RNA–Protein interactions for RNA: ENST00000578525.5

CDK5RAP3-208, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 4

Gene CDK5RAP3, Length 564 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-208ENST00000578525 USP17L3A6NCW0 530 aa10.62□□□□□ -0.71
CDK5RAP3-208ENST00000578525 USP17L4A6NCW7 530 aa10.62□□□□□ -0.71
CDK5RAP3-208ENST00000578525 GTPBP6O43824 516 aaPredicted RBP10.62□□□□□ -0.71
CDK5RAP3-208ENST00000578525 BBOX1O75936 387 aa10.62□□□□□ -0.71
CDK5RAP3-208ENST00000578525 CDK11BP21127 795 aaKnown RBP10.62□□□□□ -0.71
CDK5RAP3-208ENST00000578525 HOXA10P31260 410 aaPredicted RBP10.62□□□□□ -0.71
CDK5RAP3-208ENST00000578525 LONP1P36776 959 aaKnown RBP10.62□□□□□ -0.71
CDK5RAP3-208ENST00000578525 AFMP43652 599 aa10.62□□□□□ -0.71
CDK5RAP3-208ENST00000578525 TBX2Q13207 712 aaPredicted RBP10.62□□□□□ -0.71
CDK5RAP3-208ENST00000578525 E2F4Q16254 413 aa10.62□□□□□ -0.71
CDK5RAP3-208ENST00000578525 SLC27A3Q5K4L6 730 aa10.62□□□□□ -0.71
CDK5RAP3-208ENST00000578525 SPATA1Q5VX52 437 aa10.62□□□□□ -0.71
CDK5RAP3-208ENST00000578525 ARL6IP4Q66PJ3 421 aaKnown RBP10.62□□□□□ -0.71
CDK5RAP3-208ENST00000578525 C16orf86Q6ZW13 317 aa10.62□□□□□ -0.71
CDK5RAP3-208ENST00000578525 USP17L1Q7RTZ2 530 aa10.62□□□□□ -0.71
CDK5RAP3-208ENST00000578525 TMC4Q7Z404 712 aa10.62□□□□□ -0.71
CDK5RAP3-208ENST00000578525 TEX11Q8IYF3 940 aa10.62□□□□□ -0.71
CDK5RAP3-208ENST00000578525 TRMT44Q8IYL2 757 aaKnown RBP10.62□□□□□ -0.71
CDK5RAP3-208ENST00000578525 STAG2Q8N3U4 1231 aa10.62□□□□□ -0.71
CDK5RAP3-208ENST00000578525 IQUBQ8NA54 791 aa10.62□□□□□ -0.71
CDK5RAP3-208ENST00000578525 TBC1D22AQ8WUA7 517 aa10.62□□□□□ -0.71
CDK5RAP3-208ENST00000578525 ZNF592Q92610 1267 aa10.62□□□□□ -0.71
CDK5RAP3-208ENST00000578525 TMX1Q9H3N1 280 aa10.62□□□□□ -0.71
CDK5RAP3-208ENST00000578525 INTS13Q9NVM9 706 aa10.62□□□□□ -0.71
CDK5RAP3-208ENST00000578525 SAP30BPQ9UHR5 308 aaKnown RBP10.62□□□□□ -0.71
CDK5RAP3-208ENST00000578525 TRPC5Q9UL62 973 aaPredicted RBP10.62□□□□□ -0.71
CDK5RAP3-208ENST00000578525 LTBP1Q14766 1721 aa10.61□□□□□ -0.71
CDK5RAP3-208ENST00000578525 GAKO14976 1311 aa10.61□□□□□ -0.71
CDK5RAP3-208ENST00000578525 FAM205AQ6ZU69 1335 aa10.61□□□□□ -0.71
CDK5RAP3-208ENST00000578525 SYNRGQ9UMZ2 1314 aa10.61□□□□□ -0.71
CDK5RAP3-208ENST00000578525 PALM3A6NDB9 673 aaPredicted RBP10.61□□□□□ -0.71
CDK5RAP3-208ENST00000578525 ADAMTS3O15072 1205 aa10.61□□□□□ -0.71
CDK5RAP3-208ENST00000578525 VEGFAP15692 232 aaPredicted RBP10.61□□□□□ -0.71
CDK5RAP3-208ENST00000578525 MCM7P33993 719 aa10.61□□□□□ -0.71
CDK5RAP3-208ENST00000578525 TXLNAP40222 546 aa10.61□□□□□ -0.71
CDK5RAP3-208ENST00000578525 CDK8P49336 464 aa10.61□□□□□ -0.71
CDK5RAP3-208ENST00000578525 CUL4BQ13620 913 aa10.61□□□□□ -0.71
CDK5RAP3-208ENST00000578525 SLC35G1Q2M3R5 365 aa10.61□□□□□ -0.71
CDK5RAP3-208ENST00000578525 WWC2Q6AWC2 1192 aa10.61□□□□□ -0.71
CDK5RAP3-208ENST00000578525 PDXDC2PQ6P474 469 aa10.61□□□□□ -0.71
CDK5RAP3-208ENST00000578525 C4orf32Q8N8J7 132 aa10.61□□□□□ -0.71
CDK5RAP3-208ENST00000578525 SLC44A5Q8NCS7 719 aa10.61□□□□□ -0.71
CDK5RAP3-208ENST00000578525 NEDD1Q8NHV4 660 aa10.61□□□□□ -0.71
CDK5RAP3-208ENST00000578525 KIF18AQ8NI77 898 aa10.61□□□□□ -0.71
CDK5RAP3-208ENST00000578525 GPKOWQ92917 476 aaPredicted RBP eCLIP10.61□□□□□ -0.71
CDK5RAP3-208ENST00000578525 FAM163AQ96GL9 167 aaPredicted RBP10.61□□□□□ -0.71
CDK5RAP3-208ENST00000578525 MED15Q96RN5 788 aa10.61□□□□□ -0.71
CDK5RAP3-208ENST00000578525 TMEM47Q9BQJ4 181 aa10.61□□□□□ -0.71
CDK5RAP3-208ENST00000578525 A0A1B0GTH6 734 aa10.6□□□□□ -0.71
CDK5RAP3-208ENST00000578525 CCDC194A0A1B0GVG4 234 aa10.6□□□□□ -0.71
CDK5RAP3-208ENST00000578525 PPP1R3GB7ZBB8 358 aa10.6□□□□□ -0.71
CDK5RAP3-208ENST00000578525 M0R2N6 131 aa10.6□□□□□ -0.71
CDK5RAP3-208ENST00000578525 STXBP3O00186 592 aa10.6□□□□□ -0.71
CDK5RAP3-208ENST00000578525 CD44P16070 742 aaKnown RBP10.6□□□□□ -0.71
CDK5RAP3-208ENST00000578525 IL17AQ16552 155 aa10.6□□□□□ -0.71
CDK5RAP3-208ENST00000578525 GLIPR1L2Q4G1C9 344 aa10.6□□□□□ -0.71
CDK5RAP3-208ENST00000578525 TBC1D16Q8TBP0 767 aa10.6□□□□□ -0.71
CDK5RAP3-208ENST00000578525 EYA3Q99504 573 aa10.6□□□□□ -0.71
CDK5RAP3-208ENST00000578525 SPZ1Q9BXG8 430 aa10.6□□□□□ -0.71
CDK5RAP3-208ENST00000578525 SAMSN1Q9NSI8 373 aaKnown RBP10.6□□□□□ -0.71
CDK5RAP3-208ENST00000578525 RMND1Q9NWS8 449 aa10.6□□□□□ -0.71
CDK5RAP3-208ENST00000578525 BARHL2Q9NY43 387 aa10.6□□□□□ -0.71
CDK5RAP3-208ENST00000578525 PCDHA6Q9UN73 950 aa10.6□□□□□ -0.71
CDK5RAP3-208ENST00000578525 PCDHA8Q9Y5H6 950 aa10.6□□□□□ -0.71
CDK5RAP3-208ENST00000578525 QSER1Q2KHR3 1735 aa10.6□□□□□ -0.71
CDK5RAP3-208ENST00000578525 FOCADQ5VW36 1801 aa10.6□□□□□ -0.71
CDK5RAP3-208ENST00000578525 FLT1P17948 1338 aa10.59□□□□□ -0.71
CDK5RAP3-208ENST00000578525 KLRG2A4D1S0 409 aaPredicted RBP10.59□□□□□ -0.71
CDK5RAP3-208ENST00000578525 POLRMTO00411 1230 aaKnown RBP10.59□□□□□ -0.71
CDK5RAP3-208ENST00000578525 PPEF1O14829 653 aaPredicted RBP10.59□□□□□ -0.71
CDK5RAP3-208ENST00000578525 ARHGAP6O43182 974 aa10.59□□□□□ -0.71
CDK5RAP3-208ENST00000578525 HMGB2P26583 209 aaKnown RBP10.59□□□□□ -0.71
CDK5RAP3-208ENST00000578525 SMARCA1P28370 1054 aa10.59□□□□□ -0.71
CDK5RAP3-208ENST00000578525 CASP1P29466 404 aa10.59□□□□□ -0.71
CDK5RAP3-208ENST00000578525 RHBDL3P58872 404 aa10.59□□□□□ -0.71
CDK5RAP3-208ENST00000578525 DDR1Q08345 913 aa10.59□□□□□ -0.71
CDK5RAP3-208ENST00000578525 NCBP1Q09161 790 aaKnown RBP10.59□□□□□ -0.71
CDK5RAP3-208ENST00000578525 NR1I3Q14994 352 aa10.59□□□□□ -0.71
CDK5RAP3-208ENST00000578525 CDKAL1Q5VV42 579 aa10.59□□□□□ -0.71
CDK5RAP3-208ENST00000578525 SPECC1LQ69YQ0 1117 aa10.59□□□□□ -0.71
CDK5RAP3-208ENST00000578525 TYW1BQ6NUM6 668 aa10.59□□□□□ -0.71
CDK5RAP3-208ENST00000578525 KRT25Q7Z3Z0 450 aa10.59□□□□□ -0.71
CDK5RAP3-208ENST00000578525 HEATR3Q7Z4Q2 680 aa10.59□□□□□ -0.71
CDK5RAP3-208ENST00000578525 TMEM139Q8IV31 216 aa10.59□□□□□ -0.71
CDK5RAP3-208ENST00000578525 PDCL2Q8N4E4 241 aa10.59□□□□□ -0.71
CDK5RAP3-208ENST00000578525 CCDC12Q8WUD4 166 aaPredicted RBP10.59□□□□□ -0.71
CDK5RAP3-208ENST00000578525 PLIN4Q96Q06 1357 aa10.59□□□□□ -0.71
CDK5RAP3-208ENST00000578525 PHLPP2Q6ZVD8 1323 aa10.58□□□□□ -0.71
CDK5RAP3-208ENST00000578525 MYH1P12882 1939 aa10.58□□□□□ -0.72
CDK5RAP3-208ENST00000578525 KLRF2D3W0D1 207 aa10.58□□□□□ -0.72
CDK5RAP3-208ENST00000578525 LAD1O00515 517 aa10.58□□□□□ -0.72
CDK5RAP3-208ENST00000578525 ZSCAN12O43309 604 aa10.58□□□□□ -0.72
CDK5RAP3-208ENST00000578525 CYTH3O43739 400 aa10.58□□□□□ -0.72
CDK5RAP3-208ENST00000578525 PARP1P09874 1014 aaKnown RBP10.58□□□□□ -0.72
CDK5RAP3-208ENST00000578525 PRPHP41219 470 aa10.58□□□□□ -0.72
CDK5RAP3-208ENST00000578525 NOVP48745 357 aa10.58□□□□□ -0.72
CDK5RAP3-208ENST00000578525 GOLGA8FQ08AF8 430 aa10.58□□□□□ -0.72
CDK5RAP3-208ENST00000578525 GOLGA8DPQ0D2H9 430 aa10.58□□□□□ -0.72
CDK5RAP3-208ENST00000578525 HSP90AA4PQ58FG1 418 aa10.58□□□□□ -0.72
CDK5RAP3-208ENST00000578525 MFSD14BQ5SR56 506 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms