RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 KBTBD3Q8NAB2 608 aa28.69■■■□□ 2.18
LSM4-202ENST00000593564 GPATCH3Q96I76 525 aa28.69■■■□□ 2.18
LSM4-202ENST00000593564 GNL3Q9BVP2 549 aaKnown RBP eCLIP28.69■■■□□ 2.18
LSM4-202ENST00000593564 DCTPP1Q9H773 170 aa28.69■■■□□ 2.18
LSM4-202ENST00000593564 PARP14Q460N5 1801 aa28.69■■■□□ 2.18
LSM4-202ENST00000593564 SEPT4O43236 478 aa28.68■■■□□ 2.18
LSM4-202ENST00000593564 ARRDC4Q8NCT1 418 aa28.68■■■□□ 2.18
LSM4-202ENST00000593564 FBXO28Q9NVF7 368 aa28.68■■■□□ 2.18
LSM4-202ENST00000593564 MAML3Q96JK9 1138 aa28.67■■■□□ 2.18
LSM4-202ENST00000593564 PPP1R9AQ9ULJ8 1098 aa28.67■■■□□ 2.18
LSM4-202ENST00000593564 GSG1L2A8MUP6 293 aa28.66■■■□□ 2.18
LSM4-202ENST00000593564 VWA5AO00534 786 aa28.66■■■□□ 2.18
LSM4-202ENST00000593564 ATN1P54259 1190 aaPredicted RBP28.66■■■□□ 2.18
LSM4-202ENST00000593564 MDM2Q00987 491 aaPredicted RBP28.66■■■□□ 2.18
LSM4-202ENST00000593564 RIOX2Q8IUF8 465 aa28.66■■■□□ 2.18
LSM4-202ENST00000593564 APPBP2Q92624 585 aa28.66■■■□□ 2.18
LSM4-202ENST00000593564 OSBP2Q969R2 916 aa28.66■■■□□ 2.18
LSM4-202ENST00000593564 ROBO3Q96MS0 1386 aa28.65■■■□□ 2.18
LSM4-202ENST00000593564 RASA1P20936 1047 aa28.65■■■□□ 2.18
LSM4-202ENST00000593564 FAM83BQ5T0W9 1011 aa28.65■■■□□ 2.18
LSM4-202ENST00000593564 GJC2Q5T442 439 aaPredicted RBP28.65■■■□□ 2.18
LSM4-202ENST00000593564 COL6A3P12111 3177 aa28.64■■■□□ 2.18
LSM4-202ENST00000593564 KBTBD13C9JR72 458 aa28.64■■■□□ 2.18
LSM4-202ENST00000593564 RNF113AO15541 343 aaKnown RBP28.64■■■□□ 2.18
LSM4-202ENST00000593564 STAT3P40763 770 aa28.64■■■□□ 2.18
LSM4-202ENST00000593564 REPS2Q8NFH8 660 aa28.64■■■□□ 2.18
LSM4-202ENST00000593564 MMP19Q99542 508 aa28.64■■■□□ 2.18
LSM4-202ENST00000593564 NRBP1Q9UHY1 535 aa28.64■■■□□ 2.18
LSM4-202ENST00000593564 ZNF214Q9UL59 606 aaPredicted RBP28.64■■■□□ 2.18
LSM4-202ENST00000593564 GREB1LQ9C091 1923 aaPredicted RBP28.64■■■□□ 2.18
LSM4-202ENST00000593564 RAD21O60216 631 aa28.63■■■□□ 2.17
LSM4-202ENST00000593564 ZFYP08048 801 aaPredicted RBP28.63■■■□□ 2.17
LSM4-202ENST00000593564 COPB2P35606 906 aa28.63■■■□□ 2.17
LSM4-202ENST00000593564 RTP1P59025 263 aa28.63■■■□□ 2.17
LSM4-202ENST00000593564 PRAMEF19Q5SWL8 479 aa28.63■■■□□ 2.17
LSM4-202ENST00000593564 ANO1Q5XXA6 986 aa28.63■■■□□ 2.17
LSM4-202ENST00000593564 TSHZ3Q63HK5 1081 aa28.63■■■□□ 2.17
LSM4-202ENST00000593564 MKNK2Q9HBH9 465 aa28.63■■■□□ 2.17
LSM4-202ENST00000593564 NYAP2Q9P242 653 aa28.63■■■□□ 2.17
LSM4-202ENST00000593564 LBHD1Q9BQE6 289 aaPredicted RBP28.62■■■□□ 2.17
LSM4-202ENST00000593564 DIS3Q9Y2L1 958 aaKnown RBP28.62■■■□□ 2.17
LSM4-202ENST00000593564 MINDY4BA8MYZ0 360 aa28.61■■■□□ 2.17
LSM4-202ENST00000593564 GPAA1O43292 621 aa28.61■■■□□ 2.17
LSM4-202ENST00000593564 GNAT2P19087 354 aa28.61■■■□□ 2.17
LSM4-202ENST00000593564 KCTD2Q14681 263 aa28.61■■■□□ 2.17
LSM4-202ENST00000593564 DEFB123Q8N688 67 aa28.61■■■□□ 2.17
LSM4-202ENST00000593564 EPB41L4AQ9HCS5 686 aaPredicted RBP28.61■■■□□ 2.17
LSM4-202ENST00000593564 COL11A1P12107 1806 aaPredicted RBP28.61■■■□□ 2.17
LSM4-202ENST00000593564 SLC39A5Q6ZMH5 540 aa28.6■■■□□ 2.17
LSM4-202ENST00000593564 SLF1Q9BQI6 1058 aa28.6■■■□□ 2.17
LSM4-202ENST00000593564 PRKAG2Q9UGJ0 569 aa28.6■■■□□ 2.17
LSM4-202ENST00000593564 F5H6K3 240 aa28.59■■■□□ 2.17
LSM4-202ENST00000593564 PGK2P07205 417 aa28.59■■■□□ 2.17
LSM4-202ENST00000593564 KLRC3Q07444 240 aa28.59■■■□□ 2.17
LSM4-202ENST00000593564 SNX17Q15036 470 aa28.59■■■□□ 2.17
LSM4-202ENST00000593564 LRRC41Q15345 812 aa28.59■■■□□ 2.17
LSM4-202ENST00000593564 ZNF792Q3KQV3 632 aa28.59■■■□□ 2.17
LSM4-202ENST00000593564 FAM47AQ5JRC9 791 aa28.59■■■□□ 2.17
LSM4-202ENST00000593564 STK11IPQ8N1F8 1099 aa28.59■■■□□ 2.17
LSM4-202ENST00000593564 NUP88Q99567 741 aaPredicted RBP28.59■■■□□ 2.17
LSM4-202ENST00000593564 TINF2Q9BSI4 451 aa28.59■■■□□ 2.17
LSM4-202ENST00000593564 ATP11BQ9Y2G3 1177 aa28.59■■■□□ 2.17
LSM4-202ENST00000593564 IGKV6D-41A0A0C4DH26 115 aa28.58■■■□□ 2.17
LSM4-202ENST00000593564 NDUFB10O96000 172 aa28.58■■■□□ 2.17
LSM4-202ENST00000593564 TDO2P48775 406 aa28.58■■■□□ 2.17
LSM4-202ENST00000593564 LRRFIP1Q32MZ4 808 aaKnown RBP28.58■■■□□ 2.17
LSM4-202ENST00000593564 ZNF287Q9HBT7 754 aa28.58■■■□□ 2.17
LSM4-202ENST00000593564 ZNFX1Q9P2E3 1918 aaKnown RBP28.58■■■□□ 2.17
LSM4-202ENST00000593564 M0R2C6 588 aa28.57■■■□□ 2.16
LSM4-202ENST00000593564 MYCNP04198 464 aaPredicted RBP28.57■■■□□ 2.16
LSM4-202ENST00000593564 Q7L0L9 218 aa28.57■■■□□ 2.16
LSM4-202ENST00000593564 TEX13BQ9BXU2 312 aa28.57■■■□□ 2.16
LSM4-202ENST00000593564 TTC41PQ6P2S7 1318 aa28.57■■■□□ 2.16
LSM4-202ENST00000593564 RARBP10826 455 aa28.56■■■□□ 2.16
LSM4-202ENST00000593564 ADCYAP1R1P41586 468 aa28.56■■■□□ 2.16
LSM4-202ENST00000593564 C1orf53Q5VUE5 145 aa28.56■■■□□ 2.16
LSM4-202ENST00000593564 CLIP2Q9UDT6 1046 aa28.56■■■□□ 2.16
LSM4-202ENST00000593564 PATL2C9JE40 543 aaKnown RBP28.55■■■□□ 2.16
LSM4-202ENST00000593564 APPP05067 770 aa28.55■■■□□ 2.16
LSM4-202ENST00000593564 ZNF444Q8N0Y2 327 aaPredicted RBP28.55■■■□□ 2.16
LSM4-202ENST00000593564 PRPF38AQ8NAV1 312 aaKnown RBP28.55■■■□□ 2.16
LSM4-202ENST00000593564 SLC17A8Q8NDX2 589 aa28.55■■■□□ 2.16
LSM4-202ENST00000593564 XPNPEP3Q9NQH7 507 aa28.55■■■□□ 2.16
LSM4-202ENST00000593564 MTMR10Q9NXD2 777 aa28.55■■■□□ 2.16
LSM4-202ENST00000593564 SYNPO2Q9UMS6 1093 aa28.55■■■□□ 2.16
LSM4-202ENST00000593564 ATP2A1O14983 1001 aa28.54■■■□□ 2.16
LSM4-202ENST00000593564 ERC2O15083 957 aa28.54■■■□□ 2.16
LSM4-202ENST00000593564 PRDM1O75626 825 aa28.54■■■□□ 2.16
LSM4-202ENST00000593564 TRIM60Q495X7 471 aa28.54■■■□□ 2.16
LSM4-202ENST00000593564 SNRNP48Q6IEG0 339 aaKnown RBP28.54■■■□□ 2.16
LSM4-202ENST00000593564 MSL3Q8N5Y2 521 aaKnown RBP28.54■■■□□ 2.16
LSM4-202ENST00000593564 MKL1Q969V6 931 aa28.54■■■□□ 2.16
LSM4-202ENST00000593564 PHF24Q9UPV7 400 aa28.54■■■□□ 2.16
LSM4-202ENST00000593564 ZNF865P0CJ78 1059 aaPredicted RBP28.53■■■□□ 2.16
LSM4-202ENST00000593564 TAL1P17542 331 aaPredicted RBP28.53■■■□□ 2.16
LSM4-202ENST00000593564 IFNL3Q8IZI9 196 aa28.53■■■□□ 2.16
LSM4-202ENST00000593564 PI4K2BQ8TCG2 481 aa28.53■■■□□ 2.16
LSM4-202ENST00000593564 FERMT2Q96AC1 680 aa28.53■■■□□ 2.16
LSM4-202ENST00000593564 CEP95Q96GE4 821 aa28.53■■■□□ 2.16
LSM4-202ENST00000593564 NACAP1Q9BZK3 213 aa28.53■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms