RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-222ENST00000582792 TRIM43Q96BQ3 446 aaPredicted RBP16.36■□□□□ 0.21
SS18-222ENST00000582792 CCDC17Q96LX7 622 aa16.36■□□□□ 0.21
SS18-222ENST00000582792 CDX2Q99626 313 aaPredicted RBP16.36■□□□□ 0.21
SS18-222ENST00000582792 SEMA6BQ9H3T3 888 aa16.36■□□□□ 0.21
SS18-222ENST00000582792 NRBP1Q9UHY1 535 aa16.36■□□□□ 0.21
SS18-222ENST00000582792 ADAMTS5Q9UNA0 930 aa16.36■□□□□ 0.21
SS18-222ENST00000582792 ZNFX1Q9P2E3 1918 aaKnown RBP16.36■□□□□ 0.21
SS18-222ENST00000582792 COL11A1P12107 1806 aaPredicted RBP16.35■□□□□ 0.21
SS18-222ENST00000582792 BAZ2AQ9UIF9 1905 aaKnown RBP16.35■□□□□ 0.21
SS18-222ENST00000582792 PRKAB2O43741 272 aa16.35■□□□□ 0.21
SS18-222ENST00000582792 MBD4O95243 580 aa16.35■□□□□ 0.21
SS18-222ENST00000582792 IFIT2P09913 472 aaKnown RBP16.35■□□□□ 0.21
SS18-222ENST00000582792 ADD2P35612 726 aa16.35■□□□□ 0.21
SS18-222ENST00000582792 SMAD3P84022 425 aaKnown RBP16.35■□□□□ 0.21
SS18-222ENST00000582792 PANK1Q8TE04 598 aa16.35■□□□□ 0.21
SS18-222ENST00000582792 XPNPEP3Q9NQH7 507 aa16.35■□□□□ 0.21
SS18-222ENST00000582792 PHF24Q9UPV7 400 aa16.35■□□□□ 0.21
SS18-222ENST00000582792 APBB1O00213 710 aa16.34■□□□□ 0.21
SS18-222ENST00000582792 RARBP10826 455 aa16.34■□□□□ 0.21
SS18-222ENST00000582792 CDK8P49336 464 aa16.34■□□□□ 0.21
SS18-222ENST00000582792 TLE2Q04725 743 aa16.34■□□□□ 0.21
SS18-222ENST00000582792 C12orf60Q5U649 245 aa16.34■□□□□ 0.21
SS18-222ENST00000582792 SAMD1Q6SPF0 538 aaPredicted RBP16.34■□□□□ 0.21
SS18-222ENST00000582792 C16orf86Q6ZW13 317 aa16.34■□□□□ 0.21
SS18-222ENST00000582792 RIOX2Q8IUF8 465 aa16.34■□□□□ 0.21
SS18-222ENST00000582792 MMP19Q99542 508 aa16.34■□□□□ 0.21
SS18-222ENST00000582792 PAG1Q9NWQ8 432 aa16.34■□□□□ 0.21
SS18-222ENST00000582792 DIS3Q9Y2L1 958 aaKnown RBP16.34■□□□□ 0.21
SS18-222ENST00000582792 SMCHD1A6NHR9 2005 aa16.34■□□□□ 0.21
SS18-222ENST00000582792 ROBO3Q96MS0 1386 aa16.34■□□□□ 0.21
SS18-222ENST00000582792 SPTBN5Q9NRC6 3674 aaKnown RBP16.34■□□□□ 0.21
SS18-222ENST00000582792 PLXNA1Q9UIW2 1896 aa16.33■□□□□ 0.21
SS18-222ENST00000582792 CYP2D7A0A087X1C5 515 aa16.33■□□□□ 0.2
SS18-222ENST00000582792 SMIM22K7EJ46 135 aa16.33■□□□□ 0.2
SS18-222ENST00000582792 EEF2P13639 858 aaKnown RBP16.33■□□□□ 0.2
SS18-222ENST00000582792 ZNF792Q3KQV3 632 aa16.33■□□□□ 0.2
SS18-222ENST00000582792 SLFNL1Q499Z3 407 aa16.33■□□□□ 0.2
SS18-222ENST00000582792 RNF180Q86T96 592 aa16.33■□□□□ 0.2
SS18-222ENST00000582792 AMOTL1Q8IY63 956 aa16.33■□□□□ 0.2
SS18-222ENST00000582792 MAFAQ8NHW3 353 aaPredicted RBP16.33■□□□□ 0.2
SS18-222ENST00000582792 TINF2Q9BSI4 451 aa16.33■□□□□ 0.2
SS18-222ENST00000582792 TTYH1Q9H313 450 aaPredicted RBP16.33■□□□□ 0.2
SS18-222ENST00000582792 FBXO28Q9NVF7 368 aa16.33■□□□□ 0.2
SS18-222ENST00000582792 RCAN3Q9UKA8 241 aa16.33■□□□□ 0.2
SS18-222ENST00000582792 TACC3Q9Y6A5 838 aa16.33■□□□□ 0.2
SS18-222ENST00000582792 USP17L12C9JPN9 530 aa16.32■□□□□ 0.2
SS18-222ENST00000582792 USP17L21D6R901 530 aa16.32■□□□□ 0.2
SS18-222ENST00000582792 VWA5AO00534 786 aa16.32■□□□□ 0.2
SS18-222ENST00000582792 PGK2P07205 417 aa16.32■□□□□ 0.2
SS18-222ENST00000582792 CLTBP09497 229 aa16.32■□□□□ 0.2
SS18-222ENST00000582792 ITGB8P26012 769 aa16.32■□□□□ 0.2
SS18-222ENST00000582792 STAT3P40763 770 aa16.32■□□□□ 0.2
SS18-222ENST00000582792 KCTD2Q14681 263 aa16.32■□□□□ 0.2
SS18-222ENST00000582792 RPAP2Q8IXW5 612 aaPredicted RBP16.32■□□□□ 0.2
SS18-222ENST00000582792 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.32■□□□□ 0.2
SS18-222ENST00000582792 BOLA2Q9H3K6 86 aa16.32■□□□□ 0.2
SS18-222ENST00000582792 KANSL2Q9H9L4 492 aa16.32■□□□□ 0.2
SS18-222ENST00000582792 ZNF214Q9UL59 606 aaPredicted RBP16.32■□□□□ 0.2
SS18-222ENST00000582792 PPP1R9AQ9ULJ8 1098 aa16.32■□□□□ 0.2
SS18-222ENST00000582792 A0A1W2PQ45 241 aaPredicted RBP16.31■□□□□ 0.2
SS18-222ENST00000582792 A0A1W2PQY0 241 aa16.31■□□□□ 0.2
SS18-222ENST00000582792 RAB11FIP3O75154 756 aa16.31■□□□□ 0.2
SS18-222ENST00000582792 HMMRO75330 724 aa16.31■□□□□ 0.2
SS18-222ENST00000582792 PGK1P00558 417 aa16.31■□□□□ 0.2
SS18-222ENST00000582792 TAL1P17542 331 aaPredicted RBP16.31■□□□□ 0.2
SS18-222ENST00000582792 ATP5JP18859 108 aa16.31■□□□□ 0.2
SS18-222ENST00000582792 COPB2P35606 906 aa16.31■□□□□ 0.2
SS18-222ENST00000582792 SIRT2Q8IXJ6 389 aa16.31■□□□□ 0.2
SS18-222ENST00000582792 REPS2Q8NFH8 660 aa16.31■□□□□ 0.2
SS18-222ENST00000582792 MYLIPQ8WY64 445 aa16.31■□□□□ 0.2
SS18-222ENST00000582792 DDRGK1Q96HY6 314 aa16.31■□□□□ 0.2
SS18-222ENST00000582792 GOPCQ9HD26 462 aa16.31■□□□□ 0.2
SS18-222ENST00000582792 MYH7P12883 1935 aa16.3■□□□□ 0.2
SS18-222ENST00000582792 TMEM265A0A087WTH1 108 aa16.3■□□□□ 0.2
SS18-222ENST00000582792 KIAA0355O15063 1070 aa16.3■□□□□ 0.2
SS18-222ENST00000582792 ZNF865P0CJ78 1059 aaPredicted RBP16.3■□□□□ 0.2
SS18-222ENST00000582792 AKR1A1P14550 325 aa16.3■□□□□ 0.2
SS18-222ENST00000582792 UBE3CQ15386 1083 aa16.3■□□□□ 0.2
SS18-222ENST00000582792 FAM83BQ5T0W9 1011 aa16.3■□□□□ 0.2
SS18-222ENST00000582792 RNPC3Q96LT9 517 aaKnown RBP16.3■□□□□ 0.2
SS18-222ENST00000582792 HAUS7Q99871 368 aa16.3■□□□□ 0.2
SS18-222ENST00000582792 BCL11AQ9H165 835 aa16.3■□□□□ 0.2
SS18-222ENST00000582792 PQBP1O60828 265 aaKnown RBP16.29■□□□□ 0.2
SS18-222ENST00000582792 ADAMTS4O75173 837 aa16.29■□□□□ 0.2
SS18-222ENST00000582792 CHGBP05060 677 aa16.29■□□□□ 0.2
SS18-222ENST00000582792 MS4A1P11836 297 aa16.29■□□□□ 0.2
SS18-222ENST00000582792 RAG1P15918 1043 aa16.29■□□□□ 0.2
SS18-222ENST00000582792 EPHB4P54760 987 aa16.29■□□□□ 0.2
SS18-222ENST00000582792 CTR9Q6PD62 1173 aa16.29■□□□□ 0.2
SS18-222ENST00000582792 TSEN34Q9BSV6 310 aaKnown RBP16.29■□□□□ 0.2
SS18-222ENST00000582792 CNPY2Q9Y2B0 182 aa16.29■□□□□ 0.2
SS18-222ENST00000582792 SLC4A4Q9Y6R1 1079 aa16.29■□□□□ 0.2
SS18-222ENST00000582792 GREB1LQ9C091 1923 aaPredicted RBP16.29■□□□□ 0.2
SS18-222ENST00000582792 RAD21O60216 631 aa16.28■□□□□ 0.2
SS18-222ENST00000582792 ANKRD33Q7Z3H0 272 aa16.28■□□□□ 0.2
SS18-222ENST00000582792 MSL3Q8N5Y2 521 aaKnown RBP16.28■□□□□ 0.2
SS18-222ENST00000582792 LENG1Q96BZ8 264 aaPredicted RBP16.28■□□□□ 0.2
SS18-222ENST00000582792 TOX2Q96NM4 488 aa16.28■□□□□ 0.2
SS18-222ENST00000582792 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.28■□□□□ 0.2
SS18-222ENST00000582792 ZBTB40Q9NUA8 1239 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms