RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 AOC2O75106 756 aa12.13□□□□□ -0.47
ZNF540-208ENST00000589857 WDHD1O75717 1129 aaPredicted RBP12.13□□□□□ -0.47
ZNF540-208ENST00000589857 DYNLL1P63167 89 aaKnown RBP12.13□□□□□ -0.47
ZNF540-208ENST00000589857 MYL5Q02045 173 aa12.13□□□□□ -0.47
ZNF540-208ENST00000589857 AOC3Q16853 763 aa12.13□□□□□ -0.47
ZNF540-208ENST00000589857 SHC4Q6S5L8 630 aa12.13□□□□□ -0.47
ZNF540-208ENST00000589857 TMTC3Q6ZXV5 915 aa12.13□□□□□ -0.47
ZNF540-208ENST00000589857 ADGRA1Q86SQ6 560 aa12.13□□□□□ -0.47
ZNF540-208ENST00000589857 MPNDQ8N594 471 aa12.13□□□□□ -0.47
ZNF540-208ENST00000589857 MYRIPQ8NFW9 859 aa12.13□□□□□ -0.47
ZNF540-208ENST00000589857 LZTS2Q9BRK4 669 aa12.13□□□□□ -0.47
ZNF540-208ENST00000589857 ZKSCAN3Q9BRR0 538 aa12.13□□□□□ -0.47
ZNF540-208ENST00000589857 DCP1AQ9NPI6 582 aaPredicted RBP12.13□□□□□ -0.47
ZNF540-208ENST00000589857 SH3GLB2Q9NR46 395 aa12.13□□□□□ -0.47
ZNF540-208ENST00000589857 SAGE1Q9NXZ1 904 aa12.13□□□□□ -0.47
ZNF540-208ENST00000589857 SRPRBQ9Y5M8 271 aaKnown RBP12.13□□□□□ -0.47
ZNF540-208ENST00000589857 TSPY2A6NKD2 308 aa12.12□□□□□ -0.47
ZNF540-208ENST00000589857 BTBD18B2RXH4 712 aa12.12□□□□□ -0.47
ZNF540-208ENST00000589857 USP5P45974 858 aa12.12□□□□□ -0.47
ZNF540-208ENST00000589857 GMPSP49915 693 aaPredicted RBP12.12□□□□□ -0.47
ZNF540-208ENST00000589857 PPP4CP60510 307 aa12.12□□□□□ -0.47
ZNF540-208ENST00000589857 CXCL9Q07325 125 aa12.12□□□□□ -0.47
ZNF540-208ENST00000589857 GALNT17Q6IS24 598 aa12.12□□□□□ -0.47
ZNF540-208ENST00000589857 DGKHQ86XP1 1220 aa12.12□□□□□ -0.47
ZNF540-208ENST00000589857 SP8Q8IXZ3 490 aa12.12□□□□□ -0.47
ZNF540-208ENST00000589857 C2orf69Q8N8R5 385 aa12.12□□□□□ -0.47
ZNF540-208ENST00000589857 MLKLQ8NB16 471 aa12.12□□□□□ -0.47
ZNF540-208ENST00000589857 TBC1D22AQ8WUA7 517 aa12.12□□□□□ -0.47
ZNF540-208ENST00000589857 ZNF830Q96NB3 372 aaPredicted RBP12.12□□□□□ -0.47
ZNF540-208ENST00000589857 PHF20Q9BVI0 1012 aa12.12□□□□□ -0.47
ZNF540-208ENST00000589857 RTFDC1Q9BY42 306 aaPredicted RBP12.12□□□□□ -0.47
ZNF540-208ENST00000589857 OSBPL5Q9H0X9 879 aaPredicted RBP12.12□□□□□ -0.47
ZNF540-208ENST00000589857 KCNF1Q9H3M0 494 aa12.12□□□□□ -0.47
ZNF540-208ENST00000589857 KAT14Q9H8E8 782 aa12.12□□□□□ -0.47
ZNF540-208ENST00000589857 INCENPQ9NQS7 918 aa12.12□□□□□ -0.47
ZNF540-208ENST00000589857 AATFQ9NY61 560 aaKnown RBP eCLIP12.12□□□□□ -0.47
ZNF540-208ENST00000589857 TACC3Q9Y6A5 838 aa12.12□□□□□ -0.47
ZNF540-208ENST00000589857 ROBO3Q96MS0 1386 aa12.12□□□□□ -0.47
ZNF540-208ENST00000589857 CACNA1SQ13698 1873 aa12.12□□□□□ -0.47
ZNF540-208ENST00000589857 MROH7-TTC4A0A0A0MT08 1334 aa12.11□□□□□ -0.47
ZNF540-208ENST00000589857 GTF2F1P35269 517 aaKnown RBP eCLIP12.11□□□□□ -0.47
ZNF540-208ENST00000589857 KCNJ6P48051 423 aa12.11□□□□□ -0.47
ZNF540-208ENST00000589857 HUNKP57058 714 aa12.11□□□□□ -0.47
ZNF540-208ENST00000589857 CCDC112Q8NEF3 446 aa12.11□□□□□ -0.47
ZNF540-208ENST00000589857 CCDC148Q8NFR7 591 aa12.11□□□□□ -0.47
ZNF540-208ENST00000589857 ANKS1AQ92625 1134 aa12.11□□□□□ -0.47
ZNF540-208ENST00000589857 SMARCE1Q969G3 411 aa12.11□□□□□ -0.47
ZNF540-208ENST00000589857 KCND1Q9NSA2 647 aa12.11□□□□□ -0.47
ZNF540-208ENST00000589857 GJB4Q9NTQ9 266 aa12.11□□□□□ -0.47
ZNF540-208ENST00000589857 TCP11L1Q9NUJ3 509 aa12.11□□□□□ -0.47
ZNF540-208ENST00000589857 CNOT7Q9UIV1 285 aaKnown RBP12.11□□□□□ -0.47
ZNF540-208ENST00000589857 TSKSQ9UJT2 592 aa12.11□□□□□ -0.47
ZNF540-208ENST00000589857 FBXO2Q9UK22 296 aaPredicted RBP12.11□□□□□ -0.47
ZNF540-208ENST00000589857 PAXBP1Q9Y5B6 917 aa12.11□□□□□ -0.47
ZNF540-208ENST00000589857 SNED1Q8TER0 1413 aa12.11□□□□□ -0.47
ZNF540-208ENST00000589857 TROAPQ12815 778 aa12.1□□□□□ -0.47
ZNF540-208ENST00000589857 POSTNQ15063 836 aa12.1□□□□□ -0.47
ZNF540-208ENST00000589857 DPCR1Q3MIW9 517 aa12.1□□□□□ -0.47
ZNF540-208ENST00000589857 LRRC8AQ8IWT6 810 aa12.1□□□□□ -0.47
ZNF540-208ENST00000589857 CCDC12Q8WUD4 166 aaPredicted RBP12.1□□□□□ -0.47
ZNF540-208ENST00000589857 DPF2Q92785 391 aa12.1□□□□□ -0.47
ZNF540-208ENST00000589857 DCPSQ96C86 337 aaKnown RBP12.1□□□□□ -0.47
ZNF540-208ENST00000589857 GLIS2Q9BZE0 524 aaPredicted RBP12.1□□□□□ -0.47
ZNF540-208ENST00000589857 MCM9Q9NXL9 1143 aa12.1□□□□□ -0.47
ZNF540-208ENST00000589857 GGA1Q9UJY5 639 aa12.1□□□□□ -0.47
ZNF540-208ENST00000589857 PYCARDQ9ULZ3 195 aa12.1□□□□□ -0.47
ZNF540-208ENST00000589857 KCNJ14Q9UNX9 436 aa12.1□□□□□ -0.47
ZNF540-208ENST00000589857 IRS2Q9Y4H2 1338 aa12.1□□□□□ -0.47
ZNF540-208ENST00000589857 THSD7BQ9C0I4 1608 aa12.09□□□□□ -0.47
ZNF540-208ENST00000589857 SCG2P13521 617 aa12.09□□□□□ -0.47
ZNF540-208ENST00000589857 RPS12P25398 132 aaKnown RBP12.09□□□□□ -0.47
ZNF540-208ENST00000589857 PRDX5P30044 214 aa12.09□□□□□ -0.47
ZNF540-208ENST00000589857 GUCY1A2P33402 732 aa12.09□□□□□ -0.47
ZNF540-208ENST00000589857 TXLNAP40222 546 aa12.09□□□□□ -0.47
ZNF540-208ENST00000589857 FMR1Q06787 632 aaKnown RBP eCLIP12.09□□□□□ -0.47
ZNF540-208ENST00000589857 FUT2Q10981 343 aa12.09□□□□□ -0.47
ZNF540-208ENST00000589857 SEMA3FQ13275 785 aa12.09□□□□□ -0.47
ZNF540-208ENST00000589857 PPP4R3BQ5MIZ7 849 aa12.09□□□□□ -0.47
ZNF540-208ENST00000589857 C12orf60Q5U649 245 aa12.09□□□□□ -0.47
ZNF540-208ENST00000589857 RGMBQ6NW40 437 aa12.09□□□□□ -0.47
ZNF540-208ENST00000589857 ZNF444Q8N0Y2 327 aaPredicted RBP12.09□□□□□ -0.47
ZNF540-208ENST00000589857 STK11IPQ8N1F8 1099 aa12.09□□□□□ -0.47
ZNF540-208ENST00000589857 MKNK2Q9HBH9 465 aa12.09□□□□□ -0.47
ZNF540-208ENST00000589857 CABP5Q9NP86 173 aa12.09□□□□□ -0.47
ZNF540-208ENST00000589857 V9GY48 417 aaPredicted RBP12.09□□□□□ -0.47
ZNF540-208ENST00000589857 CNTNAP5Q8WYK1 1306 aa12.09□□□□□ -0.47
ZNF540-208ENST00000589857 RAD17O75943 681 aa12.08□□□□□ -0.48
ZNF540-208ENST00000589857 SERPINC1P01008 464 aa12.08□□□□□ -0.48
ZNF540-208ENST00000589857 SFPQP23246 707 aaKnown RBP eCLIP12.08□□□□□ -0.48
ZNF540-208ENST00000589857 NLRP5P59047 1200 aa12.08□□□□□ -0.48
ZNF540-208ENST00000589857 HSP90AA2PQ14568 343 aaPredicted RBP12.08□□□□□ -0.48
ZNF540-208ENST00000589857 PKN2Q16513 984 aaKnown RBP12.08□□□□□ -0.48
ZNF540-208ENST00000589857 PFKFB3Q16875 520 aaPredicted RBP12.08□□□□□ -0.48
ZNF540-208ENST00000589857 TPD52L1Q16890 204 aaPredicted RBP12.08□□□□□ -0.48
ZNF540-208ENST00000589857 TTC38Q5R3I4 469 aa12.08□□□□□ -0.48
ZNF540-208ENST00000589857 NT5DC1Q5TFE4 455 aa12.08□□□□□ -0.48
ZNF540-208ENST00000589857 NKX2-3Q8TAU0 364 aa12.08□□□□□ -0.48
ZNF540-208ENST00000589857 EYA3Q99504 573 aa12.08□□□□□ -0.48
ZNF540-208ENST00000589857 GTPBP4Q9BZE4 634 aaKnown RBP12.08□□□□□ -0.48
ZNF540-208ENST00000589857 PODXL2Q9NZ53 605 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms