RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 PORCNQ9H237 461 aa23.02■■□□□ 1.28
SS18-209ENST00000578595 BTBD7Q9P203 1132 aa23.02■■□□□ 1.28
SS18-209ENST00000578595 CTDP1Q9Y5B0 961 aaPredicted RBP23.02■■□□□ 1.28
SS18-209ENST00000578595 CNMDO75829 334 aa23.01■■□□□ 1.27
SS18-209ENST00000578595 DSG3P32926 999 aa23.01■■□□□ 1.27
SS18-209ENST00000578595 IKQ13123 557 aaPredicted RBP23.01■■□□□ 1.27
SS18-209ENST00000578595 SLFN13Q68D06 897 aa23.01■■□□□ 1.27
SS18-209ENST00000578595 KIAA1211Q6ZU35 1233 aa23.01■■□□□ 1.27
SS18-209ENST00000578595 NBPF3Q9H094 633 aa23.01■■□□□ 1.27
SS18-209ENST00000578595 IVNS1ABPQ9Y6Y0 642 aa23.01■■□□□ 1.27
SS18-209ENST00000578595 ADCY3O60266 1144 aa23■■□□□ 1.27
SS18-209ENST00000578595 PCP11498 1178 aaKnown RBP23■■□□□ 1.27
SS18-209ENST00000578595 ELNP15502 786 aa23■■□□□ 1.27
SS18-209ENST00000578595 LBX2Q6XYB7 198 aa23■■□□□ 1.27
SS18-209ENST00000578595 SLAIN1Q8ND83 568 aa23■■□□□ 1.27
SS18-209ENST00000578595 ARMC5Q96C12 935 aa23■■□□□ 1.27
SS18-209ENST00000578595 SGSM2O43147 1006 aa22.99■■□□□ 1.27
SS18-209ENST00000578595 FGRP09769 529 aa22.99■■□□□ 1.27
SS18-209ENST00000578595 BMP2KLQ5H9B9 411 aa22.99■■□□□ 1.27
SS18-209ENST00000578595 POTEEQ6S8J3 1075 aa22.99■■□□□ 1.27
SS18-209ENST00000578595 GPR142Q7Z601 462 aa22.99■■□□□ 1.27
SS18-209ENST00000578595 PLEKHH3Q7Z736 793 aa22.99■■□□□ 1.27
SS18-209ENST00000578595 MB21D1Q8N884 522 aa22.99■■□□□ 1.27
SS18-209ENST00000578595 MKL1Q969V6 931 aa22.99■■□□□ 1.27
SS18-209ENST00000578595 SLF1Q9BQI6 1058 aa22.99■■□□□ 1.27
SS18-209ENST00000578595 TMEM106CQ9BVX2 250 aa22.99■■□□□ 1.27
SS18-209ENST00000578595 IL17RBQ9NRM6 502 aa22.99■■□□□ 1.27
SS18-209ENST00000578595 PPP1R9AQ9ULJ8 1098 aa22.99■■□□□ 1.27
SS18-209ENST00000578595 BMP3P12645 472 aa22.98■■□□□ 1.27
SS18-209ENST00000578595 CYP2B6P20813 491 aa22.98■■□□□ 1.27
SS18-209ENST00000578595 SLC1A4P43007 532 aa22.98■■□□□ 1.27
SS18-209ENST00000578595 SLC4A3P48751 1232 aa22.98■■□□□ 1.27
SS18-209ENST00000578595 PTH1RQ03431 593 aa22.98■■□□□ 1.27
SS18-209ENST00000578595 CCDC96Q2M329 555 aa22.98■■□□□ 1.27
SS18-209ENST00000578595 CASC1Q6TDU7 716 aa22.98■■□□□ 1.27
SS18-209ENST00000578595 GMCL1P1Q8NEA9 526 aa22.98■■□□□ 1.27
SS18-209ENST00000578595 SOCS4Q8WXH5 440 aa22.98■■□□□ 1.27
SS18-209ENST00000578595 KIFC2Q96AC6 838 aa22.98■■□□□ 1.27
SS18-209ENST00000578595 ZNF333Q96JL9 665 aa22.98■■□□□ 1.27
SS18-209ENST00000578595 NUDT12Q9BQG2 462 aa22.98■■□□□ 1.27
SS18-209ENST00000578595 ZKSCAN3Q9BRR0 538 aa22.98■■□□□ 1.27
SS18-209ENST00000578595 SPATC1LQ9H0A9 340 aa22.98■■□□□ 1.27
SS18-209ENST00000578595 PPP4R2Q9NY27 417 aa22.98■■□□□ 1.27
SS18-209ENST00000578595 SYNPO2Q9UMS6 1093 aa22.98■■□□□ 1.27
SS18-209ENST00000578595 U3KPZ7 1027 aaPredicted RBP22.98■■□□□ 1.27
SS18-209ENST00000578595 HTTP42858 3142 aa22.98■■□□□ 1.27
SS18-209ENST00000578595 PLXNA1Q9UIW2 1896 aa22.97■■□□□ 1.27
SS18-209ENST00000578595 B4E1Z4 1266 aa22.97■■□□□ 1.27
SS18-209ENST00000578595 KDM4AO75164 1064 aa22.97■■□□□ 1.27
SS18-209ENST00000578595 UBXN2AP68543 259 aa22.97■■□□□ 1.27
SS18-209ENST00000578595 NCAPG2Q86XI2 1143 aa22.97■■□□□ 1.27
SS18-209ENST00000578595 MCCP23508 829 aa22.96■■□□□ 1.27
SS18-209ENST00000578595 IRF5Q13568 498 aa22.96■■□□□ 1.27
SS18-209ENST00000578595 IQCA1Q86XH1 822 aa22.96■■□□□ 1.27
SS18-209ENST00000578595 MOV10L1Q9BXT6 1211 aaKnown RBP22.96■■□□□ 1.27
SS18-209ENST00000578595 KRT23Q9C075 422 aa22.96■■□□□ 1.27
SS18-209ENST00000578595 MYH6P13533 1939 aa22.96■■□□□ 1.27
SS18-209ENST00000578595 TMEM232C9JQI7 657 aa22.95■■□□□ 1.26
SS18-209ENST00000578595 TOP1P11387 765 aaKnown RBP22.95■■□□□ 1.26
SS18-209ENST00000578595 TRDNQ13061 729 aa22.95■■□□□ 1.26
SS18-209ENST00000578595 ESYT1Q9BSJ8 1104 aa22.95■■□□□ 1.26
SS18-209ENST00000578595 CNNM2Q9H8M5 875 aa22.95■■□□□ 1.26
SS18-209ENST00000578595 FEM1BQ9UK73 627 aa22.95■■□□□ 1.26
SS18-209ENST00000578595 VWA5AO00534 786 aa22.94■■□□□ 1.26
SS18-209ENST00000578595 INHAP05111 366 aa22.94■■□□□ 1.26
SS18-209ENST00000578595 ERCC3P19447 782 aa22.94■■□□□ 1.26
SS18-209ENST00000578595 RGS2P41220 211 aa22.94■■□□□ 1.26
SS18-209ENST00000578595 KCTD1Q719H9 257 aa22.94■■□□□ 1.26
SS18-209ENST00000578595 RASGRP2Q7LDG7 609 aa22.94■■□□□ 1.26
SS18-209ENST00000578595 PRPF38AQ8NAV1 312 aaKnown RBP22.94■■□□□ 1.26
SS18-209ENST00000578595 ANO2Q9NQ90 1003 aa22.94■■□□□ 1.26
SS18-209ENST00000578595 ZBED4O75132 1171 aa22.93■■□□□ 1.26
SS18-209ENST00000578595 CDC45O75419 566 aa22.93■■□□□ 1.26
SS18-209ENST00000578595 STAT2P52630 851 aa22.93■■□□□ 1.26
SS18-209ENST00000578595 TMEM132BQ14DG7 1078 aa22.93■■□□□ 1.26
SS18-209ENST00000578595 MTFR1Q15390 333 aa22.93■■□□□ 1.26
SS18-209ENST00000578595 ERICH6BQ5W0A0 696 aa22.93■■□□□ 1.26
SS18-209ENST00000578595 RALYLQ86SE5 291 aaKnown RBP22.93■■□□□ 1.26
SS18-209ENST00000578595 CPXCR1Q8N123 301 aa22.93■■□□□ 1.26
SS18-209ENST00000578595 TMEM47Q9BQJ4 181 aa22.93■■□□□ 1.26
SS18-209ENST00000578595 UBAC1Q9BSL1 405 aa22.93■■□□□ 1.26
SS18-209ENST00000578595 TCP11L1Q9NUJ3 509 aa22.93■■□□□ 1.26
SS18-209ENST00000578595 RBM8AQ9Y5S9 174 aaKnown RBP22.93■■□□□ 1.26
SS18-209ENST00000578595 ZNF236Q9UL36 1845 aa22.93■■□□□ 1.26
SS18-209ENST00000578595 POTEFA5A3E0 1075 aa22.92■■□□□ 1.26
SS18-209ENST00000578595 ZKSCAN1P17029 563 aaPredicted RBP22.92■■□□□ 1.26
SS18-209ENST00000578595 NKX2-3Q8TAU0 364 aa22.92■■□□□ 1.26
SS18-209ENST00000578595 PXYLP1Q8TE99 480 aa22.92■■□□□ 1.26
SS18-209ENST00000578595 GMCL1Q96IK5 515 aa22.92■■□□□ 1.26
SS18-209ENST00000578595 GJD2Q9UKL4 321 aa22.92■■□□□ 1.26
SS18-209ENST00000578595 FRMPD2Q68DX3 1309 aaPredicted RBP22.91■■□□□ 1.26
SS18-209ENST00000578595 SLC15A5A6NIM6 579 aa22.91■■□□□ 1.26
SS18-209ENST00000578595 HMGCRP04035 888 aa22.91■■□□□ 1.26
SS18-209ENST00000578595 CYP21A2P08686 494 aa22.91■■□□□ 1.26
SS18-209ENST00000578595 CCL5P13501 91 aa22.91■■□□□ 1.26
SS18-209ENST00000578595 PTPREP23469 700 aa22.91■■□□□ 1.26
SS18-209ENST00000578595 STAT3P40763 770 aa22.91■■□□□ 1.26
SS18-209ENST00000578595 MAP2K5Q13163 448 aa22.91■■□□□ 1.26
SS18-209ENST00000578595 CCDC178Q5BJE1 867 aa22.91■■□□□ 1.26
SS18-209ENST00000578595 SNRNP48Q6IEG0 339 aaKnown RBP22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms