RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 FLT1P17948 1338 aa11.99□□□□□ -0.49
SS18-210ENST00000578700 USP17L15C9J2P7 530 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 USP17L13C9JLJ4 530 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 USP17L11C9JVI0 530 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 USP17L18D6R9N7 530 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 USP17L22D6RA61 530 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 USP17L17D6RBQ6 530 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 USP17L19D6RCP7 530 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 USP17L20D6RJB6 530 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 CNMDO75829 334 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 PTPREP23469 700 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 CYP2C19P33261 490 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 USP5P45974 858 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 RTP1P59025 263 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 CCNA1P78396 465 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 PTH1RQ03431 593 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 USP17L24Q0WX57 530 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 GJC2Q5T442 439 aaPredicted RBP11.98□□□□□ -0.49
SS18-210ENST00000578700 SLC9C2Q5TAH2 1124 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 CREB3L3Q68CJ9 461 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 ADGRA1Q86SQ6 560 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 SPRYD3Q8NCJ5 442 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 NPLOC4Q8TAT6 608 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 DSCC1Q9BVC3 393 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 TM6SF1Q9BZW5 370 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 ANTXR1Q9H6X2 564 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 RABGAP1Q9Y3P9 1069 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 CYP46A1Q9Y6A2 500 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 IVNS1ABPQ9Y6Y0 642 aa11.98□□□□□ -0.49
SS18-210ENST00000578700 MYO5AQ9Y4I1 1855 aaKnown RBP11.97□□□□□ -0.49
SS18-210ENST00000578700 MAST2Q6P0Q8 1798 aa11.97□□□□□ -0.49
SS18-210ENST00000578700 CYP2E1P05181 493 aaPredicted RBP11.97□□□□□ -0.49
SS18-210ENST00000578700 CYP7A1P22680 504 aa11.97□□□□□ -0.49
SS18-210ENST00000578700 PPP4CP60510 307 aa11.97□□□□□ -0.49
SS18-210ENST00000578700 NECTIN1Q15223 517 aa11.97□□□□□ -0.49
SS18-210ENST00000578700 UBE3CQ15386 1083 aa11.97□□□□□ -0.49
SS18-210ENST00000578700 SHHQ15465 462 aa11.97□□□□□ -0.49
SS18-210ENST00000578700 FAM109BQ6ICB4 259 aaPredicted RBP11.97□□□□□ -0.49
SS18-210ENST00000578700 DPP9Q86TI2 863 aa11.97□□□□□ -0.49
SS18-210ENST00000578700 ZNF589Q86UQ0 364 aaPredicted RBP11.97□□□□□ -0.49
SS18-210ENST00000578700 LPAR1Q92633 364 aa11.97□□□□□ -0.49
SS18-210ENST00000578700 JAKMIP1Q96N16 626 aaKnown RBP11.97□□□□□ -0.49
SS18-210ENST00000578700 CDX2Q99626 313 aaPredicted RBP11.97□□□□□ -0.49
SS18-210ENST00000578700 GINM1Q9NU53 330 aa11.97□□□□□ -0.49
SS18-210ENST00000578700 CHMP5Q9NZZ3 219 aa11.97□□□□□ -0.49
SS18-210ENST00000578700 MUC3AQ02505 3323 aa11.96□□□□□ -0.49
SS18-210ENST00000578700 SLC15A5A6NIM6 579 aa11.96□□□□□ -0.49
SS18-210ENST00000578700 SLC27A2O14975 620 aa11.96□□□□□ -0.49
SS18-210ENST00000578700 CASTP20810 708 aaKnown RBP11.96□□□□□ -0.49
SS18-210ENST00000578700 ADD2P35612 726 aa11.96□□□□□ -0.49
SS18-210ENST00000578700 ANKRD1Q15327 319 aa11.96□□□□□ -0.49
SS18-210ENST00000578700 CATSPERGQ6ZRH7 1159 aa11.96□□□□□ -0.49
SS18-210ENST00000578700 METTL16Q86W50 562 aaKnown RBP11.96□□□□□ -0.49
SS18-210ENST00000578700 MIGA1Q8NAN2 632 aa11.96□□□□□ -0.49
SS18-210ENST00000578700 ACER1Q8TDN7 264 aa11.96□□□□□ -0.49
SS18-210ENST00000578700 KCNB2Q92953 911 aa11.96□□□□□ -0.49
SS18-210ENST00000578700 BTBD7Q9P203 1132 aa11.96□□□□□ -0.49
SS18-210ENST00000578700 CIZ1Q9ULV3 898 aaPredicted RBP11.96□□□□□ -0.49
SS18-210ENST00000578700 TTC28Q96AY4 2481 aa11.96□□□□□ -0.5
SS18-210ENST00000578700 MYH1P12882 1939 aa11.96□□□□□ -0.5
SS18-210ENST00000578700 DNM1LO00429 736 aa11.95□□□□□ -0.5
SS18-210ENST00000578700 MSCO60682 206 aa11.95□□□□□ -0.5
SS18-210ENST00000578700 IGSF3O75054 1194 aa11.95□□□□□ -0.5
SS18-210ENST00000578700 HMGB1P09429 215 aaKnown RBP11.95□□□□□ -0.5
SS18-210ENST00000578700 CERKLQ49MI3 558 aaPredicted RBP11.95□□□□□ -0.5
SS18-210ENST00000578700 C9orf50Q5SZB4 431 aa11.95□□□□□ -0.5
SS18-210ENST00000578700 VPS53Q5VIR6 699 aa11.95□□□□□ -0.5
SS18-210ENST00000578700 TMED8Q6PL24 325 aaPredicted RBP11.95□□□□□ -0.5
SS18-210ENST00000578700 BLOC1S2Q6QNY1 142 aa11.95□□□□□ -0.5
SS18-210ENST00000578700 SAMD1Q6SPF0 538 aaPredicted RBP11.95□□□□□ -0.5
SS18-210ENST00000578700 SLC39A5Q6ZMH5 540 aa11.95□□□□□ -0.5
SS18-210ENST00000578700 CCDC129Q6ZRS4 1044 aa11.95□□□□□ -0.5
SS18-210ENST00000578700 TRPV1Q8NER1 839 aa11.95□□□□□ -0.5
SS18-210ENST00000578700 MAFAQ8NHW3 353 aaPredicted RBP11.95□□□□□ -0.5
SS18-210ENST00000578700 BADQ92934 168 aa11.95□□□□□ -0.5
SS18-210ENST00000578700 SEC62Q99442 399 aaKnown RBP11.95□□□□□ -0.5
SS18-210ENST00000578700 UPF3BQ9BZI7 483 aaKnown RBP11.95□□□□□ -0.5
SS18-210ENST00000578700 SEMA6BQ9H3T3 888 aa11.95□□□□□ -0.5
SS18-210ENST00000578700 RPAP3Q9H6T3 665 aaPredicted RBP11.95□□□□□ -0.5
SS18-210ENST00000578700 CABP5Q9NP86 173 aa11.95□□□□□ -0.5
SS18-210ENST00000578700 PIH1D3Q9NQM4 214 aaKnown RBP11.95□□□□□ -0.5
SS18-210ENST00000578700 PDRG1Q9NUG6 133 aa11.95□□□□□ -0.5
SS18-210ENST00000578700 ZNF532Q9HCE3 1301 aa11.94□□□□□ -0.5
SS18-210ENST00000578700 KBTBD13C9JR72 458 aa11.94□□□□□ -0.5
SS18-210ENST00000578700 PDE6AP16499 860 aa11.94□□□□□ -0.5
SS18-210ENST00000578700 GNAT2P19087 354 aa11.94□□□□□ -0.5
SS18-210ENST00000578700 VCAM1P19320 739 aa11.94□□□□□ -0.5
SS18-210ENST00000578700 USP14P54578 494 aa11.94□□□□□ -0.5
SS18-210ENST00000578700 IMMTQ16891 758 aaKnown RBP11.94□□□□□ -0.5
SS18-210ENST00000578700 ABCB5Q2M3G0 1257 aa11.94□□□□□ -0.5
SS18-210ENST00000578700 TSGA10IPQ3SY00 556 aa11.94□□□□□ -0.5
SS18-210ENST00000578700 PRAMEF19Q5SWL8 479 aa11.94□□□□□ -0.5
SS18-210ENST00000578700 RUFY3Q7L099 469 aa11.94□□□□□ -0.5
SS18-210ENST00000578700 RASEFQ8IZ41 740 aa11.94□□□□□ -0.5
SS18-210ENST00000578700 ARRDC4Q8NCT1 418 aa11.94□□□□□ -0.5
SS18-210ENST00000578700 MYLIPQ8WY64 445 aa11.94□□□□□ -0.5
SS18-210ENST00000578700 FERMT2Q96AC1 680 aa11.94□□□□□ -0.5
SS18-210ENST00000578700 ZSCAN31Q96LW9 406 aaPredicted RBP11.94□□□□□ -0.5
SS18-210ENST00000578700 ZSWIM6Q9HCJ5 1215 aa11.94□□□□□ -0.5
SS18-210ENST00000578700 LTBP2Q14767 1821 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms