RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 DDX41Q9UJV9 622 aaKnown RBP11.9□□□□□ -0.5
TOP3A-209ENST00000580095 GDAQ9Y2T3 454 aa11.9□□□□□ -0.5
TOP3A-209ENST00000580095 KIF2AO00139 706 aaPredicted RBP11.9□□□□□ -0.51
TOP3A-209ENST00000580095 ARHGAP6O43182 974 aa11.9□□□□□ -0.51
TOP3A-209ENST00000580095 DDAH1O94760 285 aa11.9□□□□□ -0.51
TOP3A-209ENST00000580095 TM4SF1P30408 202 aa11.9□□□□□ -0.51
TOP3A-209ENST00000580095 RCAN1P53805 252 aa11.9□□□□□ -0.51
TOP3A-209ENST00000580095 SYCP1Q15431 976 aa11.9□□□□□ -0.51
TOP3A-209ENST00000580095 KANK3Q6NY19 840 aa11.9□□□□□ -0.51
TOP3A-209ENST00000580095 TPTE2Q6XPS3 522 aa11.9□□□□□ -0.51
TOP3A-209ENST00000580095 HEATR3Q7Z4Q2 680 aa11.9□□□□□ -0.51
TOP3A-209ENST00000580095 CERS3Q8IU89 383 aa11.9□□□□□ -0.51
TOP3A-209ENST00000580095 RASSF8Q8NHQ8 419 aa11.9□□□□□ -0.51
TOP3A-209ENST00000580095 MTA3Q9BTC8 594 aa11.9□□□□□ -0.51
TOP3A-209ENST00000580095 CCNL1Q9UK58 526 aaPredicted RBP11.9□□□□□ -0.51
TOP3A-209ENST00000580095 NRAPQ86VF7 1730 aa11.9□□□□□ -0.51
TOP3A-209ENST00000580095 BCORQ6W2J9 1755 aa11.89□□□□□ -0.51
TOP3A-209ENST00000580095 PLCH1Q4KWH8 1693 aa11.89□□□□□ -0.51
TOP3A-209ENST00000580095 ABL1P00519 1130 aa11.89□□□□□ -0.51
TOP3A-209ENST00000580095 FGRP09769 529 aa11.89□□□□□ -0.51
TOP3A-209ENST00000580095 ATP2C1P98194 919 aaPredicted RBP11.89□□□□□ -0.51
TOP3A-209ENST00000580095 NARFQ9UHQ1 456 aa11.89□□□□□ -0.51
TOP3A-209ENST00000580095 PARP3Q9Y6F1 533 aa11.89□□□□□ -0.51
TOP3A-209ENST00000580095 DUOX1Q9NRD9 1551 aa11.89□□□□□ -0.51
TOP3A-209ENST00000580095 SRCAPQ6ZRS2 3230 aa11.89□□□□□ -0.51
TOP3A-209ENST00000580095 RNF225M0QZC1 329 aaPredicted RBP11.89□□□□□ -0.51
TOP3A-209ENST00000580095 CALM1P0DP23 149 aa11.89□□□□□ -0.51
TOP3A-209ENST00000580095 CALM2P0DP24 149 aa11.89□□□□□ -0.51
TOP3A-209ENST00000580095 CALM3P0DP25 149 aa11.89□□□□□ -0.51
TOP3A-209ENST00000580095 CASP14P31944 242 aa11.89□□□□□ -0.51
TOP3A-209ENST00000580095 PFKFB3Q16875 520 aaPredicted RBP11.89□□□□□ -0.51
TOP3A-209ENST00000580095 INF2Q27J81 1249 aa11.89□□□□□ -0.51
TOP3A-209ENST00000580095 SPATA1Q5VX52 437 aa11.89□□□□□ -0.51
TOP3A-209ENST00000580095 RAD9BQ6WBX8 426 aa11.89□□□□□ -0.51
TOP3A-209ENST00000580095 SH3RF1Q7Z6J0 888 aa11.89□□□□□ -0.51
TOP3A-209ENST00000580095 HOMEZQ8IX15 550 aa11.89□□□□□ -0.51
TOP3A-209ENST00000580095 MNS1Q8NEH6 495 aa11.89□□□□□ -0.51
TOP3A-209ENST00000580095 FERMT2Q96AC1 680 aa11.89□□□□□ -0.51
TOP3A-209ENST00000580095 TMEM60Q9H2L4 133 aa11.89□□□□□ -0.51
TOP3A-209ENST00000580095 VAT1LQ9HCJ6 419 aa11.89□□□□□ -0.51
TOP3A-209ENST00000580095 TAB2Q9NYJ8 693 aa11.89□□□□□ -0.51
TOP3A-209ENST00000580095 OGFRQ9NZT2 677 aa11.89□□□□□ -0.51
TOP3A-209ENST00000580095 MYH13Q9UKX3 1938 aa11.89□□□□□ -0.51
TOP3A-209ENST00000580095 A0A1B0GTH6 734 aa11.88□□□□□ -0.51
TOP3A-209ENST00000580095 TRIM49BA6NDI0 452 aa11.88□□□□□ -0.51
TOP3A-209ENST00000580095 PES1O00541 588 aaKnown RBP11.88□□□□□ -0.51
TOP3A-209ENST00000580095 ORC4O43929 436 aa11.88□□□□□ -0.51
TOP3A-209ENST00000580095 LDHBP07195 334 aaKnown RBP11.88□□□□□ -0.51
TOP3A-209ENST00000580095 SLC10A5Q5PT55 438 aa11.88□□□□□ -0.51
TOP3A-209ENST00000580095 ATP8A2Q9NTI2 1148 aa11.88□□□□□ -0.51
TOP3A-209ENST00000580095 CYTH3O43739 400 aa11.88□□□□□ -0.51
TOP3A-209ENST00000580095 SEC31AO94979 1220 aaKnown RBP11.88□□□□□ -0.51
TOP3A-209ENST00000580095 FXR1P51114 621 aaKnown RBP eCLIP11.88□□□□□ -0.51
TOP3A-209ENST00000580095 PPP2R5BQ15173 497 aa11.88□□□□□ -0.51
TOP3A-209ENST00000580095 BARGINQ6ZT62 677 aa11.88□□□□□ -0.51
TOP3A-209ENST00000580095 TRIML1Q8N9V2 468 aa11.88□□□□□ -0.51
TOP3A-209ENST00000580095 RTCBQ9Y3I0 505 aaKnown RBP11.88□□□□□ -0.51
TOP3A-209ENST00000580095 AKR1B15C9JRZ8 316 aaPredicted RBP11.87□□□□□ -0.51
TOP3A-209ENST00000580095 ZSCAN12O43309 604 aa11.87□□□□□ -0.51
TOP3A-209ENST00000580095 TSPY3P0CV98 308 aa11.87□□□□□ -0.51
TOP3A-209ENST00000580095 TSPY8P0CW00 308 aa11.87□□□□□ -0.51
TOP3A-209ENST00000580095 ERCC5P28715 1186 aaPredicted RBP11.87□□□□□ -0.51
TOP3A-209ENST00000580095 CLCN6P51797 869 aa11.87□□□□□ -0.51
TOP3A-209ENST00000580095 DHX8Q14562 1220 aaKnown RBP11.87□□□□□ -0.51
TOP3A-209ENST00000580095 E2F4Q16254 413 aa11.87□□□□□ -0.51
TOP3A-209ENST00000580095 PPFIBP1Q86W92 1011 aa11.87□□□□□ -0.51
TOP3A-209ENST00000580095 BLIDQ8IZY5 108 aa11.87□□□□□ -0.51
TOP3A-209ENST00000580095 IQUBQ8NA54 791 aa11.87□□□□□ -0.51
TOP3A-209ENST00000580095 UBXN4Q92575 508 aa11.87□□□□□ -0.51
TOP3A-209ENST00000580095 FEZ1Q99689 392 aa11.87□□□□□ -0.51
TOP3A-209ENST00000580095 ARPP21Q9UBL0 812 aaPredicted RBP11.87□□□□□ -0.51
TOP3A-209ENST00000580095 ADD3Q9UEY8 706 aaKnown RBP11.87□□□□□ -0.51
TOP3A-209ENST00000580095 SPATA31A6Q5VVP1 1343 aa11.87□□□□□ -0.51
TOP3A-209ENST00000580095 STX10O60499 249 aa11.87□□□□□ -0.51
TOP3A-209ENST00000580095 RPS6KA4O75676 772 aa11.87□□□□□ -0.51
TOP3A-209ENST00000580095 CASQ1P31415 396 aa11.87□□□□□ -0.51
TOP3A-209ENST00000580095 KCNJ6P48051 423 aa11.87□□□□□ -0.51
TOP3A-209ENST00000580095 IRX5P78411 483 aaPredicted RBP11.87□□□□□ -0.51
TOP3A-209ENST00000580095 C12orf60Q5U649 245 aa11.87□□□□□ -0.51
TOP3A-209ENST00000580095 PDXDC2PQ6P474 469 aa11.87□□□□□ -0.51
TOP3A-209ENST00000580095 NYXQ9GZU5 481 aa11.87□□□□□ -0.51
TOP3A-209ENST00000580095 N4BP3O15049 544 aa11.87□□□□□ -0.51
TOP3A-209ENST00000580095 KRT31Q15323 416 aa11.87□□□□□ -0.51
TOP3A-209ENST00000580095 TEX35Q5T0J7 233 aa11.87□□□□□ -0.51
TOP3A-209ENST00000580095 WWC2Q6AWC2 1192 aa11.87□□□□□ -0.51
TOP3A-209ENST00000580095 ELOA2Q8IYF1 753 aaPredicted RBP11.87□□□□□ -0.51
TOP3A-209ENST00000580095 GSDMAQ96QA5 445 aa11.87□□□□□ -0.51
TOP3A-209ENST00000580095 ANKRD2Q9GZV1 360 aa11.87□□□□□ -0.51
TOP3A-209ENST00000580095 PHLPP2Q6ZVD8 1323 aa11.86□□□□□ -0.51
TOP3A-209ENST00000580095 RFC4P35249 363 aa11.86□□□□□ -0.51
TOP3A-209ENST00000580095 STAT6P42226 847 aa11.86□□□□□ -0.51
TOP3A-209ENST00000580095 TAF3Q5VWG9 929 aa11.86□□□□□ -0.51
TOP3A-209ENST00000580095 GPIHBP1Q8IV16 184 aa11.86□□□□□ -0.51
TOP3A-209ENST00000580095 ACRBPQ8NEB7 543 aa11.86□□□□□ -0.51
TOP3A-209ENST00000580095 CCDC12Q8WUD4 166 aaPredicted RBP11.86□□□□□ -0.51
TOP3A-209ENST00000580095 UIMC1Q96RL1 719 aa11.86□□□□□ -0.51
TOP3A-209ENST00000580095 CCDC194A0A1B0GVG4 234 aa11.86□□□□□ -0.51
TOP3A-209ENST00000580095 GYPCP04921 128 aa11.86□□□□□ -0.51
TOP3A-209ENST00000580095 PRCPP42785 496 aa11.86□□□□□ -0.51
TOP3A-209ENST00000580095 PMS1P54277 932 aaKnown RBP11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms