RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 CACNA1FO60840 1977 aa20.21■□□□□ 0.83
VPS53-218ENST00000575207 TPRP12270 2363 aaKnown RBP20.2■□□□□ 0.82
VPS53-218ENST00000575207 A0A0U1RQG5 324 aaPredicted RBP20.2■□□□□ 0.82
VPS53-218ENST00000575207 ZBBXA8MT70 800 aa20.2■□□□□ 0.82
VPS53-218ENST00000575207 ALDH1L1O75891 902 aa20.2■□□□□ 0.82
VPS53-218ENST00000575207 GDF11O95390 407 aa20.2■□□□□ 0.82
VPS53-218ENST00000575207 TAL1P17542 331 aaPredicted RBP20.2■□□□□ 0.82
VPS53-218ENST00000575207 VCAM1P19320 739 aa20.2■□□□□ 0.82
VPS53-218ENST00000575207 KCNA5P22460 613 aa20.2■□□□□ 0.82
VPS53-218ENST00000575207 CST5P28325 142 aaPredicted RBP20.2■□□□□ 0.82
VPS53-218ENST00000575207 TSR2Q969E8 191 aaKnown RBP20.2■□□□□ 0.82
VPS53-218ENST00000575207 SPATC1LQ9H0A9 340 aa20.2■□□□□ 0.82
VPS53-218ENST00000575207 DHX36Q9H2U1 1008 aaKnown RBP20.2■□□□□ 0.82
VPS53-218ENST00000575207 HIPK3Q9H422 1215 aa20.2■□□□□ 0.82
VPS53-218ENST00000575207 BICC1Q9H694 974 aaKnown RBP20.2■□□□□ 0.82
VPS53-218ENST00000575207 PKD1L2Q7Z442 2459 aa20.2■□□□□ 0.82
VPS53-218ENST00000575207 UMODL1Q5DID0 1318 aa20.2■□□□□ 0.82
VPS53-218ENST00000575207 SIPA1L1O43166 1804 aa20.19■□□□□ 0.82
VPS53-218ENST00000575207 PKN1Q16512 942 aa20.19■□□□□ 0.82
VPS53-218ENST00000575207 TINF2Q9BSI4 451 aa20.19■□□□□ 0.82
VPS53-218ENST00000575207 MROH8Q9H579 483 aa20.19■□□□□ 0.82
VPS53-218ENST00000575207 ZNF536O15090 1300 aa20.19■□□□□ 0.82
VPS53-218ENST00000575207 C19orf67A6NJJ6 358 aa20.18■□□□□ 0.82
VPS53-218ENST00000575207 USP14P54578 494 aa20.18■□□□□ 0.82
VPS53-218ENST00000575207 ZP2Q05996 745 aa20.18■□□□□ 0.82
VPS53-218ENST00000575207 ZYXQ15942 572 aaKnown RBP20.18■□□□□ 0.82
VPS53-218ENST00000575207 SPTY2D1Q68D10 685 aaPredicted RBP20.18■□□□□ 0.82
VPS53-218ENST00000575207 FOXP4Q8IVH2 680 aaPredicted RBP20.18■□□□□ 0.82
VPS53-218ENST00000575207 ANKRD44Q8N8A2 993 aa20.18■□□□□ 0.82
VPS53-218ENST00000575207 ZNF384Q8TF68 577 aa20.18■□□□□ 0.82
VPS53-218ENST00000575207 ABCF2Q9UG63 623 aa20.18■□□□□ 0.82
VPS53-218ENST00000575207 MYADML2A6NDP7 307 aa20.17■□□□□ 0.82
VPS53-218ENST00000575207 NBPF7P0C2Y1 421 aaPredicted RBP20.17■□□□□ 0.82
VPS53-218ENST00000575207 PHKA1P46020 1223 aa20.17■□□□□ 0.82
VPS53-218ENST00000575207 CCL23P55773 120 aa20.17■□□□□ 0.82
VPS53-218ENST00000575207 MECOMQ03112 1051 aa20.17■□□□□ 0.82
VPS53-218ENST00000575207 WDR43Q15061 677 aaKnown RBP eCLIP20.17■□□□□ 0.82
VPS53-218ENST00000575207 PCSK9Q8NBP7 692 aaKnown RBP20.17■□□□□ 0.82
VPS53-218ENST00000575207 FEZ1Q99689 392 aa20.17■□□□□ 0.82
VPS53-218ENST00000575207 UPF3BQ9BZI7 483 aaKnown RBP20.17■□□□□ 0.82
VPS53-218ENST00000575207 KIAA1683Q9H0B3 1180 aa20.17■□□□□ 0.82
VPS53-218ENST00000575207 ALG13Q9NP73 1137 aaKnown RBP20.17■□□□□ 0.82
VPS53-218ENST00000575207 PRKAG3Q9UGI9 489 aa20.17■□□□□ 0.82
VPS53-218ENST00000575207 PDS5AQ29RF7 1337 aaKnown RBP20.17■□□□□ 0.82
VPS53-218ENST00000575207 ASGR1P07306 291 aa20.16■□□□□ 0.82
VPS53-218ENST00000575207 ID4P47928 161 aa20.16■□□□□ 0.82
VPS53-218ENST00000575207 PHOSPHO2Q8TCD6 241 aa20.16■□□□□ 0.82
VPS53-218ENST00000575207 WNT8AQ9H1J5 351 aa20.16■□□□□ 0.82
VPS53-218ENST00000575207 FAM86C1Q9NVL1 165 aa20.16■□□□□ 0.82
VPS53-218ENST00000575207 EYA2O00167 538 aa20.15■□□□□ 0.82
VPS53-218ENST00000575207 APAF1O14727 1248 aa20.15■□□□□ 0.82
VPS53-218ENST00000575207 TTLL4Q14679 1199 aa20.15■□□□□ 0.82
VPS53-218ENST00000575207 NEK9Q8TD19 979 aa20.15■□□□□ 0.82
VPS53-218ENST00000575207 VTI1AQ96AJ9 217 aa20.15■□□□□ 0.82
VPS53-218ENST00000575207 NOC4LQ9BVI4 516 aaKnown RBP20.15■□□□□ 0.82
VPS53-218ENST00000575207 IRF2BPLQ9H1B7 796 aa20.15■□□□□ 0.82
VPS53-218ENST00000575207 RPAP3Q9H6T3 665 aaPredicted RBP20.15■□□□□ 0.82
VPS53-218ENST00000575207 HOXC10Q9NYD6 342 aa20.15■□□□□ 0.82
VPS53-218ENST00000575207 DIS3Q9Y2L1 958 aaKnown RBP20.15■□□□□ 0.82
VPS53-218ENST00000575207 GVINP1Q7Z2Y8 2422 aa20.15■□□□□ 0.82
VPS53-218ENST00000575207 PROB1E7EW31 1015 aa20.14■□□□□ 0.81
VPS53-218ENST00000575207 DUSP11O75319 330 aaKnown RBP20.14■□□□□ 0.81
VPS53-218ENST00000575207 PFKMP08237 780 aa20.14■□□□□ 0.81
VPS53-218ENST00000575207 FCER1AP12319 257 aa20.14■□□□□ 0.81
VPS53-218ENST00000575207 HERC4Q5GLZ8 1057 aaPredicted RBP20.14■□□□□ 0.81
VPS53-218ENST00000575207 SLC43A3Q8NBI5 491 aa20.14■□□□□ 0.81
VPS53-218ENST00000575207 SLC9A7Q96T83 725 aa20.14■□□□□ 0.81
VPS53-218ENST00000575207 VPS13AQ96RL7 3174 aa20.14■□□□□ 0.81
VPS53-218ENST00000575207 NCOR2Q9Y618 2525 aa20.13■□□□□ 0.81
VPS53-218ENST00000575207 COG2Q14746 738 aa20.13■□□□□ 0.81
VPS53-218ENST00000575207 ATP2B3Q16720 1220 aa20.13■□□□□ 0.81
VPS53-218ENST00000575207 TEX11Q8IYF3 940 aa20.13■□□□□ 0.81
VPS53-218ENST00000575207 FAM184BQ9ULE4 1060 aa20.13■□□□□ 0.81
VPS53-218ENST00000575207 CNPY2Q9Y2B0 182 aa20.13■□□□□ 0.81
VPS53-218ENST00000575207 COL4A4P53420 1690 aaPredicted RBP20.13■□□□□ 0.81
VPS53-218ENST00000575207 ZNFX1Q9P2E3 1918 aaKnown RBP20.12■□□□□ 0.81
VPS53-218ENST00000575207 GH2P01242 217 aa20.12■□□□□ 0.81
VPS53-218ENST00000575207 LDHCP07864 332 aa20.12■□□□□ 0.81
VPS53-218ENST00000575207 IRX5P78411 483 aaPredicted RBP20.12■□□□□ 0.81
VPS53-218ENST00000575207 RASGRF1Q13972 1273 aa20.12■□□□□ 0.81
VPS53-218ENST00000575207 ERICH6Q7L0X2 663 aa20.12■□□□□ 0.81
VPS53-218ENST00000575207 SPRED2Q7Z698 418 aa20.12■□□□□ 0.81
VPS53-218ENST00000575207 NCAPG2Q86XI2 1143 aa20.12■□□□□ 0.81
VPS53-218ENST00000575207 ADHFE1Q8IWW8 467 aa20.12■□□□□ 0.81
VPS53-218ENST00000575207 CRACR2BQ8N4Y2 399 aaPredicted RBP20.12■□□□□ 0.81
VPS53-218ENST00000575207 CDCA7LQ96GN5 454 aa20.12■□□□□ 0.81
VPS53-218ENST00000575207 SRCIN1Q9C0H9 1055 aa20.12■□□□□ 0.81
VPS53-218ENST00000575207 DNAH14Q0VDD8 3507 aa20.12■□□□□ 0.81
VPS53-218ENST00000575207 CFAP47Q6ZTR5 3102 aa20.11■□□□□ 0.81
VPS53-218ENST00000575207 KIF28PB7ZC32 967 aa20.11■□□□□ 0.81
VPS53-218ENST00000575207 IRS1P35568 1242 aa20.11■□□□□ 0.81
VPS53-218ENST00000575207 RALBP1Q15311 655 aa20.11■□□□□ 0.81
VPS53-218ENST00000575207 ZNF792Q3KQV3 632 aa20.11■□□□□ 0.81
VPS53-218ENST00000575207 CCDC102BQ68D86 513 aa20.11■□□□□ 0.81
VPS53-218ENST00000575207 ATG9AQ7Z3C6 839 aa20.11■□□□□ 0.81
VPS53-218ENST00000575207 MB21D1Q8N884 522 aa20.11■□□□□ 0.81
VPS53-218ENST00000575207 GDPD5Q8WTR4 605 aa20.11■□□□□ 0.81
VPS53-218ENST00000575207 TRIM34Q9BYJ4 488 aa20.11■□□□□ 0.81
VPS53-218ENST00000575207 C6orf222P0C671 652 aaPredicted RBP20.1■□□□□ 0.81
VPS53-218ENST00000575207 ASCL5Q7RTU5 278 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms