RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 LRRC41Q15345 812 aa16.82■□□□□ 0.28
VMP1-209ENST00000588915 SPICE1Q8N0Z3 855 aa16.82■□□□□ 0.28
VMP1-209ENST00000588915 MIER1Q8N108 512 aa16.82■□□□□ 0.28
VMP1-209ENST00000588915 GOPCQ9HD26 462 aa16.82■□□□□ 0.28
VMP1-209ENST00000588915 ATP11BQ9Y2G3 1177 aa16.82■□□□□ 0.28
VMP1-209ENST00000588915 STAT3P40763 770 aa16.81■□□□□ 0.28
VMP1-209ENST00000588915 TINF2Q9BSI4 451 aa16.81■□□□□ 0.28
VMP1-209ENST00000588915 COG6Q9Y2V7 657 aa16.81■□□□□ 0.28
VMP1-209ENST00000588915 SLC4A4Q9Y6R1 1079 aa16.81■□□□□ 0.28
VMP1-209ENST00000588915 MYH8P13535 1937 aa16.8■□□□□ 0.28
VMP1-209ENST00000588915 VWA5AO00534 786 aa16.8■□□□□ 0.28
VMP1-209ENST00000588915 RARBP10826 455 aa16.8■□□□□ 0.28
VMP1-209ENST00000588915 ADCYAP1R1P41586 468 aa16.8■□□□□ 0.28
VMP1-209ENST00000588915 KCTD2Q14681 263 aa16.8■□□□□ 0.28
VMP1-209ENST00000588915 ZNF792Q3KQV3 632 aa16.8■□□□□ 0.28
VMP1-209ENST00000588915 SBK1Q52WX2 424 aa16.8■□□□□ 0.28
VMP1-209ENST00000588915 PRAMEF19Q5SWL8 479 aa16.8■□□□□ 0.28
VMP1-209ENST00000588915 GIMAP6Q6P9H5 292 aa16.8■□□□□ 0.28
VMP1-209ENST00000588915 CTR9Q6PD62 1173 aa16.8■□□□□ 0.28
VMP1-209ENST00000588915 CLEC10AQ8IUN9 316 aa16.8■□□□□ 0.28
VMP1-209ENST00000588915 MSL3Q8N5Y2 521 aaKnown RBP16.8■□□□□ 0.28
VMP1-209ENST00000588915 MMP19Q99542 508 aa16.8■□□□□ 0.28
VMP1-209ENST00000588915 ARPP21Q9UBL0 812 aaPredicted RBP16.8■□□□□ 0.28
VMP1-209ENST00000588915 PPP1R9AQ9ULJ8 1098 aa16.8■□□□□ 0.28
VMP1-209ENST00000588915 PHF24Q9UPV7 400 aa16.8■□□□□ 0.28
VMP1-209ENST00000588915 ZNFX1Q9P2E3 1918 aaKnown RBP16.79■□□□□ 0.28
VMP1-209ENST00000588915 CYP2D7A0A087X1C5 515 aa16.79■□□□□ 0.28
VMP1-209ENST00000588915 SLFNL1Q499Z3 407 aa16.79■□□□□ 0.28
VMP1-209ENST00000588915 ANO1Q5XXA6 986 aa16.79■□□□□ 0.28
VMP1-209ENST00000588915 RNF180Q86T96 592 aa16.79■□□□□ 0.28
VMP1-209ENST00000588915 LRRCC1Q9C099 1032 aa16.79■□□□□ 0.28
VMP1-209ENST00000588915 ZNF214Q9UL59 606 aaPredicted RBP16.79■□□□□ 0.28
VMP1-209ENST00000588915 TACC3Q9Y6A5 838 aa16.79■□□□□ 0.28
VMP1-209ENST00000588915 ROBO3Q96MS0 1386 aa16.78■□□□□ 0.28
VMP1-209ENST00000588915 BAZ2AQ9UIF9 1905 aaKnown RBP16.78■□□□□ 0.28
VMP1-209ENST00000588915 FAM47AQ5JRC9 791 aa16.78■□□□□ 0.28
VMP1-209ENST00000588915 ZNF697Q5TEC3 545 aa16.78■□□□□ 0.28
VMP1-209ENST00000588915 REPS2Q8NFH8 660 aa16.78■□□□□ 0.28
VMP1-209ENST00000588915 PUS7LQ9H0K6 701 aaKnown RBP16.78■□□□□ 0.28
VMP1-209ENST00000588915 XPNPEP3Q9NQH7 507 aa16.78■□□□□ 0.28
VMP1-209ENST00000588915 PDLIM7Q9NR12 457 aa16.78■□□□□ 0.28
VMP1-209ENST00000588915 FBXO28Q9NVF7 368 aa16.78■□□□□ 0.28
VMP1-209ENST00000588915 NYAP2Q9P242 653 aa16.78■□□□□ 0.28
VMP1-209ENST00000588915 PARP14Q460N5 1801 aa16.77■□□□□ 0.28
VMP1-209ENST00000588915 SMIM22K7EJ46 135 aa16.77■□□□□ 0.28
VMP1-209ENST00000588915 AKR1A1P14550 325 aa16.77■□□□□ 0.28
VMP1-209ENST00000588915 SHHQ15465 462 aa16.77■□□□□ 0.28
VMP1-209ENST00000588915 TRIM60Q495X7 471 aa16.77■□□□□ 0.28
VMP1-209ENST00000588915 GUCD1Q96NT3 240 aa16.77■□□□□ 0.28
VMP1-209ENST00000588915 STRBPQ96SI9 672 aaKnown RBP16.77■□□□□ 0.28
VMP1-209ENST00000588915 TSEN34Q9BSV6 310 aaKnown RBP16.77■□□□□ 0.28
VMP1-209ENST00000588915 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.77■□□□□ 0.28
VMP1-209ENST00000588915 PRDM5Q9NQX1 630 aaPredicted RBP16.77■□□□□ 0.28
VMP1-209ENST00000588915 CUL9Q8IWT3 2517 aa16.77■□□□□ 0.28
VMP1-209ENST00000588915 SMCHD1A6NHR9 2005 aa16.77■□□□□ 0.27
VMP1-209ENST00000588915 LTBP2Q14767 1821 aa16.76■□□□□ 0.27
VMP1-209ENST00000588915 ATP2A1O14983 1001 aa16.76■□□□□ 0.27
VMP1-209ENST00000588915 MYCNP04198 464 aaPredicted RBP16.76■□□□□ 0.27
VMP1-209ENST00000588915 ZNF865P0CJ78 1059 aaPredicted RBP16.76■□□□□ 0.27
VMP1-209ENST00000588915 SMAD3P84022 425 aaKnown RBP16.76■□□□□ 0.27
VMP1-209ENST00000588915 TLE2Q04725 743 aa16.76■□□□□ 0.27
VMP1-209ENST00000588915 FAM83BQ5T0W9 1011 aa16.76■□□□□ 0.27
VMP1-209ENST00000588915 SAMD1Q6SPF0 538 aaPredicted RBP16.76■□□□□ 0.27
VMP1-209ENST00000588915 BADQ92934 168 aa16.76■□□□□ 0.27
VMP1-209ENST00000588915 FERMT2Q96AC1 680 aa16.76■□□□□ 0.27
VMP1-209ENST00000588915 SLF1Q9BQI6 1058 aa16.76■□□□□ 0.27
VMP1-209ENST00000588915 TEX13BQ9BXU2 312 aa16.76■□□□□ 0.27
VMP1-209ENST00000588915 BCL11AQ9H165 835 aa16.76■□□□□ 0.27
VMP1-209ENST00000588915 ZNF287Q9HBT7 754 aa16.76■□□□□ 0.27
VMP1-209ENST00000588915 SYNPO2Q9UMS6 1093 aa16.76■□□□□ 0.27
VMP1-209ENST00000588915 CNPY2Q9Y2B0 182 aa16.76■□□□□ 0.27
VMP1-209ENST00000588915 SYNGAP1Q96PV0 1343 aa16.75■□□□□ 0.27
VMP1-209ENST00000588915 MYH7P12883 1935 aa16.75■□□□□ 0.27
VMP1-209ENST00000588915 TRIM43BA6NCK2 446 aa16.75■□□□□ 0.27
VMP1-209ENST00000588915 CHGBP05060 677 aa16.75■□□□□ 0.27
VMP1-209ENST00000588915 PGK2P07205 417 aa16.75■□□□□ 0.27
VMP1-209ENST00000588915 DIEXFQ68CQ4 756 aaKnown RBP16.75■□□□□ 0.27
VMP1-209ENST00000588915 MAMDC4Q6UXC1 1216 aa16.75■□□□□ 0.27
VMP1-209ENST00000588915 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.75■□□□□ 0.27
VMP1-209ENST00000588915 KBTBD3Q8NAB2 608 aa16.75■□□□□ 0.27
VMP1-209ENST00000588915 PRPF38AQ8NAV1 312 aaKnown RBP16.75■□□□□ 0.27
VMP1-209ENST00000588915 TRIM43Q96BQ3 446 aaPredicted RBP16.75■□□□□ 0.27
VMP1-209ENST00000588915 TOX2Q96NM4 488 aa16.75■□□□□ 0.27
VMP1-209ENST00000588915 MKNK2Q9HBH9 465 aa16.75■□□□□ 0.27
VMP1-209ENST00000588915 ECHDC1Q9NTX5 307 aa16.75■□□□□ 0.27
VMP1-209ENST00000588915 LAMA2P24043 3122 aaKnown RBP16.74■□□□□ 0.27
VMP1-209ENST00000588915 GSG1L2A8MUP6 293 aa16.74■□□□□ 0.27
VMP1-209ENST00000588915 F5H6K3 240 aa16.74■□□□□ 0.27
VMP1-209ENST00000588915 KIAA0355O15063 1070 aa16.74■□□□□ 0.27
VMP1-209ENST00000588915 CLTBP09497 229 aa16.74■□□□□ 0.27
VMP1-209ENST00000588915 RASA1P20936 1047 aa16.74■□□□□ 0.27
VMP1-209ENST00000588915 KLRC3Q07444 240 aa16.74■□□□□ 0.27
VMP1-209ENST00000588915 C9orf50Q5SZB4 431 aa16.74■□□□□ 0.27
VMP1-209ENST00000588915 ZNF467Q7Z7K2 595 aaPredicted RBP16.74■□□□□ 0.27
VMP1-209ENST00000588915 MKL1Q969V6 931 aa16.74■□□□□ 0.27
VMP1-209ENST00000588915 SEMA6BQ9H3T3 888 aa16.74■□□□□ 0.27
VMP1-209ENST00000588915 COL11A1P12107 1806 aaPredicted RBP16.74■□□□□ 0.27
VMP1-209ENST00000588915 DNAJC25-GNG10A0A024R161 153 aa16.73■□□□□ 0.27
VMP1-209ENST00000588915 A0A1W2PQ45 241 aaPredicted RBP16.73■□□□□ 0.27
VMP1-209ENST00000588915 A0A1W2PQY0 241 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms