RNA–Protein interactions for RNA: ENST00000587604.1

DNMT1-213, Transcript of DNA methyltransferase 1, humanhuman

TSL 2

Gene DNMT1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-213ENST00000587604 PRAMEF19Q5SWL8 479 aa16.93■□□□□ 0.3
DNMT1-213ENST00000587604 ANO1Q5XXA6 986 aa16.93■□□□□ 0.3
DNMT1-213ENST00000587604 C16orf86Q6ZW13 317 aa16.93■□□□□ 0.3
DNMT1-213ENST00000587604 DDRGK1Q96HY6 314 aa16.93■□□□□ 0.3
DNMT1-213ENST00000587604 MAML3Q96JK9 1138 aa16.93■□□□□ 0.3
DNMT1-213ENST00000587604 ATP11BQ9Y2G3 1177 aa16.93■□□□□ 0.3
DNMT1-213ENST00000587604 COG6Q9Y2V7 657 aa16.93■□□□□ 0.3
DNMT1-213ENST00000587604 COL11A1P12107 1806 aaPredicted RBP16.93■□□□□ 0.3
DNMT1-213ENST00000587604 CYP2D7A0A087X1C5 515 aa16.92■□□□□ 0.3
DNMT1-213ENST00000587604 CHMP4BQ9H444 224 aaKnown RBP16.92■□□□□ 0.3
DNMT1-213ENST00000587604 KANSL2Q9H9L4 492 aa16.92■□□□□ 0.3
DNMT1-213ENST00000587604 UNC80Q8N2C7 3258 aa16.91■□□□□ 0.3
DNMT1-213ENST00000587604 SMIM22K7EJ46 135 aa16.91■□□□□ 0.3
DNMT1-213ENST00000587604 EEF2P13639 858 aaKnown RBP16.91■□□□□ 0.3
DNMT1-213ENST00000587604 SNX17Q15036 470 aa16.91■□□□□ 0.3
DNMT1-213ENST00000587604 LRRC41Q15345 812 aa16.91■□□□□ 0.3
DNMT1-213ENST00000587604 SAMD1Q6SPF0 538 aaPredicted RBP16.91■□□□□ 0.3
DNMT1-213ENST00000587604 NRBP1Q9UHY1 535 aa16.91■□□□□ 0.3
DNMT1-213ENST00000587604 SLC4A4Q9Y6R1 1079 aa16.91■□□□□ 0.3
DNMT1-213ENST00000587604 LTBP2Q14767 1821 aa16.91■□□□□ 0.3
DNMT1-213ENST00000587604 MYCNP04198 464 aaPredicted RBP16.9■□□□□ 0.3
DNMT1-213ENST00000587604 CHGBP05060 677 aa16.9■□□□□ 0.3
DNMT1-213ENST00000587604 ADCYAP1R1P41586 468 aa16.9■□□□□ 0.3
DNMT1-213ENST00000587604 C1orf53Q5VUE5 145 aa16.9■□□□□ 0.3
DNMT1-213ENST00000587604 ZSCAN25Q6NSZ9 544 aa16.9■□□□□ 0.3
DNMT1-213ENST00000587604 CTR9Q6PD62 1173 aa16.9■□□□□ 0.3
DNMT1-213ENST00000587604 RIOX2Q8IUF8 465 aa16.9■□□□□ 0.3
DNMT1-213ENST00000587604 MMP19Q99542 508 aa16.9■□□□□ 0.3
DNMT1-213ENST00000587604 GOPCQ9HD26 462 aa16.9■□□□□ 0.3
DNMT1-213ENST00000587604 DIS3Q9Y2L1 958 aaKnown RBP16.9■□□□□ 0.3
DNMT1-213ENST00000587604 PLXNA1Q9UIW2 1896 aa16.9■□□□□ 0.3
DNMT1-213ENST00000587604 VWA5AO00534 786 aa16.89■□□□□ 0.29
DNMT1-213ENST00000587604 STAT3P40763 770 aa16.89■□□□□ 0.29
DNMT1-213ENST00000587604 TRIM60Q495X7 471 aa16.89■□□□□ 0.29
DNMT1-213ENST00000587604 FBXO28Q9NVF7 368 aa16.89■□□□□ 0.29
DNMT1-213ENST00000587604 PPP1R9AQ9ULJ8 1098 aa16.89■□□□□ 0.29
DNMT1-213ENST00000587604 PGK2P07205 417 aa16.88■□□□□ 0.29
DNMT1-213ENST00000587604 RARBP10826 455 aa16.88■□□□□ 0.29
DNMT1-213ENST00000587604 COPB2P35606 906 aa16.88■□□□□ 0.29
DNMT1-213ENST00000587604 KCTD2Q14681 263 aa16.88■□□□□ 0.29
DNMT1-213ENST00000587604 SHHQ15465 462 aa16.88■□□□□ 0.29
DNMT1-213ENST00000587604 ZNF792Q3KQV3 632 aa16.88■□□□□ 0.29
DNMT1-213ENST00000587604 FAM47AQ5JRC9 791 aa16.88■□□□□ 0.29
DNMT1-213ENST00000587604 FERMT2Q96AC1 680 aa16.88■□□□□ 0.29
DNMT1-213ENST00000587604 GUCD1Q96NT3 240 aa16.88■□□□□ 0.29
DNMT1-213ENST00000587604 TINF2Q9BSI4 451 aa16.88■□□□□ 0.29
DNMT1-213ENST00000587604 PUS7LQ9H0K6 701 aaKnown RBP16.88■□□□□ 0.29
DNMT1-213ENST00000587604 XPNPEP3Q9NQH7 507 aa16.88■□□□□ 0.29
DNMT1-213ENST00000587604 PRDM5Q9NQX1 630 aaPredicted RBP16.88■□□□□ 0.29
DNMT1-213ENST00000587604 PHF24Q9UPV7 400 aa16.88■□□□□ 0.29
DNMT1-213ENST00000587604 BADQ92934 168 aa16.87■□□□□ 0.29
DNMT1-213ENST00000587604 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.87■□□□□ 0.29
DNMT1-213ENST00000587604 LRRCC1Q9C099 1032 aa16.87■□□□□ 0.29
DNMT1-213ENST00000587604 PDLIM7Q9NR12 457 aa16.87■□□□□ 0.29
DNMT1-213ENST00000587604 ARPP21Q9UBL0 812 aaPredicted RBP16.87■□□□□ 0.29
DNMT1-213ENST00000587604 ZNF214Q9UL59 606 aaPredicted RBP16.87■□□□□ 0.29
DNMT1-213ENST00000587604 RAD21O60216 631 aa16.86■□□□□ 0.29
DNMT1-213ENST00000587604 SBK1Q52WX2 424 aa16.86■□□□□ 0.29
DNMT1-213ENST00000587604 C9orf50Q5SZB4 431 aa16.86■□□□□ 0.29
DNMT1-213ENST00000587604 FAM83BQ5T0W9 1011 aa16.86■□□□□ 0.29
DNMT1-213ENST00000587604 ZNF697Q5TEC3 545 aa16.86■□□□□ 0.29
DNMT1-213ENST00000587604 DIEXFQ68CQ4 756 aaKnown RBP16.86■□□□□ 0.29
DNMT1-213ENST00000587604 SH3RF1Q7Z6J0 888 aa16.86■□□□□ 0.29
DNMT1-213ENST00000587604 RNF180Q86T96 592 aa16.86■□□□□ 0.29
DNMT1-213ENST00000587604 REPS2Q8NFH8 660 aa16.86■□□□□ 0.29
DNMT1-213ENST00000587604 FAM161BQ96MY7 647 aa16.86■□□□□ 0.29
DNMT1-213ENST00000587604 STRBPQ96SI9 672 aaKnown RBP16.86■□□□□ 0.29
DNMT1-213ENST00000587604 TACC3Q9Y6A5 838 aa16.86■□□□□ 0.29
DNMT1-213ENST00000587604 TRIM43BA6NCK2 446 aa16.85■□□□□ 0.29
DNMT1-213ENST00000587604 PGK1P00558 417 aa16.85■□□□□ 0.29
DNMT1-213ENST00000587604 TLE2Q04725 743 aa16.85■□□□□ 0.29
DNMT1-213ENST00000587604 GIMAP6Q6P9H5 292 aa16.85■□□□□ 0.29
DNMT1-213ENST00000587604 TRIM43Q96BQ3 446 aaPredicted RBP16.85■□□□□ 0.29
DNMT1-213ENST00000587604 GREB1LQ9C091 1923 aaPredicted RBP16.85■□□□□ 0.29
DNMT1-213ENST00000587604 ZNF865P0CJ78 1059 aaPredicted RBP16.84■□□□□ 0.29
DNMT1-213ENST00000587604 AKR1A1P14550 325 aa16.84■□□□□ 0.29
DNMT1-213ENST00000587604 TAL1P17542 331 aaPredicted RBP16.84■□□□□ 0.29
DNMT1-213ENST00000587604 RASA1P20936 1047 aa16.84■□□□□ 0.29
DNMT1-213ENST00000587604 MSL3Q8N5Y2 521 aaKnown RBP16.84■□□□□ 0.29
DNMT1-213ENST00000587604 SLF1Q9BQI6 1058 aa16.84■□□□□ 0.29
DNMT1-213ENST00000587604 TEX13BQ9BXU2 312 aa16.84■□□□□ 0.29
DNMT1-213ENST00000587604 MKNK2Q9HBH9 465 aa16.84■□□□□ 0.29
DNMT1-213ENST00000587604 ECHDC1Q9NTX5 307 aa16.84■□□□□ 0.29
DNMT1-213ENST00000587604 NYAP2Q9P242 653 aa16.84■□□□□ 0.29
DNMT1-213ENST00000587604 CNPY2Q9Y2B0 182 aa16.84■□□□□ 0.29
DNMT1-213ENST00000587604 ROBO3Q96MS0 1386 aa16.84■□□□□ 0.29
DNMT1-213ENST00000587604 GSG1L2A8MUP6 293 aa16.83■□□□□ 0.28
DNMT1-213ENST00000587604 F5H6K3 240 aa16.83■□□□□ 0.28
DNMT1-213ENST00000587604 SMARCA5O60264 1052 aaPredicted RBP16.83■□□□□ 0.28
DNMT1-213ENST00000587604 SMAD3P84022 425 aaKnown RBP16.83■□□□□ 0.28
DNMT1-213ENST00000587604 KLRC3Q07444 240 aa16.83■□□□□ 0.28
DNMT1-213ENST00000587604 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.83■□□□□ 0.28
DNMT1-213ENST00000587604 PRPF38AQ8NAV1 312 aaKnown RBP16.83■□□□□ 0.28
DNMT1-213ENST00000587604 TSEN34Q9BSV6 310 aaKnown RBP16.83■□□□□ 0.28
DNMT1-213ENST00000587604 CDH23Q9H251 3354 aa16.83■□□□□ 0.28
DNMT1-213ENST00000587604 SEMA6BQ9H3T3 888 aa16.83■□□□□ 0.28
DNMT1-213ENST00000587604 MINDY4BA8MYZ0 360 aa16.82■□□□□ 0.28
DNMT1-213ENST00000587604 CLTBP09497 229 aa16.82■□□□□ 0.28
DNMT1-213ENST00000587604 ITGB8P26012 769 aa16.82■□□□□ 0.28
DNMT1-213ENST00000587604 SNRNP48Q6IEG0 339 aaKnown RBP16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms