aaKnown RBP11.65□□□□□ -0.54
VRK3-216ENST00000599342 PRKAG2Q9UGJ0 569 aa11.65□□□□□ -0.54
VRK3-216ENST00000599342 NRBP1Q9UHY1 535 aa11.65□□□□□ -0.54
VRK3-216ENST00000599342 FEM1BQ9UK73 627 aa11.65□□□□□ -0.54
VRK3-216ENST00000599342 DIS3Q9Y2L1 958 aaKnown RBP11.65□□□□□ -0.54
VRK3-216ENST00000599342 SALL3Q9BXA9 1300 aa11.64□□□□□ -0.55
VRK3-216ENST00000599342 RARBP10826 455 aa11.64□□□□□ -0.55
VRK3-216ENST00000599342 SLC4A3P48751 1232 aa11.64□□□□□ -0.55
VRK3-216ENST00000599342 TFAP4Q01664 338 aa11.64□□□□□ -0.55
VRK3-216ENST00000599342 HDAC1Q13547 482 aaPredicted RBP11.64□□□□□ -0.55
VRK3-216ENST00000599342 ZNF792Q3KQV3 632 aa11.64□□□□□ -0.55
VRK3-216ENST00000599342 FAM47AQ5JRC9 791 aa11.64□□□□□ -0.55
VRK3-216ENST00000599342 CCDC129Q6ZRS4 1044 aa11.64□□□□□ -0.55
VRK3-216ENST00000599342 TDHQ8IZJ6 230 aa11.64□□□□□ -0.55
VRK3-216ENST00000599342 CPXCR1Q8N123 301 aa11.64□□□□□ -0.55
VRK3-216ENST00000599342 GMCL1P1Q8NEA9 526 aa11.64□□□□□ -0.55
VRK3-216ENST00000599342 NEDD1Q8NHV4 660 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms