RNA–Protein interactions for RNA: ENST00000576033.5

CCDC40-215, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 466 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-215ENST00000576033 USP17L11C9JVI0 530 aa9.3□□□□□ -0.92
CCDC40-215ENST00000576033 USP17L18D6R9N7 530 aa9.3□□□□□ -0.92
CCDC40-215ENST00000576033 USP17L22D6RA61 530 aa9.3□□□□□ -0.92
CCDC40-215ENST00000576033 USP17L17D6RBQ6 530 aa9.3□□□□□ -0.92
CCDC40-215ENST00000576033 USP17L19D6RCP7 530 aa9.3□□□□□ -0.92
CCDC40-215ENST00000576033 USP17L20D6RJB6 530 aa9.3□□□□□ -0.92
CCDC40-215ENST00000576033 WDR46O15213 610 aaKnown RBP9.3□□□□□ -0.92
CCDC40-215ENST00000576033 PRC1O43663 620 aa9.3□□□□□ -0.92
CCDC40-215ENST00000576033 DTNBO60941 627 aa9.3□□□□□ -0.92
CCDC40-215ENST00000576033 FKTNO75072 461 aa9.3□□□□□ -0.92
CCDC40-215ENST00000576033 ALDH1A1P00352 501 aa9.3□□□□□ -0.92
CCDC40-215ENST00000576033 PDHBP11177 359 aa9.3□□□□□ -0.92
CCDC40-215ENST00000576033 HOXA7P31268 230 aaPredicted RBP9.3□□□□□ -0.92
CCDC40-215ENST00000576033 HSPA4P34932 840 aa9.3□□□□□ -0.92
CCDC40-215ENST00000576033 USP14P54578 494 aa9.3□□□□□ -0.92
CCDC40-215ENST00000576033 LACTBP83111 547 aaPredicted RBP9.3□□□□□ -0.92
CCDC40-215ENST00000576033 USP17L24Q0WX57 530 aa9.3□□□□□ -0.92
CCDC40-215ENST00000576033 SLC35G1Q2M3R5 365 aa9.3□□□□□ -0.92
CCDC40-215ENST00000576033 OTUD7BQ6GQQ9 843 aa9.3□□□□□ -0.92
CCDC40-215ENST00000576033 REM2Q8IYK8 340 aaPredicted RBP9.3□□□□□ -0.92
CCDC40-215ENST00000576033 MKL1Q969V6 931 aa9.3□□□□□ -0.92
CCDC40-215ENST00000576033 KIFC2Q96AC6 838 aa9.3□□□□□ -0.92
CCDC40-215ENST00000576033 TBC1D32Q96NH3 1257 aa9.3□□□□□ -0.92
CCDC40-215ENST00000576033 USP26Q9BXU7 913 aa9.3□□□□□ -0.92
CCDC40-215ENST00000576033 EFCC1Q9HA90 598 aa9.3□□□□□ -0.92
CCDC40-215ENST00000576033 LY9Q9HBG7 655 aa9.3□□□□□ -0.92
CCDC40-215ENST00000576033 GOPCQ9HD26 462 aa9.3□□□□□ -0.92
CCDC40-215ENST00000576033 GABRQQ9UN88 632 aa9.3□□□□□ -0.92
CCDC40-215ENST00000576033 SLC45A1Q9Y2W3 748 aa9.3□□□□□ -0.92
CCDC40-215ENST00000576033 MYH6P13533 1939 aa9.3□□□□□ -0.92
CCDC40-215ENST00000576033 TMEM232C9JQI7 657 aa9.29□□□□□ -0.92
CCDC40-215ENST00000576033 SH2B2O14492 632 aaPredicted RBP9.29□□□□□ -0.92
CCDC40-215ENST00000576033 IFIT3O14879 490 aaKnown RBP9.29□□□□□ -0.92
CCDC40-215ENST00000576033 TOP1P11387 765 aaKnown RBP9.29□□□□□ -0.92
CCDC40-215ENST00000576033 BMP3P12645 472 aa9.29□□□□□ -0.92
CCDC40-215ENST00000576033 OSBPP22059 807 aa9.29□□□□□ -0.92
CCDC40-215ENST00000576033 DSG3P32926 999 aa9.29□□□□□ -0.92
CCDC40-215ENST00000576033 ERVK-9P63128 1117 aa9.29□□□□□ -0.92
CCDC40-215ENST00000576033 ERVK-24P63145 666 aa9.29□□□□□ -0.92
CCDC40-215ENST00000576033 SP3Q02447 781 aa9.29□□□□□ -0.92
CCDC40-215ENST00000576033 TMEM132BQ14DG7 1078 aa9.29□□□□□ -0.92
CCDC40-215ENST00000576033 OTOP1Q7RTM1 612 aa9.29□□□□□ -0.92
CCDC40-215ENST00000576033 RALYLQ86SE5 291 aaKnown RBP9.29□□□□□ -0.92
CCDC40-215ENST00000576033 CCDC144CPQ8IYA2 1237 aa9.29□□□□□ -0.92
CCDC40-215ENST00000576033 STAG2Q8N3U4 1231 aa9.29□□□□□ -0.92
CCDC40-215ENST00000576033 PNMA1Q8ND90 353 aa9.29□□□□□ -0.92
CCDC40-215ENST00000576033 GMCL1P1Q8NEA9 526 aa9.29□□□□□ -0.92
CCDC40-215ENST00000576033 REPS2Q8NFH8 660 aa9.29□□□□□ -0.92
CCDC40-215ENST00000576033 NCOA7Q8NI08 942 aa9.29□□□□□ -0.92
CCDC40-215ENST00000576033 LPAR1Q92633 364 aa9.29□□□□□ -0.92
CCDC40-215ENST00000576033 JAKMIP1Q96N16 626 aaKnown RBP9.29□□□□□ -0.92
CCDC40-215ENST00000576033 LARP6Q9BRS8 491 aaKnown RBP9.29□□□□□ -0.92
CCDC40-215ENST00000576033 UBAC1Q9BSL1 405 aa9.29□□□□□ -0.92
CCDC40-215ENST00000576033 KRT23Q9C075 422 aa9.29□□□□□ -0.92
CCDC40-215ENST00000576033 SH2D4AQ9H788 454 aa9.29□□□□□ -0.92
CCDC40-215ENST00000576033 ZCCHC17Q9NP64 241 aaKnown RBP9.29□□□□□ -0.92
CCDC40-215ENST00000576033 TCP11L1Q9NUJ3 509 aa9.29□□□□□ -0.92
CCDC40-215ENST00000576033 PNMA3Q9UL41 463 aa9.29□□□□□ -0.92
CCDC40-215ENST00000576033 TAOK2Q9UL54 1235 aa9.29□□□□□ -0.92
CCDC40-215ENST00000576033 TRIM17Q9Y577 477 aa9.29□□□□□ -0.92
CCDC40-215ENST00000576033 PLXNA1Q9UIW2 1896 aa9.29□□□□□ -0.92
CCDC40-215ENST00000576033 BAZ2BQ9UIF8 2168 aaKnown RBP9.29□□□□□ -0.92
CCDC40-215ENST00000576033 ZNF236Q9UL36 1845 aa9.28□□□□□ -0.92
CCDC40-215ENST00000576033 LRRC37A2A6NM11 1700 aa9.28□□□□□ -0.92
CCDC40-215ENST00000576033 MKI67P46013 3256 aaKnown RBP9.28□□□□□ -0.92
CCDC40-215ENST00000576033 PCP11498 1178 aaKnown RBP9.28□□□□□ -0.92
CCDC40-215ENST00000576033 SLC1A4P43007 532 aa9.28□□□□□ -0.92
CCDC40-215ENST00000576033 SLC4A3P48751 1232 aa9.28□□□□□ -0.92
CCDC40-215ENST00000576033 PRKCZQ05513 592 aa9.28□□□□□ -0.92
CCDC40-215ENST00000576033 PLS1Q14651 629 aa9.28□□□□□ -0.92
CCDC40-215ENST00000576033 TMEM67Q5HYA8 995 aa9.28□□□□□ -0.92
CCDC40-215ENST00000576033 IFIT1BQ5T764 474 aaKnown RBP9.28□□□□□ -0.92
CCDC40-215ENST00000576033 CCDC174Q6PII3 467 aa9.28□□□□□ -0.92
CCDC40-215ENST00000576033 NBPF11Q86T75 865 aa9.28□□□□□ -0.92
CCDC40-215ENST00000576033 CMTR1Q8N1G2 835 aaKnown RBP9.28□□□□□ -0.92
CCDC40-215ENST00000576033 IGDCC4Q8TDY8 1250 aa9.28□□□□□ -0.92
CCDC40-215ENST00000576033 KCNB2Q92953 911 aa9.28□□□□□ -0.92
CCDC40-215ENST00000576033 SLF1Q9BQI6 1058 aa9.28□□□□□ -0.92
CCDC40-215ENST00000576033 UPF3BQ9BZI7 483 aaKnown RBP9.28□□□□□ -0.92
CCDC40-215ENST00000576033 MCOLN1Q9GZU1 580 aa9.28□□□□□ -0.92
CCDC40-215ENST00000576033 UBA5Q9GZZ9 404 aa9.28□□□□□ -0.92
CCDC40-215ENST00000576033 KAT14Q9H8E8 782 aa9.28□□□□□ -0.92
CCDC40-215ENST00000576033 CNNM2Q9H8M5 875 aa9.28□□□□□ -0.92
CCDC40-215ENST00000576033 RAVER2Q9HCJ3 691 aaKnown RBP9.28□□□□□ -0.92
CCDC40-215ENST00000576033 PRDM10Q9NQV6 1147 aa9.28□□□□□ -0.92
CCDC40-215ENST00000576033 MORF4L1Q9UBU8 362 aa9.28□□□□□ -0.92
CCDC40-215ENST00000576033 PPP1R9AQ9ULJ8 1098 aa9.28□□□□□ -0.92
CCDC40-215ENST00000576033 ZNFX1Q9P2E3 1918 aaKnown RBP9.27□□□□□ -0.93
CCDC40-215ENST00000576033 VWA5AO00534 786 aa9.27□□□□□ -0.93
CCDC40-215ENST00000576033 REC8O95072 547 aa9.27□□□□□ -0.93
CCDC40-215ENST00000576033 MYCP01106 439 aaPredicted RBP9.27□□□□□ -0.93
CCDC40-215ENST00000576033 SNHG28P0DPA3 235 aa9.27□□□□□ -0.93
CCDC40-215ENST00000576033 PSMC4P43686 418 aa9.27□□□□□ -0.93
CCDC40-215ENST00000576033 RBM25P49756 843 aaKnown RBP9.27□□□□□ -0.93
CCDC40-215ENST00000576033 ZNF543Q08ER8 600 aa9.27□□□□□ -0.93
CCDC40-215ENST00000576033 TRDNQ13061 729 aa9.27□□□□□ -0.93
CCDC40-215ENST00000576033 IKQ13123 557 aaPredicted RBP9.27□□□□□ -0.93
CCDC40-215ENST00000576033 PABPC4Q13310 644 aaKnown RBP eCLIP9.27□□□□□ -0.93
CCDC40-215ENST00000576033 WTAPQ15007 396 aa9.27□□□□□ -0.93
CCDC40-215ENST00000576033 FAM110CQ1W6H9 321 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms